Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P206T16 Lonicera japonica HOM05D004004 ORTHO05D003284 1.6e-51 206.1 126 100.0
CSS0049012 Camellia sinensis var. sinensis HOM05D004004 ORTHO05D003284 5.8e-25 117.9 121 59.5
Dinv40018 Davidia involucrata HOM05D004004 ORTHO05D003284 1.9e-23 112.8 120 49.2
TWI53G0327 Tripterygium wilfordii HOM05D004004 ORTHO05D003284 6.6e-21 104.4 120 66.7
PGR119G0532 Punica granatum HOM05D004004 ORTHO05D003284 1.9e-20 102.8 120 55.0
Haze_03875 Corylus avellana HOM05D004004 ORTHO05D003284 2.5e-20 102.4 120 45.0
Haze_03857 Corylus avellana HOM05D004004 ORTHO05D003284 4.3e-20 101.7 120 45.0
MD15G1256400 Malus domestica HOM05D004004 ORTHO05D003284 5.6e-20 101.3 121 60.3
Cfa006895 Carpinus fangiana HOM05D004004 ORTHO05D003284 2.8e-19 99.0 120 45.0
Ciclev10027136m.g Citrus clementina HOM05D004004 ORTHO05D003284 2.8e-19 99.0 120 47.5
Duzib187G1158 Durio zibethinus HOM05D004004 ORTHO05D003284 6.2e-19 97.8 103 48.5
Sopen02g029610 Solanum pennellii HOM05D004004 ORTHO05D003284 1.8e-18 96.3 120 46.7
HanXRQChr14g0440621 Helianthus annuus HOM05D004004 ORTHO05D003284 9.0e-18 94.0 113 70.8
CiPaw.07G049200 Carya illinoinensis HOM05D004004 ORTHO05D003284 1.5e-17 93.2 120 42.5
Solyc02g084940.1 Solanum lycopersicum HOM05D004004 ORTHO05D003284 1.5e-17 93.2 121 55.4
Eucgr.I02406 Eucalyptus grandis HOM05D004004 ORTHO05D003284 2.6e-17 92.4 120 52.5
Cpa.g.sc6.165 Carica papaya HOM05D004004 ORTHO05D003284 3.4e-17 92.0 120 49.2
CiPaw.08G139700 Carya illinoinensis HOM05D004004 ORTHO05D003284 3.4e-17 92.0 119 45.4
Migut.L00026 Erythranthe guttata HOM05D004004 ORTHO05D003284 4.4e-17 91.7 121 43.0
Lsat_1_v5_gn_2_77720 Lactuca sativa HOM05D004004 ORTHO05D003284 5.8e-17 91.3 119 58.0
Lj2g0016762 Lotus japonicus HOM05D004004 ORTHO05D003284 7.6e-17 90.9 124 51.6
Peaxi162Scf00418g00071 Petunia axillaris HOM05D004004 ORTHO05D003284 7.6e-17 90.9 48 83.3
QL06p035435 Quercus lobata HOM05D004004 ORTHO05D003284 7.6e-17 90.9 118 56.8
Potri.005G120200 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.3e-16 90.1 120 55.8
Prupe.7G158500 Prunus persica HOM05D004004 ORTHO05D003284 2.2e-16 89.4 48 83.3
Nitab4.5_0003001g0020 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.9e-16 89.0 48 83.3
Nitab4.5_0005980g0010 Nicotiana tabacum HOM05D004004 ORTHO05D003284 2.9e-16 89.0 48 81.2
RcHm_v2.0_Chr2g0100871 Rosa chinensis HOM05D004004 ORTHO05D003284 2.9e-16 89.0 48 83.3
ECA238G4041 Erigeron canadensis HOM05D004004 ORTHO05D003284 3.8e-16 88.6 48 79.2
Phvul.002G033800 Phaseolus vulgaris HOM05D004004 ORTHO05D003284 4.9e-16 88.2 125 57.6
PGSC0003DMG400038828 Solanum tuberosum HOM05D004004 ORTHO05D003284 4.9e-16 88.2 48 79.2
Cfa006894 Carpinus fangiana HOM05D004004 ORTHO05D003284 6.4e-16 87.8 126 48.4
FAN28G2460 Fragaria x ananassa HOM05D004004 ORTHO05D003284 1.1e-15 87.0 47 83.0
