Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P573T13 Lonicera japonica HOM05D036285 ORTHO05D017886 1.1e-33 147.5 201 100.0
Lj4C560G1 Lonicera japonica HOM05D000021 ORTHO05D000010 1.4e-12 77.4 45 80.0
Actinidia29429 Actinidia chinensis HOM05D000021 ORTHO05D000010 4.0e-12 75.9 63 60.3
Haze_18748 Corylus avellana HOM05D000021 ORTHO05D000010 1.5e-11 73.9 69 56.5
Lj4P569T23 Lonicera japonica HOM05D036285 ORTHO05D017886 2.0e-11 73.6 48 79.2
Actinidia29435 Actinidia chinensis HOM05D000021 ORTHO05D000010 5.8e-11 72.0 63 57.1
CSS0025578 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.7e-10 70.5 66 60.6
Sopen12g003360 Solanum pennellii HOM05D000021 ORTHO05D000010 2.2e-10 70.1 67 50.7
PGSC0003DMG401000299 Solanum tuberosum HOM05D000021 ORTHO05D000010 2.2e-10 70.1 67 50.7
Lj4C557G2 Lonicera japonica HOM05D000021 ORTHO05D000010 2.9e-10 69.7 68 58.8
Lj4P539T18 Lonicera japonica HOM05D036285 ORTHO05D017886 2.9e-10 69.7 68 58.8
Solyc12g008400.2 Solanum lycopersicum HOM05D000021 ORTHO05D000010 2.9e-10 69.7 67 49.3
Dinv16795 Davidia involucrata HOM05D000021 ORTHO05D000010 6.4e-10 68.6 66 53.0
Dinv27393 Davidia involucrata HOM05D000021 ORTHO05D000010 6.4e-10 68.6 67 53.7
DCAR_014277 Daucus carota HOM05D000021 ORTHO05D000010 2.4e-09 66.6 70 50.0
CSS0025266 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D002559 3.2e-09 66.2 64 56.2
Prupe.2G048900 Prunus persica HOM05D000021 ORTHO05D000010 3.2e-09 66.2 68 51.5
Lj4A573G41 Lonicera japonica HOM05D000021 ORTHO05D000010 7.1e-09 65.1 50 66.0
TWI09G1583 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.2e-08 64.3 67 50.7
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 1.6e-08 63.9 53 56.6
Lj4A546G50 Lonicera japonica HOM05D000021 ORTHO05D000010 1.6e-08 63.9 50 64.0
Gohir.A04G039000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.7e-08 63.2 68 48.5
GSVIVG01016080001 Vitis vinifera HOM05D000021 ORTHO05D000010 3.5e-08 62.8 67 50.7
Prupe.6G294300 Prunus persica HOM05D000021 ORTHO05D000010 4.6e-08 62.4 64 51.6
TWI09G0247 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 6.0e-08 62.0 65 50.8
Haze_05837 Corylus avellana HOM05D000021 ORTHO05D000010 7.9e-08 61.6 66 53.0
RcHm_v2.0_Chr5g0011291 Rosa chinensis HOM05D000021 ORTHO05D000010 7.9e-08 61.6 65 47.7
TWI09G0717 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.0e-07 61.2 64 51.6
TWI39G0243 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.0e-07 61.2 67 47.8
Gohir.A05G290100 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.3e-07 60.8 67 44.8
Lj4A604G24 Lonicera japonica HOM05D000021 ORTHO05D000010 1.3e-07 60.8 34 82.4
Thecc.07G128700 Theobroma cacao HOM05D000021 ORTHO05D000010 1.3e-07 60.8 66 51.5
MD07G1168700 Malus domestica HOM05D000021 ORTHO05D000010 1.8e-07 60.5 64 43.8
RcHm_v2.0_Chr5g0011171 Rosa chinensis HOM05D000021 ORTHO05D000010 1.8e-07 60.5 64 46.9
CiPaw.09G076200 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.3e-07 60.1 68 50.0
Gohir.D05G343400 Gossypium hirsutum HOM05D000021 ORTHO05D000010 2.3e-07 60.1 66 45.5
Gorai.009G370000 Gossypium raimondii HOM05D000021 ORTHO05D000010 2.3e-07 60.1 66 45.5
arahy.Tifrunner.gnm1.ann1.M36Q6P Arachis hypogaea HOM05D000021 ORTHO05D000010 3.0e-07 59.7 57 54.4
arahy.Tifrunner.gnm1.ann1.VH2Q87 Arachis hypogaea HOM05D000021 ORTHO05D000010 3.0e-07 59.7 57 54.4
