Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P628T30 Lonicera japonica HOM05D000003 ORTHO05D020833 4.2e-53 211.1 105 100.0
Lj4P801T16 Lonicera japonica HOM05D000003 ORTHO05D000006 6.3e-17 90.9 86 51.2
Lj2C538T6 Lonicera japonica HOM05D000003 ORTHO05D000126 5.9e-15 84.3 86 41.9
CANSAT01G1595 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-14 83.2 80 47.5
CANSAT11G1229 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-14 82.4 91 40.7
TPR.G520 Trifolium pratense HOM05D041061 ORTHO05D020833 2.2e-14 82.4 98 41.8
CANSAT54G0761 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-13 78.6 86 37.2
CANSAT25G1377 Cannabis sativa HOM05D000003 ORTHO05D000006 7.2e-13 77.4 100 41.0
CANSAT64G1355 Cannabis sativa HOM05D000003 ORTHO05D000006 7.2e-13 77.4 99 34.3
CANSAT35G1149 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-13 77.0 84 42.9
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-12 76.3 83 45.8
CANSAT78G1758 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-12 75.9 86 39.5
CANSAT01G0466 Cannabis sativa HOM05D000003 ORTHO05D000006 3.6e-12 75.1 83 38.6
CANSAT21G0602 Cannabis sativa HOM05D000003 ORTHO05D000006 6.1e-12 74.3 87 40.2
CANSAT64G0810 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-12 74.3 86 37.2
CANSAT54G1646 Cannabis sativa HOM05D000003 ORTHO05D000006 8.0e-12 73.9 83 41.0
CANSAT80G0163 Cannabis sativa HOM05D000003 ORTHO05D000006 8.0e-12 73.9 86 39.5
CANSAT21G0732 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-11 73.6 86 41.9
CANSAT56G0265 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-11 73.6 87 40.2
CANSAT56G3726 Cannabis sativa HOM05D000003 ORTHO05D000006 1.4e-11 73.2 83 41.0
Manes.11G088678 Manihot esculenta HOM05D000003 ORTHO05D000006 1.8e-11 72.8 83 42.2
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.8e-11 72.8 83 41.0
Manes.01G065050 Manihot esculenta HOM05D000003 ORTHO05D000006 2.3e-11 72.4 83 43.4
CANSAT35G0465 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-11 72.0 86 38.4
CANSAT54G0843 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-11 72.0 84 40.5
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-11 71.6 83 43.4
CANSAT11G2099 Cannabis sativa HOM05D000003 ORTHO05D000006 5.2e-11 71.2 86 40.7
CANSAT56G0158 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-11 71.2 86 38.4
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-11 70.9 83 36.1
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-11 70.9 86 38.4
CANSAT01G1065 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-10 70.1 86 39.5
CANSAT01G1428 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-10 70.1 99 32.3
CANSAT11G1881 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-10 69.7 86 37.2
CANSAT56G1952 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-10 69.7 83 41.0
CANSAT78G1210 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-10 69.7 86 37.2
Manes.13G098251 Manihot esculenta HOM05D000003 ORTHO05D000006 2.0e-10 69.3 96 39.6
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-10 68.9 83 38.6
CANSAT56G2039 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-10 68.9 99 33.3
CANSAT21G0223 Cannabis sativa HOM05D000003 ORTHO05D000006 3.4e-10 68.6 84 33.3
CANSAT80G0262 Cannabis sativa HOM05D000003 ORTHO05D000006 3.4e-10 68.6 84 36.9
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-10 68.2 88 38.6
CANSAT21G2279 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-10 68.2 84 39.3
Atru.chr4.252 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-10 67.8 99 34.3
CANSAT54G2152 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-10 67.8 83 37.3
