Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P146T12 Lonicera japonica HOM05D000245 ORTHO05D000020 1.2e-89 333.2 168 100.0
Lj4P147T8 Lonicera japonica HOM05D000245 ORTHO05D000020 5.6e-76 287.7 170 88.8
Lj4P147T11 Lonicera japonica HOM05D000245 ORTHO05D000020 4.6e-70 268.1 170 84.7
Lj4P146T13 Lonicera japonica HOM05D000245 ORTHO05D000020 8.8e-29 131.0 153 54.9
Lj4P148T17 Lonicera japonica HOM05D000245 ORTHO05D000020 6.3e-27 124.8 147 52.4
CiPaw.01G018600 Carya illinoinensis HOM05D000245 ORTHO05D000020 3.2e-10 69.3 126 44.4
Dinv29982 Davidia involucrata HOM05D000245 ORTHO05D000020 2.0e-09 66.6 161 37.9
QL06p041698 Quercus lobata HOM05D000245 ORTHO05D000020 7.8e-09 64.7 113 41.6
unitig_748.g7484 Utricularia gibba HOM05D000245 ORTHO05D000020 7.8e-09 64.7 50 62.0
RcHm_v2.0_Chr2g0105521 Rosa chinensis HOM05D000245 ORTHO05D000020 1.3e-08 63.9 127 39.4
Actinidia16494 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.3e-08 63.2 67 53.7
FAN19G1205 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.9e-08 62.4 136 39.7
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 3.9e-08 62.4 95 41.1
Medtr4g086160 Medicago truncatula HOM05D000245 ORTHO05D000020 5.0e-08 62.0 72 50.0
Sopen02g035420 Solanum pennellii HOM05D000245 ORTHO05D000020 6.6e-08 61.6 143 35.7
FvH4_1g15960 Fragaria vesca HOM05D000245 ORTHO05D000020 8.6e-08 61.2 136 39.0
Sabra07G0038300 Salix brachista HOM05D000245 ORTHO05D000020 8.6e-08 61.2 140 37.1
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 1.5e-07 60.5 78 48.7
Ah.02g124230 Amaranthus hybridus HOM05D000245 ORTHO05D000020 1.9e-07 60.1 89 42.7
Peaxi162Scf00450g00513 Petunia axillaris HOM05D000245 ORTHO05D000020 1.9e-07 60.1 92 41.3
Glyma.07G212400 Glycine max HOM05D000245 ORTHO05D000020 2.5e-07 59.7 124 37.9
PGSC0003DMG400004538 Solanum tuberosum HOM05D000245 ORTHO05D000020 2.5e-07 59.7 84 41.7
TPR.G25437 Trifolium pratense HOM05D000245 ORTHO05D000020 3.3e-07 59.3 72 48.6
arahy.Tifrunner.gnm1.ann1.2Y0GDL Arachis hypogaea HOM05D000245 ORTHO05D000020 4.3e-07 58.9 88 42.0
Lalb_Chr09g0328321 Lupinus albus HOM05D000245 ORTHO05D000020 4.3e-07 58.9 72 48.6
MD02G1171300 Malus domestica HOM05D000245 ORTHO05D000020 4.3e-07 58.9 62 51.6
Oeu013711.1 Olea europaea HOM05D000245 ORTHO05D000020 4.3e-07 58.9 103 38.8
Psat7g124720 Pisum sativum HOM05D000245 ORTHO05D000020 4.3e-07 58.9 100 44.0
Solyc02g090790.1 Solanum lycopersicum HOM05D000245 ORTHO05D000020 4.3e-07 58.9 141 33.3
CSS0023891 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 5.6e-07 58.5 137 34.3
CiPaw.06G172500 Carya illinoinensis HOM05D000245 ORTHO05D000020 5.6e-07 58.5 92 40.2
Cc04_g00840 Coffea canephora HOM05D000245 ORTHO05D000020 5.6e-07 58.5 82 45.1
Manes.13G125100 Manihot esculenta HOM05D000245 ORTHO05D000020 5.6e-07 58.5 78 43.6
Rhsim05G0084300 Rhododendron simsii HOM05D000245 ORTHO05D000020 5.6e-07 58.5 65 49.2
Rhsim05G0084400 Rhododendron simsii HOM05D000245 ORTHO05D000020 5.6e-07 58.5 65 49.2
Gohir.A12G071200 Gossypium hirsutum HOM05D000245 ORTHO05D000020 7.3e-07 58.2 82 41.5
