Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.9e-107 392.5 195 100.0
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.9e-46 189.9 207 55.1
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 9.2e-46 187.6 206 54.4
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.6e-42 175.6 202 53.0
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.1e-42 174.5 209 50.7
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.1e-41 174.1 195 51.8
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 6.8e-41 171.4 203 50.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.2e-40 170.6 205 47.3
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.0e-40 169.9 205 49.8
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.6e-40 169.5 205 47.3
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.6e-40 169.5 205 46.8
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.8e-40 168.3 200 49.5
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.8e-40 168.3 200 49.5
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 5.8e-40 168.3 203 50.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 8.4e-39 164.5 211 48.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 8.4e-39 164.5 207 48.3
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 8.4e-39 164.5 205 50.2
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.4e-38 161.8 202 48.5
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.4e-38 161.8 202 48.5
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 7.1e-38 161.4 210 47.6
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 7.1e-38 161.4 206 44.2
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.2e-37 160.6 206 51.0
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.2e-37 160.6 210 47.6
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 2.7e-37 159.5 206 46.1
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.7e-37 159.5 209 48.3
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.7e-37 159.5 210 50.0
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.7e-37 159.5 196 50.0
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 7.8e-37 157.9 205 44.9
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.3e-36 157.1 202 48.5
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.3e-36 157.1 200 46.5
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.3e-36 156.4 209 48.8
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 3.9e-36 155.6 202 49.0
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 5.1e-36 155.2 209 48.3
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 6.6e-36 154.8 210 45.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 4.3e-35 152.1 210 46.7
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 5.6e-35 151.8 207 46.4
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 7.3e-35 151.4 203 44.8
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 9.6e-35 151.0 206 45.6
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.6e-34 150.2 209 47.8
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 2.1e-34 149.8 208 45.7
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.8e-34 149.4 208 46.6
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.2e-34 148.3 201 42.8
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.1e-33 147.5 206 44.7
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.4e-33 147.1 209 43.1
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.1e-33 146.0 207 45.9
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.2e-33 145.2 207 41.1
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 6.9e-33 144.8 208 42.3
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 6.9e-33 144.8 208 43.8
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.2e-32 144.1 209 44.5
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 2.0e-32 143.3 207 44.4
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.0e-32 143.3 207 44.4
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.0e-32 143.3 179 47.5
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.6e-32 142.9 207 40.1
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 3.4e-32 142.5 208 44.2
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.4e-32 142.1 207 43.5
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 5.8e-32 141.7 198 44.9
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.6e-32 141.4 207 44.9
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 7.6e-32 141.4 207 42.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 7.6e-32 141.4 205 43.9
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 7.6e-32 141.4 200 44.0
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 9.9e-32 141.0 208 42.8
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.9e-32 141.0 207 44.0
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.9e-32 141.0 207 44.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 9.9e-32 141.0 208 44.2
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-31 140.6 208 42.3
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-31 140.6 206 45.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 2.2e-31 139.8 207 42.5
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 8.4e-31 137.9 209 43.1
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.1e-30 137.5 209 45.0
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.1e-30 137.5 209 42.6
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.4e-30 137.1 218 41.3
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.9e-30 136.7 208 45.2
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.4e-30 136.3 208 41.3
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.2e-30 136.0 211 43.1
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 4.2e-30 135.6 209 45.0
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 7.1e-30 134.8 213 41.8
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 9.3e-30 134.4 212 39.6
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.1e-29 133.3 210 41.0
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 2.1e-29 133.3 202 42.6
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.7e-29 132.9 208 42.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.0e-28 131.0 210 45.2
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 1.3e-28 130.6 210 41.0
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.3e-28 130.6 207 41.1
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.3e-28 130.6 208 41.8
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.7e-28 130.2 198 39.4
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-28 130.2 209 42.6
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 2.3e-28 129.8 212 42.0
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.3e-28 129.8 197 39.6
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 3.0e-28 129.4 212 41.5
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 3.0e-28 129.4 212 41.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-27 127.1 207 41.5
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-27 127.1 207 41.5
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-27 127.1 187 39.0
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 7.3e-27 124.8 210 40.5
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.1e-26 123.2 214 38.8
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 2.8e-26 122.9 210 40.0
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 6.2e-26 121.7 209 41.6
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.4e-25 120.6 204 42.6
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.8e-25 120.2 207 41.1
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 2.4e-25 119.8 209 41.1
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 3.1e-25 119.4 191 40.3
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 5.3e-25 118.6 209 41.1
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 9.0e-25 117.9 186 39.8
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.5e-24 117.1 209 41.1
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 9.9e-24 114.4 173 42.2
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.9e-23 112.1 198 39.9
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 7.1e-22 108.2 205 35.1
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.7e-21 106.3 204 36.8
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 4.6e-21 105.5 176 37.5
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 3.9e-20 102.4 209 36.4
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.9e-20 102.4 217 34.1
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 5.1e-20 102.1 209 36.4
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 5.1e-20 102.1 209 36.4
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.1e-19 100.9 208 35.1
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.1e-19 100.9 208 35.1
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.9e-19 100.1 216 35.2
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 7.4e-19 98.2 209 35.9
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 3.7e-18 95.9 213 32.9
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 4.8e-18 95.5 217 33.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 4.8e-18 95.5 207 33.8
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 4.8e-18 95.5 184 36.4
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 6.2e-18 95.1 198 33.8
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.1e-17 94.4 207 33.8
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 3.1e-17 92.8 203 35.5
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.1e-14 84.3 175 34.9
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.4e-14 84.0 204 32.4
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.2e-14 82.4 176 36.4
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.3e-12 77.4 204 31.9
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 2.3e-12 76.6 173 31.2
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 9.6e-11 71.2 207 31.9
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 9.6e-11 71.2 211 31.3
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 9.0e-09 64.7 100 43.0
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 2.6e-08 63.2 216 25.9
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 3.4e-08 62.8 176 29.0
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 5.8e-08 62.0 159 30.8
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.0e-07 61.2 115 38.3
SGA_v2.0_scaffold144G35938 Striga asiatica HOM05D002082 ORTHO05D002130 1.0e-07 61.2 166 33.1
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 2.9e-07 59.7 174 27.0
PSO384G3367 Papaver somniferum HOM05D002515 ORTHO05D002722 2.9e-07 59.7 176 28.4
SGA_v2.0_scaffold4G02315 Striga asiatica HOM05D002082 ORTHO05D002130 2.9e-07 59.7 201 27.9
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 2.5e-06 56.6 142 31.0


User provided reference genes

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