Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.0e-94 349.7 273 100.0
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.1e-68 264.2 273 84.2
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.1e-64 250.0 277 82.7
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 4.7e-64 248.8 270 81.9
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.1e-63 247.7 276 84.1
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.4e-62 242.3 271 54.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.9e-61 239.6 273 81.0
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 6.4e-61 238.4 269 82.9
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.4e-61 238.4 268 82.8
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.3e-61 238.0 272 83.5
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.3e-61 238.0 272 83.5
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 8.3e-61 238.0 275 82.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.4e-60 237.3 267 82.8
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.4e-60 237.3 267 82.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.4e-60 237.3 273 82.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.4e-60 237.3 273 80.6
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.4e-60 236.5 268 82.5
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.2e-60 236.1 267 82.4
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.1e-60 235.7 267 82.0
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.1e-60 235.7 267 82.4
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.1e-60 235.7 267 82.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.4e-60 235.3 274 81.4
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.1e-60 235.0 273 81.7
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.1e-59 233.4 273 81.3
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 3.5e-59 232.6 268 80.2
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 4.6e-59 232.3 273 81.3
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 4.6e-59 232.3 273 81.3
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 73.1
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 81.3
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-58 230.7 273 81.0
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.7e-58 230.3 268 82.5
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.0e-58 229.6 271 80.4
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.0e-58 229.6 273 79.9
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 3.9e-58 229.2 273 79.5
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.1e-58 228.8 273 80.6
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 6.6e-58 228.4 272 79.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 6.6e-58 228.4 268 79.1
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-57 227.6 268 82.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.1e-57 227.6 273 78.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.1e-57 227.6 268 81.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-57 227.3 268 81.3
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.9e-57 226.9 269 78.8
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.9e-57 226.9 276 79.7
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.3e-57 226.1 273 77.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 5.6e-57 225.3 245 85.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 5.6e-57 225.3 251 85.3
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.6e-57 225.3 268 81.3
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.6e-57 225.3 268 81.3
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 5.6e-57 225.3 268 78.4
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.6e-57 225.3 273 79.9
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 7.3e-57 224.9 275 79.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 9.5e-57 224.6 268 79.1
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.2e-56 224.2 251 85.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.6e-56 223.8 257 84.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.1e-56 223.4 268 80.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.6e-56 222.6 274 78.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 4.7e-56 222.2 267 80.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 4.7e-56 222.2 250 84.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 79.9
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.8e-55 220.3 277 77.3
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 79.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 6.8e-55 218.4 271 77.9
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 6.8e-55 218.4 271 77.9
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 6.8e-55 218.4 271 77.9
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 6.8e-55 218.4 271 77.9
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 8.9e-55 218.0 271 77.5
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.5e-54 217.2 266 79.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.5e-54 217.2 271 77.5
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 276 71.0
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 3.4e-54 216.1 267 79.4
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 4.4e-54 215.7 270 78.5
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 9.9e-54 214.5 251 81.7
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 9.9e-54 214.5 268 80.2
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.7e-53 213.8 252 81.0
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.7e-53 213.8 273 76.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.2e-53 213.4 276 72.5
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 3.7e-53 212.6 270 77.8
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.7e-53 212.6 251 80.1
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.9e-53 212.2 273 75.5
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.9e-53 212.2 273 73.6
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 6.4e-53 211.8 268 78.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 6.4e-53 211.8 269 77.0
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 6.4e-53 211.8 273 72.2
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 8.3e-53 211.5 272 76.8
