Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P488T6 Lonicera japonica HOM05D012321 ORTHO05D012493 1.3e-36 156.0 82 100.0
Lj4P485T6 Lonicera japonica HOM05D012321 ORTHO05D012493 1.1e-27 126.3 82 84.1
Lj1P486T7 Lonicera japonica HOM05D012321 ORTHO05D012493 1.1e-19 99.8 82 68.3
Lj1P491T19 Lonicera japonica HOM05D012321 ORTHO05D012493 1.1e-19 99.8 67 79.1
Lj1P488T10 Lonicera japonica HOM05D012321 ORTHO05D012493 3.1e-19 98.2 67 79.1
Lj1P505T14 Lonicera japonica HOM05D012321 ORTHO05D012493 1.2e-18 96.3 60 81.7
Lju3616P0T7 Lonicera japonica HOM05D012321 ORTHO05D012493 2.0e-18 95.5 60 80.0
Dinv15562 Davidia involucrata HOM05D000312 ORTHO05D000221 3.9e-14 81.3 69 56.5
Lj3A423G38 Lonicera japonica HOM05D012321 ORTHO05D012493 1.9e-13 79.0 82 61.0
Lj4A488T7 Lonicera japonica HOM05D012321 ORTHO05D012493 4.3e-13 77.8 58 74.1
Lj3A423G37 Lonicera japonica HOM05D012321 ORTHO05D012493 9.6e-13 76.6 70 64.3
CSS0007927 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 2.1e-12 75.5 80 48.8
CSS0046143 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 2.1e-12 75.5 80 48.8
Nitab4.5_0012426g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.1e-11 73.2 70 50.0
Lj4A129T110 Lonicera japonica HOM05D012321 ORTHO05D012493 1.4e-11 72.8 80 50.0
Nitab4.5_0000149g0030 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.4e-11 72.8 70 52.9
Lsat_1_v5_gn_1_81120 Lactuca sativa HOM05D000312 ORTHO05D000221 2.4e-11 72.0 69 53.6
Lj3A423G34 Lonicera japonica HOM05D012321 ORTHO05D012493 2.4e-11 72.0 70 62.9
Lj3A423G35 Lonicera japonica HOM05D012321 ORTHO05D012493 3.1e-11 71.6 70 61.4
HanXRQChr01g0018881 Helianthus annuus HOM05D000312 ORTHO05D000221 4.0e-11 71.2 69 50.7
Nitab4.5_0006592g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.5e-10 69.3 69 53.6
Peaxi162Scf00015g00635 Petunia axillaris HOM05D000312 ORTHO05D000221 3.4e-10 68.2 72 52.8
Dinv16568 Davidia involucrata HOM05D001046 ORTHO05D000221 4.5e-10 67.8 69 53.6
HanXRQChr12g0373691 Helianthus annuus HOM05D000312 ORTHO05D000221 4.5e-10 67.8 69 44.9
Lsat_1_v5_gn_1_80360 Lactuca sativa HOM05D000312 ORTHO05D000221 4.5e-10 67.8 68 51.5
Cc11_g11170 Coffea canephora HOM05D000312 ORTHO05D000221 5.8e-10 67.4 81 45.7
Lsat_1_v5_gn_1_81001 Lactuca sativa HOM05D000312 ORTHO05D000221 7.6e-10 67.0 68 47.1
Cc05_g01220 Coffea canephora HOM05D000312 ORTHO05D000221 1.0e-09 66.6 68 52.9
Cc11_g11160 Coffea canephora HOM05D000312 ORTHO05D000221 1.3e-09 66.2 68 52.9
Peaxi162Scf00026g01914 Petunia axillaris HOM05D000312 ORTHO05D000221 1.3e-09 66.2 68 47.1
Dinv16565 Davidia involucrata HOM05D000312 ORTHO05D000221 1.7e-09 65.9 67 53.7
HanXRQChr01g0019091 Helianthus annuus HOM05D000312 ORTHO05D000221 1.7e-09 65.9 69 44.9
Lsat_1_v5_gn_1_81541 Lactuca sativa HOM05D000312 ORTHO05D000221 2.2e-09 65.5 69 49.3
HanXRQChr01g0017811 Helianthus annuus HOM05D000312 ORTHO05D000221 5.0e-09 64.3 65 50.8
Sopen04g013320 Solanum pennellii HOM05D000004 ORTHO05D000002 5.0e-09 64.3 68 48.5
PGSC0003DMG400047124 Solanum tuberosum HOM05D000312 ORTHO05D000221 5.0e-09 64.3 70 45.7
Lsat_1_v5_gn_1_81061 Lactuca sativa HOM05D000312 ORTHO05D012493 6.5e-09 63.9 69 46.4
Nitab4.5_0004294g0040 Nicotiana tabacum HOM05D000312 ORTHO05D000221 6.5e-09 63.9 70 48.6
Nitab4.5_0004688g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 6.5e-09 63.9 68 48.5