Potri.007G043400 Populus trichocarpa HOM05D000245 ORTHO05D000020 7.3e-07 58.2 87 47.1
Sopen02g035400 Solanum pennellii HOM05D000245 ORTHO05D000020 7.3e-07 58.2 109 40.4
Nn4g25739 Nelumbo nucifera HOM05D000245 ORTHO05D000020 9.5e-07 57.8 83 44.6
Phvul.009G262200 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 9.5e-07 57.8 78 46.2
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 9.5e-07 57.8 95 42.1
Thecc.01G055100 Theobroma cacao HOM05D000245 ORTHO05D000020 9.5e-07 57.8 67 50.7
CSS0023536 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.2e-06 57.4 137 33.6
CsaV3_3G014920 Cucumis sativus L. HOM05D000245 ORTHO05D000020 1.2e-06 57.4 72 48.6
Gorai.008G075600 Gossypium raimondii HOM05D000245 ORTHO05D000020 1.2e-06 57.4 67 46.3
Hma1.2p1_0494F.1_g165440 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 1.2e-06 57.4 93 43.0
Sopen02g035430 Solanum pennellii HOM05D000245 ORTHO05D000020 1.2e-06 57.4 138 35.5
Atru.chr5.1089 Acer truncatum HOM05D000245 ORTHO05D000020 1.6e-06 57.0 94 39.4
Actinidia25820 Actinidia chinensis HOM05D000245 ORTHO05D000020 1.6e-06 57.0 85 42.4
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 1.6e-06 57.0 130 34.6
Aqoxy7G04162 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 1.6e-06 57.0 91 40.7
AUR62003876 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.6e-06 57.0 91 37.4
ClCG10G011120 Citrullus lanatus HOM05D000245 ORTHO05D000020 1.6e-06 57.0 81 45.7
FvH4_2g06060 Fragaria vesca HOM05D000245 ORTHO05D000020 1.6e-06 57.0 106 37.7
FAN15G0061 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.6e-06 57.0 106 37.7
Lj9C358T5 Lonicera japonica HOM05D000245 ORTHO05D000020 1.6e-06 57.0 67 50.7
Phvul.003G292400 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 1.6e-06 57.0 103 40.8
Sed0023314 Sechium edule HOM05D000245 ORTHO05D000020 1.6e-06 57.0 129 34.9
Sed0025007 Sechium edule HOM05D000245 ORTHO05D000020 1.6e-06 57.0 98 37.8
Thecc.02G100800 Theobroma cacao HOM05D000245 ORTHO05D000020 1.6e-06 57.0 92 41.3
TWI79G1533 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.6e-06 57.0 112 37.5
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 2.1e-06 56.6 140 35.0
EL10Ac6g15751 Beta vulgaris HOM05D000245 ORTHO05D000020 2.1e-06 56.6 86 39.5
Ciclev10027548m.g Citrus clementina HOM05D000245 ORTHO05D000020 2.1e-06 56.6 62 51.6
FAN26G3270 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.1e-06 56.6 106 39.6
Gohir.A02G159000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.1e-06 56.6 92 35.9
Lsat_1_v5_gn_5_136680 Lactuca sativa HOM05D000245 ORTHO05D000020 2.1e-06 56.6 78 46.2
Medtr4g086220 Medicago truncatula HOM05D000245 ORTHO05D000020 2.1e-06 56.6 99 41.4
PSO210G5391 Papaver somniferum HOM05D000233 ORTHO05D000020 2.1e-06 56.6 89 38.2
PGR142G1803 Punica granatum HOM05D000245 ORTHO05D000020 2.1e-06 56.6 139 35.3
Sc16g0004700 Simmondsia chinensis HOM05D000245 ORTHO05D000020 2.1e-06 56.6 65 49.2
Solyc02g090770.1 Solanum lycopersicum HOM05D000245 ORTHO05D000020 2.1e-06 56.6 108 36.1