SalBow5G1136 Salvia bowleyana HOM05D004004 ORTHO05D003284 1.9e-15 86.3 47 78.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.4e-15 85.9 47 80.9
FAN23G2735 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.4e-15 85.9 47 80.9
FAN26G1971 Fragaria x ananassa HOM05D008813 ORTHO05D003284 2.4e-15 85.9 48 81.2
Gohir.D12G062800 Gossypium hirsutum HOM05D004004 ORTHO05D003284 2.4e-15 85.9 46 80.4
Duzib147G0117 Durio zibethinus HOM05D004004 ORTHO05D003284 4.2e-15 85.1 120 63.3
Glyma.11G071500 Glycine max HOM05D004004 ORTHO05D003284 4.2e-15 85.1 125 54.4
FvH4_1g12761 Fragaria vesca HOM05D004004 ORTHO05D003284 5.4e-15 84.7 47 78.7
Potri.007G021200 Populus trichocarpa HOM05D004004 ORTHO05D003284 5.4e-15 84.7 122 50.0
Gohir.A12G062900 Gossypium hirsutum HOM05D004004 ORTHO05D003284 7.1e-15 84.3 46 78.3
Gorai.008G065800 Gossypium raimondii HOM05D004004 ORTHO05D003284 7.1e-15 84.3 46 78.3
Manes.01G138700 Manihot esculenta HOM05D004004 ORTHO05D003284 9.3e-15 84.0 120 63.3
Actinidia19203 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.7e-14 82.4 43 83.7
Sabra07G0018100 Salix brachista HOM05D004004 ORTHO05D003284 2.7e-14 82.4 47 78.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.5e-14 82.0 47 72.3
TPR.G2394 Trifolium pratense HOM05D004004 ORTHO05D003284 1.0e-13 80.5 124 40.3
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 1.7e-13 79.7 121 43.8
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 2.3e-13 79.3 104 60.6
MD02G1143000 Malus domestica HOM05D004004 ORTHO05D003284 2.3e-13 79.3 46 76.1
Thecc.01G030100 Theobroma cacao HOM05D004004 ORTHO05D003284 2.3e-13 79.3 107 59.8
CAN.G358.44 Capsicum annuum HOM05D004004 ORTHO05D003284 1.5e-12 76.6 44 75.0
Lsat_1_v5_gn_2_77660 Lactuca sativa HOM05D004004 ORTHO05D003284 1.5e-12 76.6 43 83.7
HanXRQChr14g0440601 Helianthus annuus HOM05D004004 ORTHO05D003284 1.9e-12 76.3 48 77.1
Medtr5g020960 Medicago truncatula HOM05D004004 ORTHO05D003284 2.5e-12 75.9 47 72.3
Nn5g29686 Nelumbo nucifera HOM05D004004 ORTHO05D003284 4.3e-12 75.1 45 66.7
DCAR_025966 Daucus carota HOM05D004004 ORTHO05D003284 5.6e-12 74.7 48 75.0
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 7.4e-12 74.3 48 68.8
TAR381G1189 Trochodendron aralioides HOM05D004004 ORTHO05D003284 9.6e-12 73.9 43 74.4
VMungo1215G3070 Vigna mungo HOM05D004004 ORTHO05D003284 1.3e-11 73.6 44 75.0
Aqoxy6G01170 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 2.1e-11 72.8 120 52.5
Aqoxy6G01169 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 6.2e-11 71.2 43 74.4
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 8.1e-11 70.9 47 59.6
ECA238G0774 Erigeron canadensis HOM05D004004 ORTHO05D003284 1.1e-10 70.5 46 69.6
CiPaw.08G139600 Carya illinoinensis HOM05D004004 ORTHO05D003284 1.8e-10 69.7 44 65.9