HanXRQChr01g0019081 Helianthus annuus HOM05D000312 ORTHO05D000221 8.4e-09 63.5 67 47.8
PGSC0003DMG400002954 Solanum tuberosum HOM05D000312 ORTHO05D012493 8.4e-09 63.5 70 45.7
Hma1.2p1_0148F.1_g066000 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 1.4e-08 62.8 67 49.3
Nitab4.5_0000149g0040 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.9e-08 62.4 70 45.7
Nitab4.5_0000914g0270 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.9e-08 62.4 72 44.4
Solyc11g011230.3 Solanum lycopersicum HOM05D000312 ORTHO05D000221 1.9e-08 62.4 68 51.5
CSS0048385 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 4.2e-08 61.2 79 46.8
CAN.G1163.6 Capsicum annuum HOM05D000312 ORTHO05D000221 4.2e-08 61.2 69 49.3
HanXRQChr01g0019051 Helianthus annuus HOM05D000312 ORTHO05D000221 4.2e-08 61.2 67 46.3
Lsat_1_v5_gn_1_75200 Lactuca sativa HOM05D000312 ORTHO05D000221 4.2e-08 61.2 67 47.8
Peaxi162Scf00003g00813 Petunia axillaris HOM05D000312 ORTHO05D000221 4.2e-08 61.2 72 48.6
HanXRQChr01g0017111 Helianthus annuus HOM05D000312 ORTHO05D000221 7.1e-08 60.5 67 46.3
Nitab4.5_0004055g0040 Nicotiana tabacum HOM05D000312 ORTHO05D000221 7.1e-08 60.5 72 43.1
Lsat_1_v5_gn_1_81421 Lactuca sativa HOM05D000312 ORTHO05D012493 9.3e-08 60.1 69 44.9
Nitab4.5_0000913g0170 Nicotiana tabacum HOM05D000312 ORTHO05D000221 9.3e-08 60.1 81 42.0
CAN.G1217.12 Capsicum annuum HOM05D000312 ORTHO05D000221 1.2e-07 59.7 70 44.3
Dinv27405 Davidia involucrata HOM05D000312 ORTHO05D000221 1.2e-07 59.7 71 46.5
Nitab4.5_0004294g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.2e-07 59.7 68 50.0
Dinv27407 Davidia involucrata HOM05D000312 ORTHO05D000221 1.6e-07 59.3 79 41.8
Rhsim12G0069100 Rhododendron simsii HOM05D000312 ORTHO05D000221 1.6e-07 59.3 67 44.8
CAN.G1602.1 Capsicum annuum HOM05D000312 ORTHO05D000221 2.1e-07 58.9 70 40.0
Lsat_1_v5_gn_1_81361 Lactuca sativa HOM05D000312 ORTHO05D000221 2.1e-07 58.9 69 43.5
Peaxi162Scf00003g00089 Petunia axillaris HOM05D000312 ORTHO05D000221 3.5e-07 58.2 73 43.8
Peaxi162Scf00015g02411 Petunia axillaris HOM05D000312 ORTHO05D000221 6.1e-07 57.4 70 41.4
Rhsim12G0069300 Rhododendron simsii HOM05D000312 ORTHO05D000221 6.1e-07 57.4 67 43.3
CAN.G1339.1 Capsicum annuum HOM05D000312 ORTHO05D000221 7.9e-07 57.0 70 40.0
Dinv34662 Davidia involucrata HOM05D000312 ORTHO05D000221 7.9e-07 57.0 68 47.1
Lsat_1_v5_gn_1_81180 Lactuca sativa HOM05D000312 ORTHO05D000221 7.9e-07 57.0 69 44.9
Oeu035182.1 Olea europaea HOM05D000312 ORTHO05D000221 7.9e-07 57.0 74 41.9
Nitab4.5_0009122g0020 Nicotiana tabacum HOM05D000312 ORTHO05D020289 1.0e-06 56.6 67 38.8
PGSC0003DMG400016882 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.0e-06 56.6 69 49.3
CSS0004612 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 1.3e-06 56.2 71 43.7
Medtr1g011430 Medicago truncatula HOM05D000312 ORTHO05D000221 1.3e-06 56.2 60 51.7
Nitab4.5_0001840g0070 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.3e-06 56.2 68 47.1
Nitab4.5_0005211g0010 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.3e-06 56.2 81 40.7
CAN.G184.21 Capsicum annuum HOM05D000312 ORTHO05D011153 1.8e-06 55.8 69 43.5
Rhsim12G0069200 Rhododendron simsii HOM05D000312 ORTHO05D012493 1.8e-06 55.8 67 41.8
Peaxi162Scf00053g00810 Petunia axillaris HOM05D000312 ORTHO05D000221 2.3e-06 55.5 69 37.7
Peaxi162Scf00121g00220 Petunia axillaris HOM05D000312 ORTHO05D000221 2.3e-06 55.5 75 44.0