Gohir.D05G343120 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 43.9
Gohir.D05G343600 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 45.5
Gohir.D05G343800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 45.5
Gorai.009G370800 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 45.5
Gorai.009G371100 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 45.5
Gorai.009G371600 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.0e-07 59.7 66 45.5
RcHm_v2.0_Chr2g0113611 Rosa chinensis HOM05D000021 ORTHO05D000010 3.0e-07 59.7 62 48.4
Duzib160G0341 Durio zibethinus HOM05D000021 ORTHO05D000010 3.9e-07 59.3 65 47.7
Gohir.D05G343000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.9e-07 59.3 66 47.0
Gohir.D05G343500 Gossypium hirsutum HOM05D000021 ORTHO05D000010 3.9e-07 59.3 66 47.0
Lj4C543G1 Lonicera japonica HOM05D000021 ORTHO05D000010 3.9e-07 59.3 35 77.1
Thecc.07G128800 Theobroma cacao HOM05D000021 ORTHO05D000010 3.9e-07 59.3 66 50.0
Haze_05833 Corylus avellana HOM05D000021 ORTHO05D017886 5.1e-07 58.9 66 48.5
Gohir.D05G344000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.1e-07 58.9 66 45.5
Cc00_g17350 Coffea canephora HOM05D000021 ORTHO05D000010 6.7e-07 58.5 68 50.0
Duzib133G1149 Durio zibethinus HOM05D000021 ORTHO05D000010 6.7e-07 58.5 63 46.0
Duzib213G1062 Durio zibethinus HOM05D000021 ORTHO05D000010 6.7e-07 58.5 68 48.5
Gohir.A05G290200 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.7e-07 58.5 53 54.7
Gohir.D05G343100 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.7e-07 58.5 66 47.0
Gohir.D05G343160 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.7e-07 58.5 66 47.0
Gohir.D05G343700 Gossypium hirsutum HOM05D000021 ORTHO05D000010 6.7e-07 58.5 66 45.5
Gorai.009G307100 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.7e-07 58.5 55 50.9
Gorai.009G366200 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.7e-07 58.5 66 43.9
SalBow7G0156 Salvia bowleyana HOM05D000021 ORTHO05D000010 6.7e-07 58.5 54 48.1
Thecc.07G129000 Theobroma cacao HOM05D000021 ORTHO05D000010 6.7e-07 58.5 65 46.2
Duzib033G0001 Durio zibethinus HOM05D000021 ORTHO05D000010 8.7e-07 58.2 68 47.1
Migut.N03333 Erythranthe guttata HOM05D000021 ORTHO05D000010 8.7e-07 58.2 54 51.9
Gohir.D05G343766 Gossypium hirsutum HOM05D000021 ORTHO05D000010 8.7e-07 58.2 66 43.9
Gorai.009G370300 Gossypium raimondii HOM05D000021 ORTHO05D000010 8.7e-07 58.2 68 47.1
RcHm_v2.0_Chr5g0011341 Rosa chinensis HOM05D000021 ORTHO05D000010 8.7e-07 58.2 66 48.5
RcHm_v2.0_Chr5g0059181 Rosa chinensis HOM05D000021 ORTHO05D000010 8.7e-07 58.2 68 41.2
Atru.chr9.1713 Acer truncatum HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 46.2
Cc00_g07730 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-06 57.8 61 52.5
Haze_05412 Corylus avellana HOM05D000021 ORTHO05D017886 1.1e-06 57.8 67 49.3
Gohir.D05G339700 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.1e-06 57.8 66 43.9
Gorai.009G369800 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.1e-06 57.8 66 45.5
MD05G1297700 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-06 57.8 71 45.1
QL06p019291 Quercus lobata HOM05D000021 ORTHO05D000010 1.1e-06 57.8 65 46.2
CiPaw.09G134500 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.5e-06 57.4 69 47.8
