Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.1e-47 192.2 108 100.0
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 6.7e-30 134.0 123 61.8
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 8.8e-30 133.7 104 68.3
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 7.4e-29 130.6 81 79.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.8e-28 128.6 82 76.8
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-28 128.6 114 64.0
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-28 128.6 114 64.0
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.8e-28 128.6 114 64.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.3e-28 127.5 111 63.1
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 6.3e-28 127.5 106 63.2
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 6.3e-28 127.5 82 76.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 6.3e-28 127.5 112 64.3
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.3e-28 127.5 112 64.3
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 8.2e-28 127.1 115 72.2
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.1e-27 126.7 107 64.5
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.4e-27 126.3 78 79.5
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 5.3e-27 124.4 114 62.3
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.9e-27 124.0 106 60.4
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 6.9e-27 124.0 110 66.4
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.9e-27 124.0 107 65.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 9.1e-27 123.6 80 75.0
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.2e-26 123.2 82 78.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.2e-26 123.2 80 76.2
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.2e-26 123.2 111 67.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.5e-26 122.9 105 65.7
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.6e-26 122.1 121 66.9
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 2.6e-26 122.1 81 76.5
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.4e-26 121.7 104 61.5
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.4e-26 121.7 108 69.4
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 7.7e-26 120.6 105 63.8
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.7e-25 119.4 91 69.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 2.2e-25 119.0 80 72.5
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.8e-25 118.2 78 73.1
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 3.8e-25 118.2 91 69.2
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.0e-25 117.9 79 74.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.0e-25 117.9 79 74.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 5.0e-25 117.9 82 69.5
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 5.0e-25 117.9 74 74.3
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 5.0e-25 117.9 76 73.7
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 6.5e-25 117.5 85 68.2
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.5e-25 117.5 82 73.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.5e-25 117.5 81 74.1
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.5e-25 117.5 104 59.6
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 6.5e-25 117.5 86 72.1
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 8.5e-25 117.1 73 80.8
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 2.5e-24 115.5 72 79.2
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 2.5e-24 115.5 80 75.0
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 4.2e-24 114.8 79 70.9
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 7.2e-24 114.0 81 69.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.2e-23 113.2 78 76.9
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.2e-23 113.2 106 57.5
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.6e-23 112.8 109 56.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 2.7e-23 112.1 83 69.9
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.7e-23 112.1 78 69.2
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.7e-23 112.1 78 69.2
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.9e-23 110.5 78 67.9
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.8e-22 109.4 108 57.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.3e-22 109.0 102 57.8
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.3e-22 109.0 92 65.2
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.3e-22 109.0 85 65.9
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.0e-22 108.6 89 66.3
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-22 108.6 84 66.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 3.9e-22 108.2 84 69.0
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 3.9e-22 108.2 95 64.2
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 3.9e-22 108.2 79 65.8
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 5.1e-22 107.8 95 61.1
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.0e-21 105.9 84 67.9
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.6e-21 105.5 122 53.3
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.4e-21 104.8 78 69.2
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.4e-21 104.8 78 69.2
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 4.4e-21 104.8 98 63.3
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.7e-21 104.4 104 59.6
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.7e-21 104.4 104 60.6
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 5.7e-21 104.4 88 58.0
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 5.7e-21 104.4 73 74.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 7.4e-21 104.0 85 67.1
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.4e-21 104.0 104 59.6
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.7e-20 102.8 74 67.6
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.8e-20 102.1 90 63.3
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 3.7e-20 101.7 135 45.9
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.7e-20 101.7 87 62.1
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.3e-20 100.9 81 66.7
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 6.3e-20 100.9 105 57.1
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.2e-20 100.5 59 78.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 8.2e-20 100.5 112 53.6
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.8e-19 99.4 106 50.0
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.8e-19 99.4 82 65.9
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 2.4e-19 99.0 86 61.6
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 3.1e-19 98.6 80 66.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.1e-19 98.6 81 66.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 3.1e-19 98.6 87 63.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 3.1e-19 98.6 91 62.6
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.3e-19 97.8 118 49.2
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 5.3e-19 97.8 117 49.6
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 6.9e-19 97.4 87 57.5
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 6.9e-19 97.4 111 51.4
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 9.1e-19 97.1 68 72.1
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.2e-18 96.7 53 83.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.2e-18 96.7 103 63.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.5e-18 96.3 117 49.6
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.5e-18 96.3 117 49.6
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 4.5e-18 94.7 96 52.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 4.5e-18 94.7 96 52.1
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.5e-18 94.7 58 81.0
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 4.5e-18 94.7 85 62.4
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.5e-18 94.7 80 63.8
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 7.7e-18 94.0 69 69.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.7e-18 94.0 88 59.1
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.3e-17 93.2 91 57.1
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.2e-17 92.4 96 51.0
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.2e-17 92.4 53 81.1
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.2e-17 92.4 86 62.8
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 2.9e-17 92.0 97 50.5
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 6.5e-17 90.9 114 48.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 6.5e-17 90.9 93 57.0
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 8.5e-17 90.5 96 50.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 8.5e-17 90.5 96 50.0
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 8.5e-17 90.5 81 60.5
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.9e-16 89.4 54 72.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.5e-16 89.0 84 54.8
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 4.2e-16 88.2 90 51.1
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.2e-16 88.2 93 55.9
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.2e-16 88.2 100 53.0
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.2e-15 86.7 83 56.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.6e-15 86.3 51 68.6
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.1e-15 85.9 86 53.5
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.1e-15 85.9 78 62.8
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.1e-15 85.9 50 80.0
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.7e-15 85.5 91 51.6
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.0e-15 84.0 78 62.8
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.3e-14 82.4 86 52.3
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 5.2e-14 81.3 54 74.1
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.7e-14 80.9 77 57.1
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.3e-13 78.6 85 51.8
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 5.7e-13 77.8 52 67.3
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 9.7e-13 77.0 96 49.0
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 4.8e-12 74.7 74 54.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 3.1e-11 72.0 78 55.1
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.0e-11 70.9 79 54.4
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.0e-11 70.9 79 54.4
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.6e-10 69.7 81 46.9
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.7e-10 67.4 69 52.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.0e-09 67.0 91 44.0
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-09 66.2 63 57.1
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 8.5e-09 63.9 48 66.7
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 8.5e-09 63.9 48 66.7
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 5.5e-08 61.2 75 49.3
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 9.4e-08 60.5 77 46.8


User provided reference genes

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