Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P404T2 Lonicera japonica HOM05D002350 ORTHO05D000091 2.8e-42 174.9 89 100.0
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 3.7e-34 147.9 77 96.1
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 6.3e-26 120.6 89 73.0
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 1.1e-22 109.8 89 65.2
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 3.6e-21 104.8 89 59.6
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.4e-20 102.8 89 59.6
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.8e-20 102.4 89 60.7
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 8.8e-20 100.1 95 56.8
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.5e-19 99.4 89 57.3
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 3.4e-19 98.2 89 56.2
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 4.4e-19 97.8 81 61.7
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 5.7e-19 97.4 89 57.3
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 5.7e-19 97.4 88 59.1
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 1.3e-18 96.3 89 56.2
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 2.8e-18 95.1 89 56.2
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 8.3e-18 93.6 89 55.1
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 8.3e-18 93.6 89 52.8
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.1e-17 93.2 89 55.1
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 1.4e-17 92.8 89 52.8
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 1.4e-17 92.8 88 55.7
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.8e-17 92.4 88 59.1
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 2.4e-17 92.0 89 55.1
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 2.4e-17 92.0 89 53.9
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 3.1e-17 91.7 89 53.9
Peaxi162Scf00824g00113 Petunia axillaris HOM05D002350 ORTHO05D000091 3.1e-17 91.7 92 54.3
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 3.1e-17 91.7 92 54.3
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 3.1e-17 91.7 92 54.3
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 4.1e-17 91.3 85 54.1
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 4.1e-17 91.3 89 53.9
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 5.4e-17 90.9 88 58.0
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 7.0e-17 90.5 89 53.9
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 7.0e-17 90.5 82 57.3
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 7.0e-17 90.5 88 54.5
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 9.1e-17 90.1 84 52.4
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 1.2e-16 89.7 89 50.6
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 1.6e-16 89.4 89 52.8
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 1.6e-16 89.4 89 52.8
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 1.6e-16 89.4 89 55.1
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 2.0e-16 89.0 89 47.2
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 2.7e-16 88.6 88 52.3
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 3.5e-16 88.2 89 47.2
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 4.5e-16 87.8 89 48.3
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 5.9e-16 87.4 84 52.4
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 5.9e-16 87.4 89 49.4
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 5.9e-16 87.4 90 53.3
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 7.7e-16 87.0 89 52.8
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 7.7e-16 87.0 89 51.7
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 7.7e-16 87.0 89 46.1
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.0e-15 86.7 89 47.2
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 1.0e-15 86.7 84 54.8
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.0e-15 86.7 91 52.7
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 1.3e-15 86.3 89 47.2
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-15 86.3 89 47.2
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 1.3e-15 86.3 89 47.2
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.3e-15 86.3 89 47.2
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.3e-15 86.3 86 54.7
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.3e-15 86.3 87 51.7
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.7e-15 85.9 89 47.2
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 1.7e-15 85.9 83 54.2
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.7e-15 85.9 89 51.7
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.7e-15 85.9 89 52.8
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 1.7e-15 85.9 89 52.8
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 2.3e-15 85.5 89 47.2
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 2.9e-15 85.1 89 53.9
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 2.9e-15 85.1 89 48.3
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 2.9e-15 85.1 89 53.9
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 3.8e-15 84.7 89 44.9
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 3.8e-15 84.7 80 56.2
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 5.0e-15 84.3 89 46.1
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 5.0e-15 84.3 89 46.1
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 5.0e-15 84.3 89 46.1
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 5.0e-15 84.3 89 46.1
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 5.0e-15 84.3 89 46.1
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 46.1
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 44.9
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 44.9
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 51.7
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 47.2
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 6.6e-15 84.0 89 50.6