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-10 67.8 83 41.0
Manes.14G151932 Manihot esculenta HOM05D000003 ORTHO05D000006 5.7e-10 67.8 98 35.7
Nn2g14311 Nelumbo nucifera HOM05D000003 ORTHO05D000004 5.7e-10 67.8 79 41.8
Nn3g17028 Nelumbo nucifera HOM05D000003 ORTHO05D000006 5.7e-10 67.8 86 38.4
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-10 67.4 86 37.2
CANSAT21G1935 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-10 67.4 84 35.7
CANSAT25G2578 Cannabis sativa HOM05D000003 ORTHO05D000006 7.5e-10 67.4 99 36.4
CANSAT35G1728 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-10 67.4 86 36.0
CANSAT54G0414 Cannabis sativa HOM05D000003 ORTHO05D000006 7.5e-10 67.4 87 34.5
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-10 67.4 91 34.1
CANSAT80G0065 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-10 67.4 86 36.0
CANSAT21G1305 Cannabis sativa HOM05D000003 ORTHO05D000006 9.8e-10 67.0 87 35.6
CANSAT35G0113 Cannabis sativa HOM05D000003 ORTHO05D000004 9.8e-10 67.0 86 37.2
CANSAT54G1425 Cannabis sativa HOM05D000003 ORTHO05D000006 9.8e-10 67.0 86 36.0
CANSAT35G1102 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-09 66.6 83 36.1
CANSAT78G0953 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-09 66.6 86 36.0
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-09 66.6 86 34.9
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-09 66.6 87 35.6
CANSAT21G2433 Cannabis sativa HOM05D000003 ORTHO05D000006 1.7e-09 66.2 94 35.1
FvH4_6g11611 Fragaria vesca HOM05D015790 ORTHO05D000006 1.7e-09 66.2 98 35.7
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-09 65.9 82 35.4
CANSAT54G0463 Cannabis sativa HOM05D000003 ORTHO05D000006 2.2e-09 65.9 86 36.0
CANSAT56G1890 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-09 65.9 75 38.7
Atru.chr9.814 Acer truncatum HOM05D000003 ORTHO05D000006 2.8e-09 65.5 99 33.3
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-09 65.5 83 37.3
CANSAT64G2379 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-09 65.5 87 34.5
CANSAT01G1437 Cannabis sativa HOM05D000003 ORTHO05D000006 3.7e-09 65.1 86 34.9
Manes.14G108366 Manihot esculenta HOM05D000003 ORTHO05D000006 3.7e-09 65.1 96 38.5
Atru.chr5.1583 Acer truncatum HOM05D000003 ORTHO05D000006 4.9e-09 64.7 86 36.0
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-09 64.7 83 39.8
CANSAT11G2372 Cannabis sativa HOM05D000003 ORTHO05D000004 6.3e-09 64.3 79 38.0
CANSAT56G3772 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 63.5 87 34.5
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 63.5 86 33.7
CANSAT11G1631 Cannabis sativa HOM05D000003 ORTHO05D000006 1.4e-08 63.2 83 34.9
CANSAT56G1931 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.2 86 30.2
CANSAT80G2809 Cannabis sativa HOM05D000003 ORTHO05D000006 1.4e-08 63.2 97 33.0
Manes.09G090221 Manihot esculenta HOM05D000003 ORTHO05D000006 1.4e-08 63.2 97 34.0
CANSAT35G0803 Cannabis sativa HOM05D000003 ORTHO05D000006 1.8e-08 62.8 84 33.3
CANSAT35G1027 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 62.8 86 32.6
CANSAT56G4053 Cannabis sativa HOM05D000003 ORTHO05D000006 1.8e-08 62.8 84 34.5
CANSAT64G1009 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 62.8 84 34.5
SHI39369 Sapria himalayana HOM05D000003 ORTHO05D000006 1.8e-08 62.8 86 37.2
CANSAT21G1336 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-08 62.4 82 36.6
CANSAT25G2411 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-08 62.0 87 33.3
CANSAT25G1351 Cannabis sativa HOM05D000003 ORTHO05D000006 4.1e-08 61.6 84 33.3
Atru.chr1.2944 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-08 61.2 86 33.7