Aqoxy6G01326 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 2.8e-06 56.2 102 42.2
arahy.Tifrunner.gnm1.ann1.2AHI7R Arachis hypogaea HOM05D000245 ORTHO05D000020 2.8e-06 56.2 69 47.8
arahy.Tifrunner.gnm1.ann1.F2D5GR Arachis hypogaea HOM05D000245 ORTHO05D000020 2.8e-06 56.2 69 47.8
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 2.8e-06 56.2 70 48.6
CSS0005784 Camellia sinensis var. sinensis HOM05D000233 ORTHO05D000020 2.8e-06 56.2 82 45.1
CSS0013312 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.8e-06 56.2 80 42.5
CSS0014363 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.8e-06 56.2 80 42.5
Cfa004015 Carpinus fangiana HOM05D000245 ORTHO05D000020 2.8e-06 56.2 139 39.6
Ciclev10021059m.g Citrus clementina HOM05D000245 ORTHO05D000020 2.8e-06 56.2 75 45.3
DCAR_018316 Daucus carota HOM05D000245 ORTHO05D000020 2.8e-06 56.2 154 34.4
Dinv20391 Davidia involucrata HOM05D000245 ORTHO05D000020 2.8e-06 56.2 78 46.2
FAN15G2684 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.8e-06 56.2 63 49.2
Lsat_1_v5_gn_5_112660 Lactuca sativa HOM05D000245 ORTHO05D000020 2.8e-06 56.2 82 40.2
Lalb_Chr10g0101161 Lupinus albus HOM05D000245 ORTHO05D000020 2.8e-06 56.2 87 43.7
Medtr8g022820 Medicago truncatula HOM05D000245 ORTHO05D000020 2.8e-06 56.2 70 48.6
PSO675G2858 Papaver somniferum HOM05D000245 ORTHO05D000020 2.8e-06 56.2 105 39.0
Sed0016576 Sechium edule HOM05D000245 ORTHO05D000020 2.8e-06 56.2 73 47.9
THA.LOC104810389 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 2.8e-06 56.2 86 47.7
unitig_21.g20744 Utricularia gibba HOM05D000245 ORTHO05D000020 2.8e-06 56.2 77 46.8
VMungo1309G2049 Vigna mungo HOM05D000245 ORTHO05D000020 2.8e-06 56.2 120 37.5
EL10Ac6g15753 Beta vulgaris HOM05D000245 ORTHO05D000020 3.6e-06 55.8 84 41.7
BolC5t33993H Brassica oleracea HOM05D000245 ORTHO05D000020 3.6e-06 55.8 106 37.7
CiPaw.02G132000 Carya illinoinensis HOM05D000245 ORTHO05D000020 3.6e-06 55.8 75 46.7
Haze_10078 Corylus avellana HOM05D000245 ORTHO05D000020 3.6e-06 55.8 91 37.4
Dinv39856 Davidia involucrata HOM05D000245 ORTHO05D000020 3.6e-06 55.8 164 32.9
HanXRQChr16g0503931 Helianthus annuus HOM05D000245 ORTHO05D013871 3.6e-06 55.8 73 39.7
Medtr4g086165 Medicago truncatula HOM05D000245 ORTHO05D000020 3.6e-06 55.8 64 48.4
PSO170G1965 Papaver somniferum HOM05D000245 ORTHO05D000020 3.6e-06 55.8 113 37.2
PGR142G0566 Punica granatum HOM05D000245 ORTHO05D000020 3.6e-06 55.8 92 41.3
RcHm_v2.0_Chr2g0105401 Rosa chinensis HOM05D000245 ORTHO05D000020 3.6e-06 55.8 129 39.5
SGA_v2.0_scaffold2G01381 Striga asiatica HOM05D000245 ORTHO05D000020 3.6e-06 55.8 74 45.9
TWI73G0426 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 3.6e-06 55.8 133 33.8
Aa31LG8G1500 Aethionema arabicum HOM05D000245 ORTHO05D000020 4.7e-06 55.5 90 40.0
MSTRG.20155 Avicennia marina HOM05D000245 ORTHO05D000020 4.7e-06 55.5 119 36.1
MSTRG.3886 Avicennia marina HOM05D000245 ORTHO05D000020 4.7e-06 55.5 83 44.6
BcaC05g29101 Brassica carinata HOM05D000245 ORTHO05D000020 4.7e-06 55.5 89 39.3