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 6.6e-15 84.0 88 46.6
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 6.6e-15 84.0 83 53.0
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 8.6e-15 83.6 89 44.9
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 1.5e-14 82.8 89 46.1
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.5e-14 82.8 89 42.7
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 1.5e-14 82.8 92 51.1
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.5e-14 82.8 81 55.6
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 1.5e-14 82.8 92 57.6
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 1.5e-14 82.8 89 56.2
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.9e-14 82.4 83 48.2
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.9e-14 82.4 88 48.9
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 2.5e-14 82.0 89 47.2
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.5e-14 82.0 88 47.7
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 2.5e-14 82.0 82 56.1
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 2.5e-14 82.0 88 48.9
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 3.3e-14 81.6 88 50.0
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 4.2e-14 81.3 89 44.9
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.5e-14 80.9 89 43.8
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 5.5e-14 80.9 91 46.2
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 9.5e-14 80.1 88 50.0
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 9.5e-14 80.1 83 51.8
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 1.2e-13 79.7 86 50.0
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.2e-13 79.7 89 50.6
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.2e-13 79.7 91 49.5
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.2e-13 79.7 89 44.9
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 1.2e-13 79.7 75 54.7
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 1.6e-13 79.3 89 48.3
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 1.6e-13 79.3 86 52.3
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.1e-13 79.0 89 50.6
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 2.1e-13 79.0 81 51.9
Nitab4.5_0000165g0050 Nicotiana tabacum HOM05D002350 ORTHO05D000091 2.1e-13 79.0 78 50.0
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 2.8e-13 78.6 88 50.0
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 2.8e-13 78.6 89 41.6
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.6e-13 78.2 89 49.4
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.6e-13 78.2 89 49.4
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 3.6e-13 78.2 89 47.2
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 4.7e-13 77.8 89 49.4
CAN.G160.38 Capsicum annuum HOM05D002350 ORTHO05D000091 6.1e-13 77.4 76 52.6
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 6.1e-13 77.4 89 46.1
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 6.1e-13 77.4 89 50.6
QL04p081705 Quercus lobata HOM05D002350 ORTHO05D000091 6.1e-13 77.4 84 48.8
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 8.0e-13 77.0 89 41.6
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.0e-12 76.6 88 46.6
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 1.0e-12 76.6 89 44.9
Nitab4.5_0001354g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.4e-12 76.3 76 48.7
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 3.0e-12 75.1 94 41.5
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 3.0e-12 75.1 74 52.7
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 5.2e-12 74.3 89 40.4
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 6.8e-12 73.9 89 42.7
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 6.8e-12 73.9 89 42.7
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 1.5e-11 72.8 89 42.7
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 3.4e-11 71.6 81 45.7
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 4.4e-11 71.2 89 41.6
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 4.4e-11 71.2 88 45.5
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 5.7e-11 70.9 88 40.9
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 7.5e-11 70.5 89 44.9
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 7.5e-11 70.5 89 44.9
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 7.5e-11 70.5 91 51.6
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 9.8e-11 70.1 89 44.9
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 9.8e-11 70.1 83 51.8
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.3e-10 69.7 75 42.7
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-10 69.7 95 37.9
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 1.3e-10 69.7 74 51.4
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 1.7e-10 69.3 88 46.6
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 1.7e-10 69.3 82 47.6
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 2.2e-10 68.9 88 45.5
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 3.7e-10 68.2 89 40.4
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 1.4e-09 66.2 83 49.4
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 2.4e-09 65.5 64 46.9
BolC8t51797H Brassica oleracea HOM05D002350 ORTHO05D000091 3.1e-09 65.1 65 47.7
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 4.1e-09 64.7 66 53.0
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 3.5e-08 61.6 89 38.2
A01p33760 Brassica napus HOM05D002350 ORTHO05D000091 2.9e-07 58.5 65 44.6
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.1e-06 56.6 89 41.6
AagrBONN_evm.TU.Sc2ySwM_117.901 Anthoceros agrestis HOM05D000349 ORTHO05D000620 7.3e-06 53.9 79 38.0
MBI04_g40930_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 9.5e-06 53.5 100 38.0
Mapoly0048s0033 Marchantia polymorpha HOM05D002350 ORTHO05D000091 9.5e-06 53.5 90 37.8


User provided reference genes

Program Settings