CANSAT35G1541 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-08 61.2 93 34.4
CANSAT35G1937 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-08 61.2 86 31.4
AUR62031375 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.4e-08 61.2 89 33.7
QL08p004291 Quercus lobata HOM05D000003 ORTHO05D000006 5.4e-08 61.2 87 33.3
CANSAT54G2918 Cannabis sativa HOM05D000003 ORTHO05D000006 7.0e-08 60.8 83 36.1
CANSAT56G1157 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-08 60.8 84 33.3
CANSAT64G2432 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-08 60.8 99 31.3
Aa31LG8G12860 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.2e-08 60.5 100 36.0
CANSAT25G1294 Cannabis sativa HOM05D000003 ORTHO05D000004 9.2e-08 60.5 80 35.0
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 9.2e-08 60.5 86 32.6
Atru.chr12.2516 Acer truncatum HOM05D000003 ORTHO05D000006 1.6e-07 59.7 86 32.6
CANSAT01G1615 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 59.7 84 34.5
CANSAT35G1735 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 59.7 85 32.9
CANSAT54G1259 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 59.7 86 33.7
CANSAT78G2030 Cannabis sativa HOM05D000003 ORTHO05D000006 1.6e-07 59.7 86 29.1
QL09p011339 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-07 59.7 86 33.7
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 2.0e-07 59.3 86 32.6
CANSAT01G2104 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-07 59.3 84 32.1
CANSAT21G0332 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-07 59.3 86 31.4
CANSAT01G2554 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-07 58.9 86 31.4
QL05p084194 Quercus lobata HOM05D000309 ORTHO05D000271 2.7e-07 58.9 84 36.9
SHI25434 Sapria himalayana HOM05D000024 ORTHO05D000006 2.7e-07 58.9 104 32.7
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-07 58.5 87 37.9
Atru.chr9.1114 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-07 58.5 86 32.6
CANSAT21G1426 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-07 58.5 85 31.8
Atru.chr6.889 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-07 58.2 84 28.6
SHI34262 Sapria himalayana HOM05D000003 ORTHO05D000006 5.9e-07 57.8 104 32.7
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 89 32.6
Aa31sc56G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 100 34.0
Psat2g070240 Pisum sativum HOM05D000003 ORTHO05D000006 7.7e-07 57.4 88 29.5
Atru.chr2.314 Acer truncatum HOM05D000003 ORTHO05D000126 1.0e-06 57.0 83 33.7
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 1.0e-06 57.0 85 31.8
CANSAT25G0902 Cannabis sativa HOM05D000003 ORTHO05D000006 1.0e-06 57.0 86 31.4
CANSAT78G2184 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 57.0 79 35.4
SHI46765 Sapria himalayana HOM05D000024 ORTHO05D000006 1.0e-06 57.0 104 31.7
TPR.G18502 Trifolium pratense HOM05D000003 ORTHO05D000006 1.0e-06 57.0 86 27.9
TAR532G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.0e-06 57.0 53 43.4
CANSAT56G3448 Cannabis sativa HOM05D000003 ORTHO05D000006 1.3e-06 56.6 81 38.3
AUR62005341 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.3e-06 56.6 91 33.0
SHI14601 Sapria himalayana HOM05D000024 ORTHO05D000006 1.3e-06 56.6 104 31.7
TPR.G16931 Trifolium pratense HOM05D000003 ORTHO05D000006 1.3e-06 56.6 100 30.0
CANSAT80G2730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 56.2 86 29.1
Atru.chr5.2963 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-06 55.8 86 32.6
Atru.chr7.664 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 55.8 100 30.0
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 55.8 93 30.1