C05p53140 Brassica napus HOM05D000245 ORTHO05D000020 4.7e-06 55.5 89 39.3
BraA05t22327Z Brassica rapa HOM05D000245 ORTHO05D000020 4.7e-06 55.5 90 40.0
CSS0047404 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 4.7e-06 55.5 79 41.8
CAN.G390.43 Capsicum annuum HOM05D000245 ORTHO05D000020 4.7e-06 55.5 78 44.9
Cfa004013 Carpinus fangiana HOM05D000245 ORTHO05D000020 4.7e-06 55.5 165 35.8
Cfa005868 Carpinus fangiana HOM05D000245 ORTHO05D000020 4.7e-06 55.5 77 42.9
CDE04G3556 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 4.7e-06 55.5 98 40.8
MELO3C022694.2 Cucumis melo HOM05D000245 ORTHO05D000020 4.7e-06 55.5 70 47.1
DCAR_022654 Daucus carota HOM05D000245 ORTHO05D000020 4.7e-06 55.5 82 41.5
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 4.7e-06 55.5 95 38.9
ECA236G1351 Erigeron canadensis HOM05D000245 ORTHO05D000020 4.7e-06 55.5 72 47.2
Eucgr.I01153 Eucalyptus grandis HOM05D000245 ORTHO05D000020 4.7e-06 55.5 82 42.7
FAN20G0248 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.7e-06 55.5 106 36.8
FAN27G3315 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.7e-06 55.5 106 36.8
Glyma.07G044300 Glycine max HOM05D000245 ORTHO05D000020 4.7e-06 55.5 78 46.2
Gohir.A03G189400 Gossypium hirsutum HOM05D000245 ORTHO05D000020 4.7e-06 55.5 84 39.3
HanXRQChr10g0311971 Helianthus annuus HOM05D000245 ORTHO05D000020 4.7e-06 55.5 78 46.2
Lj3g0018499 Lotus japonicus HOM05D000245 ORTHO05D000020 4.7e-06 55.5 110 37.3
Nn8g38530 Nelumbo nucifera HOM05D000245 ORTHO05D000020 4.7e-06 55.5 74 47.3
Oeu059025.1 Olea europaea HOM05D000245 ORTHO05D000020 4.7e-06 55.5 63 50.8
Peaxi162Scf00001g00352 Petunia axillaris HOM05D000245 ORTHO05D000020 4.7e-06 55.5 73 47.9
QL06p041710 Quercus lobata HOM05D000245 ORTHO05D000020 4.7e-06 55.5 113 36.3
RcHm_v2.0_Chr1g0349631 Rosa chinensis HOM05D000245 ORTHO05D000020 4.7e-06 55.5 129 37.2
Sabra01G0129100 Salix brachista HOM05D000245 ORTHO05D000020 4.7e-06 55.5 98 42.9
Hund05708 Selenicereus undatus HOM05D000245 ORTHO05D000020 4.7e-06 55.5 70 48.6
Sopen10g022610 Solanum pennellii HOM05D000245 ORTHO05D000020 4.7e-06 55.5 85 43.5
TWI14G0568 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 4.7e-06 55.5 74 47.3
VMungo0331G0809 Vigna mungo HOM05D000245 ORTHO05D000020 4.7e-06 55.5 78 46.2
BcaB06g25401 Brassica carinata HOM05D000245 ORTHO05D000020 6.2e-06 55.1 73 42.5
BcaB06g29442 Brassica carinata HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 43.6
A05p35140 Brassica napus HOM05D000245 ORTHO05D000020 6.2e-06 55.1 73 42.5
CANSAT56G3798 Cannabis sativa HOM05D000245 ORTHO05D000020 6.2e-06 55.1 75 46.7
CAN.G790.71 Capsicum annuum HOM05D000245 ORTHO05D000020 6.2e-06 55.1 63 50.8
Ca_18684_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 6.2e-06 55.1 102 37.3
MELO3C006688.2 Cucumis melo HOM05D000245 ORTHO05D000020 6.2e-06 55.1 82 42.7
Dinv10040 Davidia involucrata HOM05D000245 ORTHO05D000020 6.2e-06 55.1 81 45.7
Dinv19668 Davidia involucrata HOM05D000245 ORTHO05D000020 6.2e-06 55.1 81 45.7