Manes.02G097000 Manihot esculenta HOM05D004004 ORTHO05D003284 2.4e-10 69.3 47 68.1
Nn1g04907 Nelumbo nucifera HOM05D004004 ORTHO05D003284 3.1e-10 68.9 45 62.2
Psat2g157480 Pisum sativum HOM05D010322 ORTHO05D012006 5.3e-10 68.2 48 62.5
ClCG01G019820 Citrullus lanatus HOM05D004004 ORTHO05D003284 9.0e-10 67.4 51 62.7
MELO3C007853.2 Cucumis melo HOM05D004004 ORTHO05D003284 9.0e-10 67.4 51 62.7
PSO675G0710 Papaver somniferum HOM05D004004 ORTHO05D003284 1.2e-09 67.0 44 65.9
Os04g0661100 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 1.5e-09 66.6 43 69.8
CsaV3_6G046550 Cucumis sativus L. HOM05D004004 ORTHO05D003284 5.8e-09 64.7 51 60.8
Sed0026549 Sechium edule HOM05D004004 ORTHO05D003284 9.9e-09 63.9 51 62.7
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 1.7e-08 63.2 45 62.2
Zm00001eb432750 Zea mays HOM05D004004 ORTHO05D003284 1.7e-08 63.2 48 60.4
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 1.4e-07 60.1 50 46.0
Psat2g157520 Pisum sativum HOM05D004004 ORTHO05D003284 1.9e-07 59.7 47 55.3
Dinv42931 Davidia involucrata HOM05D004004 ORTHO05D003284 2.4e-07 59.3 50 44.0
Dinv43169 Davidia involucrata HOM05D004004 ORTHO05D003284 2.4e-07 59.3 50 44.0
Rhsim07G0216700 Rhododendron simsii HOM05D004004 ORTHO05D003284 3.2e-07 58.9 52 44.2
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 4.2e-07 58.5 53 47.2
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 4.2e-07 58.5 47 57.4
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 4.2e-07 58.5 47 46.8
GSVIVG01036224001 Vitis vinifera HOM05D004004 ORTHO05D003284 4.2e-07 58.5 50 44.0
Ah.02g125000 Amaranthus hybridus HOM05D004004 ORTHO05D003284 5.5e-07 58.2 46 56.5
vmacro22230 Vaccinium macrocarpon HOM05D004004 ORTHO05D003284 7.1e-07 57.8 47 51.1
Dinv42932 Davidia involucrata HOM05D004004 ORTHO05D003284 9.3e-07 57.4 50 42.0
Dinv43168 Davidia involucrata HOM05D004004 ORTHO05D003284 9.3e-07 57.4 50 42.0
Rhsim07G0216600 Rhododendron simsii HOM05D004004 ORTHO05D003284 9.3e-07 57.4 48 43.8
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 1.2e-06 57.0 52 44.2
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.6e-06 56.6 48 52.1
Hund05396 Selenicereus undatus HOM05D004004 ORTHO05D003284 1.6e-06 56.6 48 47.9
Aqoxy6G01171 Aquilegia oxysepala HOM05D000126 ORTHO05D003284 2.1e-06 56.2 45 51.1
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 2.7e-06 55.8 47 44.7
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.7e-06 55.8 47 44.7
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.7e-06 55.8 47 44.7
Nn1g09210 Nelumbo nucifera HOM05D004004 ORTHO05D003284 4.6e-06 55.1 47 44.7
Oeu025680.1 Olea europaea HOM05D004004 ORTHO05D003284 6.0e-06 54.7 50 42.0
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 7.9e-06 54.3 44 47.7


User provided reference genes

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