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-06 55.8 83 28.9
CANSAT11G0486 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-06 55.8 81 37.0
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-06 55.8 79 35.4
CANSAT78G1656 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-06 55.8 62 38.7
Manes.03G022751 Manihot esculenta HOM05D000003 ORTHO05D000004 2.3e-06 55.8 83 32.5
SHI25422 Sapria himalayana HOM05D000024 ORTHO05D000006 2.3e-06 55.8 92 35.9
SHI30232 Sapria himalayana HOM05D000003 ORTHO05D000004 2.3e-06 55.8 100 34.0
SHI49046 Sapria himalayana HOM05D000024 ORTHO05D000006 2.3e-06 55.8 91 36.3
Atru.chr4.1212 Acer truncatum HOM05D000003 ORTHO05D000006 2.9e-06 55.5 79 29.1
Atru.chr6.1886 Acer truncatum HOM05D000003 ORTHO05D000006 2.9e-06 55.5 86 30.2
CANSAT25G3896 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-06 55.5 81 33.3
Potri.002G000350 Populus trichocarpa HOM05D000003 ORTHO05D000006 2.9e-06 55.5 90 31.1
SHI34688 Sapria himalayana HOM05D000024 ORTHO05D000006 2.9e-06 55.5 94 35.1
SHI46014 Sapria himalayana HOM05D000003 ORTHO05D000004 2.9e-06 55.5 104 31.7
SHI54646 Sapria himalayana HOM05D000024 ORTHO05D000006 2.9e-06 55.5 104 31.7
SHI55174 Sapria himalayana HOM05D000024 ORTHO05D000006 2.9e-06 55.5 104 31.7
Atru.chr6.941 Acer truncatum HOM05D000003 ORTHO05D000006 3.8e-06 55.1 86 33.7
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 3.8e-06 55.1 87 32.2
CANSAT35G0462 Cannabis sativa HOM05D000003 ORTHO05D000006 3.8e-06 55.1 92 33.7
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 55.1 87 33.3
RcHm_v2.0_Chr5g0027881 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-06 55.1 95 27.4
SHI33426 Sapria himalayana HOM05D000024 ORTHO05D000006 3.8e-06 55.1 91 35.2
TPR.G18999 Trifolium pratense HOM05D000003 ORTHO05D000006 3.8e-06 55.1 86 23.3
CANSAT11G2301 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 86 30.2
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 83 33.7
CANSAT21G1904 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 88 29.5
CANSAT54G1058 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 93 34.4
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 5.0e-06 54.7 83 31.3
SEGI_38850 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 5.0e-06 54.7 91 31.9
TPR.G5809 Trifolium pratense HOM05D000003 ORTHO05D000126 5.0e-06 54.7 86 23.3
Atru.chr3.1851 Acer truncatum HOM05D000003 ORTHO05D000006 6.6e-06 54.3 86 30.2
Lj7C4G2 Lonicera japonica HOM05D000003 ORTHO05D000004 6.6e-06 54.3 92 35.9
SHI30688 Sapria himalayana HOM05D000024 ORTHO05D000006 6.6e-06 54.3 105 33.3
SHI44171 Sapria himalayana HOM05D000024 ORTHO05D000006 6.6e-06 54.3 81 37.0
Atru.chr2.2282 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-06 53.9 86 27.9
Atru.chr5.2672 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-06 53.9 82 35.4
Aa31LG3G5010 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.6e-06 53.9 83 31.3
CANSAT01G2311 Cannabis sativa HOM05D000003 ORTHO05D000006 8.6e-06 53.9 57 42.1
CANSAT01G3235 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-06 53.9 87 36.8
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-06 53.9 83 31.3
AUR62010906 Chenopodium quinoa HOM05D000003 ORTHO05D000006 8.6e-06 53.9 87 29.9
Nn5g27257 Nelumbo nucifera HOM05D000003 ORTHO05D000004 8.6e-06 53.9 65 40.0
SHI25440 Sapria himalayana HOM05D000024 ORTHO05D000006 8.6e-06 53.9 103 31.1
SHI35878 Sapria himalayana HOM05D000024 ORTHO05D000006 8.6e-06 53.9 104 30.8
SHI39530 Sapria himalayana HOM05D000024 ORTHO05D000006 8.6e-06 53.9 81 38.3


User provided reference genes

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