Ciclev10024125m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.5e-06 57.4 66 43.9
Haze_09392 Corylus avellana HOM05D000021 ORTHO05D000010 1.5e-06 57.4 68 47.1
Gohir.A01G058400 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.5e-06 57.4 61 45.9
Gorai.009G306900 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.5e-06 57.4 67 44.8
RcHm_v2.0_Chr5g0011261 Rosa chinensis HOM05D000021 ORTHO05D000010 1.5e-06 57.4 66 40.9
Ciclev10018837m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.9e-06 57.0 66 43.9
Haze_05832 Corylus avellana HOM05D000021 ORTHO05D017886 1.9e-06 57.0 68 47.1
HanXRQChr15g0480491 Helianthus annuus HOM05D000021 ORTHO05D000010 1.9e-06 57.0 66 50.0
Nn2g12664 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.9e-06 57.0 65 46.2
RcHm_v2.0_Chr5g0059161 Rosa chinensis HOM05D000021 ORTHO05D000010 1.9e-06 57.0 65 46.2
SalBow6G0854 Salvia bowleyana HOM05D000021 ORTHO05D000010 1.9e-06 57.0 54 50.0
Ciclev10014011m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.5e-06 56.6 68 44.1
Ciclev10018687m.g Citrus clementina HOM05D000021 ORTHO05D000010 2.5e-06 56.6 66 45.5
Gorai.009G371300 Gossypium raimondii HOM05D000021 ORTHO05D000010 2.5e-06 56.6 66 43.9
HanXRQChr04g0119521 Helianthus annuus HOM05D000021 ORTHO05D000010 2.5e-06 56.6 63 49.2
Lj2g0012129 Lotus japonicus HOM05D000021 ORTHO05D000010 2.5e-06 56.6 69 43.5
MD07G1034900 Malus domestica HOM05D000021 ORTHO05D000010 2.5e-06 56.6 72 51.4
Prupe.4G064200 Prunus persica HOM05D000021 ORTHO05D000010 2.5e-06 56.6 67 49.3
RcHm_v2.0_Chr2g0113631 Rosa chinensis HOM05D000021 ORTHO05D000010 2.5e-06 56.6 61 47.5
RcHm_v2.0_Chr4g0404191 Rosa chinensis HOM05D000021 ORTHO05D000010 2.5e-06 56.6 63 41.3
Thecc.07G128900 Theobroma cacao HOM05D000021 ORTHO05D000010 2.5e-06 56.6 67 47.8
TWI09G1256 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.5e-06 56.6 64 46.9
CSS0000258 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.3e-06 56.2 67 44.8
CSS0031864 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 3.3e-06 56.2 67 44.8
Cpa.g.sc596.1 Carica papaya HOM05D000021 ORTHO05D000010 3.3e-06 56.2 71 47.9
CiPaw.09G135100 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.3e-06 56.2 69 42.0
CiPaw.10G099300 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.3e-06 56.2 69 52.2
Duzib268G1087 Durio zibethinus HOM05D000021 ORTHO05D000010 3.3e-06 56.2 64 48.4
Gorai.002G064300 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.3e-06 56.2 61 45.9
MD05G1298400 Malus domestica HOM05D000021 ORTHO05D000010 3.3e-06 56.2 69 43.5
MD10G1277600 Malus domestica HOM05D000021 ORTHO05D000010 3.3e-06 56.2 71 45.1
Prupe.4G130200 Prunus persica HOM05D000021 ORTHO05D000010 3.3e-06 56.2 70 47.1
QL11p015220 Quercus lobata HOM05D000021 ORTHO05D000010 3.3e-06 56.2 65 44.6
SalBow7G2749 Salvia bowleyana HOM05D000021 ORTHO05D000010 3.3e-06 56.2 57 47.4
CiPaw.09G134900 Carya illinoinensis HOM05D000021 ORTHO05D000010 4.3e-06 55.8 69 42.0
Haze_05814 Corylus avellana HOM05D000021 ORTHO05D017886 4.3e-06 55.8 66 45.5
Gohir.A04G039015 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.3e-06 55.8 66 43.9
Gohir.D01G044700 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.3e-06 55.8 61 44.3
Gorai.009G365700 Gossypium raimondii HOM05D000021 ORTHO05D000010 4.3e-06 55.8 66 43.9
