Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.2e-195 684.5 339 100.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.3e-132 476.9 352 68.2
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.0e-128 463.0 350 65.4
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.3e-127 460.3 350 66.3
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.7e-127 459.9 353 65.4
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 5.4e-126 454.9 350 64.9
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.5e-125 452.2 350 66.0
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.7e-124 449.9 352 62.2
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.9e-124 448.7 351 63.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.9e-123 446.4 350 62.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 5.6e-123 444.9 350 61.7
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 9.5e-123 444.1 350 62.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.1e-121 440.7 356 64.6
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.8e-121 439.9 350 64.6
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.8e-121 439.9 351 62.1
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.0e-121 438.7 350 60.3
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 4.0e-121 438.7 351 62.4
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.0e-120 436.4 351 62.1
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 7.5e-120 434.5 350 59.4
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.3e-119 433.7 352 63.1
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 6.4e-119 431.4 350 59.4
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.1e-118 430.6 352 61.4
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.9e-118 429.9 350 60.9
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 5.4e-118 428.3 356 61.2
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 5.4e-118 428.3 352 62.8
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 7.0e-118 427.9 350 62.0
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 9.2e-118 427.6 350 61.7
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.2e-117 427.2 352 61.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.2e-117 427.2 354 59.6
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.2e-117 427.2 355 62.5
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.0e-116 424.1 350 62.9
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 3.9e-116 422.2 364 59.3
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.5e-115 420.2 350 59.4
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.1e-114 416.4 353 61.2
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 6.2e-114 414.8 357 59.1
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-113 413.7 350 60.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.3e-113 412.9 353 59.5
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.3e-113 412.9 353 60.3
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.0e-113 412.1 361 58.2
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 5.2e-113 411.8 356 58.7
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.9e-113 411.0 358 59.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.2e-112 410.6 350 60.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.5e-112 410.2 355 59.2
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-112 410.2 350 60.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-112 410.2 350 60.9
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-112 410.2 354 59.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.6e-112 409.5 350 60.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.6e-112 409.5 350 60.9
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.6e-112 409.5 354 59.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 3.4e-112 409.1 352 60.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.2e-111 406.4 354 59.3
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.9e-111 406.0 354 60.2
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 3.7e-111 405.6 355 58.0
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.7e-111 405.6 355 59.7
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.4e-111 404.8 349 60.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 8.3e-111 404.4 359 60.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.2e-109 400.6 337 60.5
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.1e-109 399.8 367 56.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.0e-108 397.5 355 59.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.3e-108 397.1 350 57.4
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 6.6e-108 394.8 357 56.9
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 8.6e-108 394.4 356 58.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 8.6e-108 394.4 356 58.1
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.5e-107 392.9 352 57.4
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.2e-106 390.6 356 56.5
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.8e-106 389.4 346 58.4
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.8e-106 389.4 361 56.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.6e-106 389.0 352 57.4
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 4.7e-106 388.7 352 57.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 4.7e-106 388.7 357 57.4
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 8.1e-106 387.9 355 57.2
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 1.4e-105 387.1 352 56.8
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.4e-105 387.1 358 58.1
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.4e-105 387.1 352 56.8
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.4e-105 386.3 346 57.8
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 4.0e-105 385.6 351 58.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-104 384.0 346 57.5
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.0e-104 383.3 348 57.5
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 7.6e-104 381.3 352 55.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.9e-103 379.4 347 57.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.9e-103 379.4 351 56.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 3.8e-103 379.0 363 56.7
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 3.2e-102 375.9 353 55.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 5.4e-102 375.2 352 54.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.4e-102 375.2 352 56.8
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 9.2e-102 374.4 353 57.8
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.2e-101 374.0 352 54.5
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.6e-101 373.6 352 54.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 2.7e-101 372.9 355 56.6
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 3.5e-101 372.5 352 54.3
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 4.6e-101 372.1 356 55.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 2.3e-100 369.8 345 55.4
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 5.1e-100 368.6 352 54.0
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.5e-99 367.1 351 56.4
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.3e-99 365.9 347 55.9
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 3.6e-98 362.5 361 54.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 8.1e-98 361.3 349 55.3
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 1.8e-97 360.1 344 55.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 4.4e-96 355.5 358 53.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.3e-94 347.8 347 53.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-92 344.4 349 53.0
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.3e-91 339.0 331 55.3
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 9.6e-91 337.8 331 55.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.2e-86 322.8 370 47.8
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.0e-85 318.5 345 52.2
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.4e-81 307.4 267 58.4
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.2e-78 296.2 346 47.4
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 3.9e-76 289.3 344 47.1
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.5e-75 286.6 264 53.0
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 7.4e-75 285.0 346 44.8
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 4.9e-71 272.3 435 40.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.5e-70 268.9 367 42.0
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.5e-69 266.2 339 44.8
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.3e-66 255.4 350 41.1
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 5.3e-65 252.3 336 41.4
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 3.0e-60 236.5 343 40.5
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 3.3e-59 233.0 354 39.5
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 2.1e-53 213.8 185 56.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.7e-53 213.4 182 57.7
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 3.6e-53 213.0 224 52.7
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.1e-49 201.4 193 49.2
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.0e-44 183.3 261 39.8
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.6e-43 180.3 156 59.0
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 9.7e-43 178.3 160 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.6e-40 170.2 236 41.5
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 3.3e-35 153.3 141 55.3
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 7.5e-35 152.1 111 64.9
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.7e-34 151.0 111 64.0
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.1e-33 148.3 292 32.5
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-28 131.3 108 60.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 7.5e-27 125.6 217 41.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 6.3e-26 122.5 107 57.9
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.7e-24 117.1 74 70.3
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.7e-24 117.1 74 70.3
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.5e-24 116.7 74 68.9
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.1e-21 107.5 74 63.5
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.0e-20 105.1 79 63.3
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-20 104.4 110 47.3
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 6.3e-18 95.9 282 26.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.3e-14 83.6 49 71.4
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.1e-13 80.9 134 44.0
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.1e-13 80.9 65 61.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.8e-13 80.5 65 61.5
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.8e-12 75.9 59 61.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-11 74.7 96 46.9
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-11 74.7 96 46.9
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.6e-11 73.9 67 56.7
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 3.4e-11 73.6 85 49.4
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 6.4e-10 69.3 58 60.3


User provided reference genes

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