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 8.3e-53 211.5 273 75.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 1.1e-52 211.1 268 77.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.9e-52 210.3 251 81.3
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.9e-52 210.3 245 84.9
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.4e-52 209.9 270 76.7
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.2e-52 209.5 255 78.8
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 4.1e-52 209.1 270 76.7
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 5.4e-52 208.8 251 81.3
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 7.1e-52 208.4 270 75.9
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 9.2e-52 208.0 270 76.7
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 9.2e-52 208.0 270 76.7
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.2e-51 207.6 268 77.2
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.6e-51 207.2 271 75.6
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-51 206.5 268 77.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.5e-51 206.1 273 76.2
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.5e-51 206.1 268 76.9
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.6e-51 205.7 272 79.0
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 7.8e-51 204.9 251 80.1
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 7.8e-51 204.9 271 77.1
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.0e-50 204.5 271 77.1
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.0e-50 204.5 271 77.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.0e-50 204.5 240 83.8
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.3e-50 204.1 269 75.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.7e-50 203.8 269 77.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 3.0e-50 203.0 271 76.4
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 6.6e-50 201.8 271 76.4
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.6e-50 201.4 259 77.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.5e-49 200.7 269 77.3
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.9e-49 200.3 271 76.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-49 199.5 235 86.8
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 5.6e-49 198.7 273 74.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 5.6e-49 198.7 273 69.6
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.6e-48 197.2 251 78.5
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 2.1e-48 196.8 269 74.7
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 3.6e-48 196.1 257 77.4
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 4.7e-48 195.7 271 74.9
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 6.2e-48 195.3 256 79.3
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 6.2e-48 195.3 268 75.4
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.1e-47 194.5 260 75.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 5.2e-47 192.2 252 78.2
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-46 190.7 230 83.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.5e-46 190.7 269 74.7
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 4.4e-46 189.1 251 75.7
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 4.4e-46 189.1 251 75.7
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 2.2e-45 186.8 275 73.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.8e-45 186.0 278 42.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 8.4e-45 184.9 252 75.8
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.1e-44 184.5 262 72.5
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.4e-44 183.3 228 84.6
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 3.2e-44 183.0 264 71.6
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.2e-44 182.6 230 83.9
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.4e-44 182.2 230 81.7
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 9.6e-41 171.4 269 65.4
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.8e-40 169.9 251 70.1
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.1e-36 157.9 251 70.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-36 157.1 271 55.4
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 9.3e-36 154.8 211 82.9
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 2.1e-35 153.7 219 79.5
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-34 149.4 239 74.5
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.6e-33 144.8 95 72.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.1e-32 141.7 99 68.7
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.1e-28 128.6 87 72.4
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.3e-26 124.4 217 77.4
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 3.3e-25 119.8 268 55.6
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 4.3e-25 119.4 87 72.4
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.1e-24 117.1 91 63.7
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 5.3e-23 112.5 85 70.6
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.0e-22 110.5 271 62.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 7.6e-22 108.6 82 62.2
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 7.6e-22 108.6 286 61.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.3e-18 97.1 87 59.8
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 6.1e-11 72.4 56 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.9e-09 67.4 254 56.3
ECA248G2114 Erigeron canadensis HOM05D000094 ORTHO05D001056 4.1e-07 59.7 102 30.4
Cc01_g15830 Coffea canephora HOM05D000094 ORTHO05D001056 6.9e-07 58.9 87 35.6
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 9.0e-07 58.5 98 34.7
Dinv17151 Davidia involucrata HOM05D000094 ORTHO05D001056 2.6e-06 57.0 98 32.7
PGR083G0888 Punica granatum HOM05D000094 ORTHO05D001056 4.5e-06 56.2 83 38.6
Hund02810 Selenicereus undatus HOM05D000094 ORTHO05D001056 5.9e-06 55.8 96 33.3
FAN02G1773 Fragaria x ananassa HOM05D000094 ORTHO05D001056 7.7e-06 55.5 98 34.7
ClCG09G008010 Citrullus lanatus HOM05D000094 ORTHO05D001056 1.0e-05 55.1 75 38.7
ClCG09G012640 Citrullus lanatus HOM05D000094 ORTHO05D001056 1.0e-05 55.1 75 38.7


User provided reference genes

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