Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 2.3e-58 228.8 125 100.0
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 4.0e-26 121.7 123 61.0
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 1.7e-24 116.3 123 56.9
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 1.1e-23 113.6 130 56.9
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 7.0e-23 110.9 128 57.0
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 6.0e-22 107.8 123 52.8
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 6.0e-22 107.8 126 54.8
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 1.0e-21 107.1 130 51.5
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 1.0e-21 107.1 122 52.5
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 3.9e-21 105.1 113 54.9
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 8.6e-21 104.0 129 53.5
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 5.6e-20 101.3 134 53.7
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 5.6e-20 101.3 122 52.5
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.6e-19 99.8 123 60.2
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.6e-19 99.8 122 51.6
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 1.6e-19 99.8 112 55.4
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 1.6e-19 99.8 113 53.1
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 6.2e-19 97.8 133 49.6
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 6.2e-19 97.8 122 51.6
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 8.0e-19 97.4 123 56.9
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 8.0e-19 97.4 127 52.0
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 1.8e-18 96.3 102 56.9
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 3.1e-18 95.5 127 49.6
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 3.1e-18 95.5 108 55.6
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 5.2e-18 94.7 123 57.7
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 1.2e-17 93.6 113 51.3
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 4.4e-17 91.7 137 50.4
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 5.8e-17 91.3 102 52.0
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 7.5e-17 90.9 121 51.2
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 7.5e-17 90.9 96 55.2
Oeu064592.1 Olea europaea HOM05D008224 ORTHO05D010083 9.8e-17 90.5 115 52.2
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 2.9e-16 89.0 93 57.0
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 1.9e-15 86.3 94 55.3
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 1.9e-15 86.3 110 48.2
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 2.4e-15 85.9 89 53.9
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 3.2e-15 85.5 126 49.2
Gorai.003G009900 Gossypium raimondii HOM05D008224 ORTHO05D010083 3.2e-15 85.5 121 45.5
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 3.2e-15 85.5 118 48.3
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 5.4e-15 84.7 119 44.5
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 9.2e-15 84.0 100 53.0
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 4.6e-14 81.6 88 53.4
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 6.0e-14 81.3 106 54.7
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 1.7e-13 79.7 130 43.1
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 1.7e-13 79.7 130 43.1
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 8.6e-13 77.4 100 47.0
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 1.5e-12 76.6 100 51.0
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 3.3e-12 75.5 97 46.4
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 5.6e-12 74.7 88 52.3
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 5.6e-12 74.7 119 41.2
CsaV3_6G047070 Cucumis sativus L. HOM05D008224 ORTHO05D010083 5.6e-12 74.7 122 41.8
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 5.6e-12 74.7 98 48.0
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 1.2e-11 73.6 104 47.1
ECA246G4291 Erigeron canadensis HOM05D008224 ORTHO05D010083 1.6e-11 73.2 139 40.3
Rhsim10G0212800 Rhododendron simsii HOM05D008224 ORTHO05D010083 4.7e-11 71.6 101 48.5
Actinidia17446 Actinidia chinensis HOM05D008224 ORTHO05D010083 6.2e-11 71.2 93 47.3
Hma1.2p1_0956F.1_g241380 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 6.2e-11 71.2 94 50.0
Hma1.2p1_2239F.1_g317816 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 6.2e-11 71.2 94 50.0
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 6.2e-11 71.2 90 53.3
ATR0627G002 Amborella trichopoda HOM05D008224 ORTHO05D010083 8.1e-11 70.9 128 38.3
ClCG01G020280 Citrullus lanatus HOM05D008224 ORTHO05D010083 8.1e-11 70.9 121 38.8
Lsat_1_v5_gn_3_74461 Lactuca sativa HOM05D008224 ORTHO05D010083 1.1e-10 70.5 124 50.0
AL8G45290 Arabidopsis lyrata HOM05D014245 ORTHO05D010083 1.4e-10 70.1 100 43.0
ATR0481G006 Amborella trichopoda HOM05D008224 ORTHO05D010083 3.1e-10 68.9 128 38.3
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 4.0e-10 68.6 102 44.1
Sed0025479 Sechium edule HOM05D008224 ORTHO05D010083 6.8e-10 67.8 83 47.0
A06p26690 Brassica napus HOM05D014245 ORTHO05D010083 2.6e-09 65.9 103 41.7
MELO3C007900.2 Cucumis melo HOM05D008224 ORTHO05D010083 4.4e-09 65.1 100 42.0
Gohir.A02G170400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 9.9e-09 63.9 46 67.4
Gohir.D03G009600 Gossypium hirsutum HOM05D008224 ORTHO05D010083 9.9e-09 63.9 46 67.4
BcaB02g10776 Brassica carinata HOM05D014245 ORTHO05D010083 2.2e-08 62.8 98 41.8
Sed0001082 Sechium edule HOM05D008224 ORTHO05D010083 1.4e-07 60.1 121 44.6
EL10Ac6g15476 Beta vulgaris HOM05D008224 ORTHO05D010083 5.4e-07 58.2 125 37.6
Sc16g0002160 Simmondsia chinensis HOM05D008224 ORTHO05D010083 3.5e-06 55.5 93 51.6


User provided reference genes

Program Settings