Glyma.16G012600 Glycine max HOM05D000245 ORTHO05D000020 6.2e-06 55.1 75 46.7
Lalb_Chr05g0219161 Lupinus albus HOM05D000245 ORTHO05D000020 6.2e-06 55.1 108 38.0
Nitab4.5_0001361g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 6.2e-06 55.1 76 44.7
Nitab4.5_0003987g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 6.2e-06 55.1 63 50.8
Phvul.010G124700 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 6.2e-06 55.1 88 42.0
Potri.001G163700 Populus trichocarpa HOM05D000245 ORTHO05D000020 6.2e-06 55.1 98 42.9
Prupe.8G264900 Prunus persica HOM05D000245 ORTHO05D000020 6.2e-06 55.1 74 45.9
QL12p027792 Quercus lobata HOM05D000245 ORTHO05D000020 6.2e-06 55.1 94 40.4
Rhsim08G0243000 Rhododendron simsii HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 44.9
Rhsim08G0243100 Rhododendron simsii HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 44.9
Rhsim11G0165600 Rhododendron simsii HOM05D000245 ORTHO05D000020 6.2e-06 55.1 118 38.1
SalBow6G4653 Salvia bowleyana HOM05D000245 ORTHO05D000020 6.2e-06 55.1 61 49.2
Sed0016897 Sechium edule HOM05D000245 ORTHO05D000020 6.2e-06 55.1 76 44.7
Sed0026144 Sechium edule HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 41.0
Solyc09g075420.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 46.2
Sopen09g030200 Solanum pennellii HOM05D000245 ORTHO05D000020 6.2e-06 55.1 78 46.2
SGA_v2.0_scaffold90G27657 Striga asiatica HOM05D000245 ORTHO05D000020 6.2e-06 55.1 115 36.5
THA.LOC104802181 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 6.2e-06 55.1 85 42.4
TAR624G1094 Trochodendron aralioides HOM05D000245 ORTHO05D000020 6.2e-06 55.1 74 45.9
Aa31LG5G3030 Aethionema arabicum HOM05D000233 ORTHO05D000020 8.0e-06 54.7 82 39.0
CDE06G1734 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 8.0e-06 54.7 94 41.5
Cc03_g05400 Coffea canephora HOM05D000124 ORTHO05D000056 8.0e-06 54.7 83 43.4
Dinv23620 Davidia involucrata HOM05D000245 ORTHO05D000020 8.0e-06 54.7 127 34.6
Duzib160G0320 Durio zibethinus HOM05D000245 ORTHO05D000020 8.0e-06 54.7 86 44.2
Migut.G00125 Erythranthe guttata HOM05D000245 ORTHO05D000020 8.0e-06 54.7 76 46.1
Gohir.D12G069000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 8.0e-06 54.7 82 41.5
Lalb_Chr05g0219151 Lupinus albus HOM05D000245 ORTHO05D000020 8.0e-06 54.7 129 37.2
Prupe.7G134100 Prunus persica HOM05D000245 ORTHO05D000020 8.0e-06 54.7 143 33.6
RcHm_v2.0_Chr6g0294441 Rosa chinensis HOM05D000245 ORTHO05D000020 8.0e-06 54.7 79 45.6
SGA_v2.0_scaffold68G22842 Striga asiatica HOM05D000245 ORTHO05D000020 8.0e-06 54.7 71 46.5
SGA_v2.0_scaffold71G23912 Striga asiatica HOM05D000245 ORTHO05D000020 8.0e-06 54.7 89 39.3
THA.LOC104814205 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 8.0e-06 54.7 89 39.3
vmacro15137 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 8.0e-06 54.7 80 43.8
VMungo0251G2704 Vigna mungo HOM05D000245 ORTHO05D000020 8.0e-06 54.7 124 37.1


User provided reference genes

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