Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.0e-90 336.7 163 100.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 3.2e-84 315.1 163 89.6
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 3.2e-84 315.1 163 89.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 6.7e-82 307.4 163 87.7
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 5.6e-81 304.3 163 85.9
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.6e-80 302.8 163 85.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.1e-80 302.4 162 87.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 6.2e-80 300.8 163 84.7
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 8.2e-80 300.4 163 82.8
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.1e-79 300.1 163 85.9
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 2.4e-79 298.9 163 85.3
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.0e-79 298.1 163 85.3
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 6.9e-79 297.4 163 84.7
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.2e-78 296.6 163 84.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.2e-78 296.6 163 84.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.0e-78 295.8 163 83.4
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.5e-78 294.7 163 84.0
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-77 293.5 162 84.0
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.7e-77 292.7 162 84.0
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.9e-77 292.0 159 84.9
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 2.5e-76 288.9 163 81.6
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.5e-76 287.7 154 87.0
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 7.1e-76 287.3 149 87.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 7.1e-76 287.3 163 82.2
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 9.3e-76 287.0 154 86.4
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.3e-76 287.0 163 82.8
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.2e-75 286.6 163 80.4
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.2e-75 286.6 151 86.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.6e-75 286.2 151 86.1
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.6e-75 286.2 154 85.7
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.6e-75 284.6 163 79.8
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 4.6e-75 284.6 153 85.0
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 6.1e-75 284.3 163 82.2
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.0e-74 283.5 163 81.0
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.8e-74 282.7 154 84.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.9e-74 281.6 163 81.6
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 80.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 79.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.5e-73 278.9 149 85.9
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.5e-73 278.9 149 85.9
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 7.4e-73 277.3 163 81.0
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 9.7e-73 276.9 163 77.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 79.8
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.6e-72 276.2 147 87.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 77.9
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 77.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.1e-71 273.5 163 79.8
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.1e-71 273.5 163 76.1
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 5.3e-71 271.2 163 75.5
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 76.7
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 74.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 78.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 9.0e-71 270.4 163 77.9
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.2e-70 270.0 163 78.5
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 74.2
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 75.5
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 75.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 3.4e-70 268.5 163 74.8
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.9e-70 267.7 163 74.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 7.7e-70 267.3 163 76.7
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 78.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 74.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 74.2
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 73.6
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 72.4
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 6.5e-69 264.2 165 76.4
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.5e-69 264.2 165 76.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 6.5e-69 264.2 163 74.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 8.5e-69 263.8 165 76.4
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-68 263.5 165 76.4
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.1e-68 263.5 152 79.6
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.9e-68 262.7 163 73.0
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 4.2e-68 261.5 165 75.8
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 4.2e-68 261.5 151 78.1
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 7.2e-68 260.8 162 74.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 9.4e-68 260.4 163 76.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.6e-67 258.5 149 79.2
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.1e-67 257.7 163 75.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.8e-66 256.1 149 79.9
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 3.9e-66 255.0 157 73.9
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.7e-66 254.2 139 82.7
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 6.7e-66 254.2 153 75.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 6.7e-66 254.2 153 75.2
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-65 253.4 152 76.3
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.5e-65 253.1 163 72.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.0e-65 252.7 144 79.9
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 3.3e-65 251.9 164 72.0
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 5.7e-65 251.1 149 76.5
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-64 250.0 153 73.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.3e-64 250.0 178 68.5
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.7e-64 249.6 165 71.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-64 249.2 152 73.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 3.7e-64 248.4 165 70.3
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 4.8e-64 248.1 163 71.2
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.4e-63 246.5 165 70.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.4e-63 245.7 144 77.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.4e-63 245.7 144 77.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 5.3e-63 244.6 165 70.9
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.3e-63 244.6 141 78.0
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 9.1e-63 243.8 146 76.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.5e-62 243.0 165 69.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.5e-62 241.5 144 77.1
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.0e-61 240.4 165 68.5
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.9e-61 238.8 137 78.1
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 5.0e-61 238.0 164 68.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 6.5e-61 237.7 160 70.6
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 8.5e-61 237.3 163 68.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.5e-60 235.7 165 68.5
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.3e-58 229.2 139 74.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.9e-58 228.4 124 84.7
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 8.8e-58 227.3 144 72.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 8.8e-58 227.3 136 74.3
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.6e-57 225.7 163 71.2
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 9.1e-55 217.2 163 62.0
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-51 206.5 163 63.2
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.1e-51 206.1 109 88.1
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.4e-47 192.6 163 54.6
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 3.1e-47 192.2 163 54.0
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 4.2e-44 181.8 163 58.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.6e-43 179.9 123 69.1
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.0e-42 175.3 129 65.1
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.2e-40 169.5 103 76.7
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 7.0e-39 164.5 123 62.6
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.6e-38 163.3 150 54.7
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 3.5e-38 162.2 164 50.0
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 4.5e-38 161.8 164 50.6
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 4.5e-38 161.8 97 77.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 5.9e-38 161.4 163 52.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.0e-37 160.6 176 54.0
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.7e-37 159.8 176 54.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 5.5e-36 154.8 126 57.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.0e-34 150.6 164 48.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 4.0e-34 148.7 165 46.7
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.4e-33 145.2 137 57.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.0e-30 136.3 90 70.0
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.4e-25 118.6 139 43.9
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.7e-24 116.7 67 83.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-16 89.4 62 66.1
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.0e-13 78.6 53 67.9
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 2.5e-12 76.3 62 62.9
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.1e-11 73.2 58 60.3
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.8e-11 72.8 120 35.0
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.3e-08 63.9 48 56.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 8.3e-08 61.2 43 67.4


User provided reference genes

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