Medtr8g470560 Medicago truncatula HOM05D000021 ORTHO05D000010 4.3e-06 55.8 64 42.2
Nn1g08608 Nelumbo nucifera HOM05D000021 ORTHO05D000010 4.3e-06 55.8 65 44.6
Potri.016G029900 Populus trichocarpa HOM05D000021 ORTHO05D000010 4.3e-06 55.8 64 43.8
Prupe.4G057800 Prunus persica HOM05D000021 ORTHO05D000010 4.3e-06 55.8 67 46.3
Prupe.4G064400 Prunus persica HOM05D000021 ORTHO05D000010 4.3e-06 55.8 69 46.4
Prupe.4G064600 Prunus persica HOM05D000021 ORTHO05D000010 4.3e-06 55.8 65 47.7
Thecc.06G006800 Theobroma cacao HOM05D000021 ORTHO05D000010 4.3e-06 55.8 63 49.2
TAR362G1236 Trochodendron aralioides HOM05D000021 ORTHO05D000010 4.3e-06 55.8 63 44.4
CiPaw.05G223100 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.6e-06 55.5 63 47.6
CiPaw.09G134800 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.6e-06 55.5 69 43.5
CiPaw.09G135500 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.6e-06 55.5 69 40.6
Haze_05413 Corylus avellana HOM05D000021 ORTHO05D000010 5.6e-06 55.5 67 47.8
Gohir.A04G039045 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.6e-06 55.5 68 44.1
Gohir.D05G291266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 5.6e-06 55.5 57 52.6
MD05G1297900 Malus domestica HOM05D000021 ORTHO05D000010 5.6e-06 55.5 70 41.4
Manes.17G057700 Manihot esculenta HOM05D000021 ORTHO05D000010 5.6e-06 55.5 67 43.3
QL03p026383 Quercus lobata HOM05D000021 ORTHO05D000010 5.6e-06 55.5 67 43.3
QL11p015073 Quercus lobata HOM05D000021 ORTHO05D000010 5.6e-06 55.5 62 43.5
SalBow7G4108 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.6e-06 55.5 63 39.7
CSS0049677 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 7.4e-06 55.1 66 43.9
Ciclev10018259m.g Citrus clementina HOM05D000021 ORTHO05D000010 7.4e-06 55.1 57 50.9
Gorai.009G364900 Gossypium raimondii HOM05D000021 ORTHO05D000010 7.4e-06 55.1 51 51.0
Oeu064075.3 Olea europaea HOM05D000021 ORTHO05D000010 7.4e-06 55.1 69 46.4
Potri.003G150000 Populus trichocarpa HOM05D000021 ORTHO05D000010 7.4e-06 55.1 66 48.5
QL03p025853 Quercus lobata HOM05D000021 ORTHO05D000010 7.4e-06 55.1 67 43.3
QL11p014379 Quercus lobata HOM05D000021 ORTHO05D000010 7.4e-06 55.1 66 42.4
QL11p014994 Quercus lobata HOM05D000021 ORTHO05D000010 7.4e-06 55.1 66 42.4
RcHm_v2.0_Chr5g0011691 Rosa chinensis HOM05D000021 ORTHO05D000010 7.4e-06 55.1 61 45.9
RcHm_v2.0_Chr5g0040461 Rosa chinensis HOM05D000021 ORTHO05D000010 7.4e-06 55.1 64 42.2
Sabra11G0049400 Salix brachista HOM05D000021 ORTHO05D000010 7.4e-06 55.1 68 41.2
SalBow7G2741 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.4e-06 55.1 51 47.1
TAR383G0733 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.4e-06 55.1 63 44.4
CiPaw.10G100500 Carya illinoinensis HOM05D000021 ORTHO05D000010 9.6e-06 54.7 69 47.8
CiPaw.10G101200 Carya illinoinensis HOM05D000021 ORTHO05D000010 9.6e-06 54.7 69 49.3
FAN11G2251 Fragaria x ananassa HOM05D000021 ORTHO05D000010 9.6e-06 54.7 66 48.5
Gorai.009G308400 Gossypium raimondii HOM05D000021 ORTHO05D000010 9.6e-06 54.7 67 46.3
Manes.10G068500 Manihot esculenta HOM05D000021 ORTHO05D000010 9.6e-06 54.7 65 44.6
RcHm_v2.0_Chr2g0115761 Rosa chinensis HOM05D000021 ORTHO05D000010 9.6e-06 54.7 61 49.2


User provided reference genes

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