Rhsim12G0069400 Rhododendron simsii HOM05D000312 ORTHO05D000221 2.3e-06 55.5 67 43.3
Solyc04g079800.4 Solanum lycopersicum HOM05D000312 ORTHO05D000221 2.3e-06 55.5 69 49.3
Sopen04g013290 Solanum pennellii HOM05D000312 ORTHO05D000221 2.3e-06 55.5 68 42.6
Sopen04g033380 Solanum pennellii HOM05D000312 ORTHO05D000221 2.3e-06 55.5 69 49.3
CAN.G371.120 Capsicum annuum HOM05D000312 ORTHO05D000221 3.0e-06 55.1 69 49.3
Hma1.2p1_0189F.1_g082900 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 3.0e-06 55.1 68 44.1
Nitab4.5_0000110g0120 Nicotiana tabacum HOM05D000312 ORTHO05D000221 3.0e-06 55.1 69 49.3
Nitab4.5_0012474g0030 Nicotiana tabacum HOM05D000312 ORTHO05D000221 3.0e-06 55.1 69 49.3
Thecc.02G317400 Theobroma cacao HOM05D000312 ORTHO05D000221 3.0e-06 55.1 79 38.0
GSVIVG01010161001 Vitis vinifera HOM05D000312 ORTHO05D000221 3.0e-06 55.1 78 38.5
CSS0035521 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 3.9e-06 54.7 68 42.6
Dinv15563 Davidia involucrata HOM05D000312 ORTHO05D000221 3.9e-06 54.7 69 44.9
Dinv16567 Davidia involucrata HOM05D000312 ORTHO05D000221 3.9e-06 54.7 79 38.0
Hma1.2p1_0189F.1_g082810 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 3.9e-06 54.7 68 50.0
Lsat_1_v5_gn_1_81201 Lactuca sativa HOM05D000312 ORTHO05D000221 3.9e-06 54.7 68 39.7
Medtr1g011400 Medicago truncatula HOM05D000312 ORTHO05D000221 3.9e-06 54.7 68 42.6
Peaxi162Scf00179g00710 Petunia axillaris HOM05D000312 ORTHO05D000221 3.9e-06 54.7 79 40.5
Peaxi162Scf00881g00237 Petunia axillaris HOM05D000312 ORTHO05D000221 3.9e-06 54.7 68 47.1
DCAR_024360 Daucus carota HOM05D000312 ORTHO05D000221 5.1e-06 54.3 69 42.0
Medtr1g013280 Medicago truncatula HOM05D000312 ORTHO05D000221 5.1e-06 54.3 68 42.6
Nitab4.5_0000027g0320 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.1e-06 54.3 69 40.6
Peaxi162Scf00121g00023 Petunia axillaris HOM05D000312 ORTHO05D000221 5.1e-06 54.3 66 43.9
Peaxi162Scf00566g00715 Petunia axillaris HOM05D000312 ORTHO05D000221 5.1e-06 54.3 69 37.7
PGSC0003DMG400025113 Solanum tuberosum HOM05D000312 ORTHO05D011153 5.1e-06 54.3 68 41.2
Dinv36031 Davidia involucrata HOM05D000312 ORTHO05D000221 6.7e-06 53.9 69 44.9
Glyma.17G247500 Glycine max HOM05D000312 ORTHO05D000221 6.7e-06 53.9 68 44.1
Peaxi162Scf00121g00224 Petunia axillaris HOM05D000312 ORTHO05D000221 6.7e-06 53.9 75 42.7
Peaxi162Scf00635g00718 Petunia axillaris HOM05D000312 ORTHO05D000221 6.7e-06 53.9 68 47.1
Peaxi162Scf02754g00015 Petunia axillaris HOM05D000312 ORTHO05D000221 6.7e-06 53.9 69 49.3
PGSC0003DMG400025115 Solanum tuberosum HOM05D000312 ORTHO05D011153 6.7e-06 53.9 69 42.0
CSS0021406 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 8.7e-06 53.5 79 41.8
CSS0033318 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 8.7e-06 53.5 71 45.1
CSS0044173 Camellia sinensis var. sinensis HOM05D000312 ORTHO05D000221 8.7e-06 53.5 79 41.8
CAN.G222.8 Capsicum annuum HOM05D000312 ORTHO05D000221 8.7e-06 53.5 68 42.6
Hma1.2p1_0189F.1_g082890 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 8.7e-06 53.5 67 44.8
Lsat_1_v5_gn_1_81521 Lactuca sativa HOM05D000312 ORTHO05D000221 8.7e-06 53.5 68 41.2
Peaxi162Scf00179g00627 Petunia axillaris HOM05D000312 ORTHO05D000221 8.7e-06 53.5 68 42.6


User provided reference genes

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