Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.3e-177 625.5 332 100.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.6e-128 460.7 334 74.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.0e-122 441.4 332 71.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.2e-116 422.9 326 69.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.2e-116 422.9 326 71.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 9.7e-112 407.5 330 64.8
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 8.2e-111 404.4 332 66.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-110 403.7 326 68.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-109 400.2 328 64.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.0e-108 397.5 332 64.2
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.3e-108 397.1 332 65.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.3e-108 397.1 332 65.4
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-108 396.7 330 63.6
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.8e-108 395.6 332 65.1
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.0e-108 395.2 332 65.1
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.0e-108 395.2 330 63.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.4e-107 393.7 330 64.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.4e-107 393.7 331 66.2
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.9e-107 393.3 384 59.1
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.6e-106 390.2 331 63.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.6e-106 390.2 332 65.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.7e-106 389.4 332 65.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.8e-105 386.7 330 66.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 8.7e-105 384.4 332 63.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-104 383.6 324 62.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.8e-103 378.6 332 62.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 6.3e-103 378.3 332 63.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-102 377.5 329 63.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.8e-102 376.7 333 64.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.8e-102 376.7 330 61.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.1e-102 375.6 324 61.7
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.1e-102 375.6 324 61.7
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 5.3e-102 375.2 332 63.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 9.1e-102 374.4 334 62.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.2e-101 374.0 330 60.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.2e-101 374.0 332 61.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.0e-101 373.2 332 62.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.4e-101 372.5 333 63.7
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.9e-99 366.7 332 61.4
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.9e-98 361.3 333 62.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.0e-97 360.9 330 60.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.5e-96 357.1 339 62.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.6e-96 356.3 392 53.3
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 4.8e-95 352.1 332 61.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.8e-94 350.1 331 57.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.9e-94 348.2 327 60.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.4e-93 345.9 333 60.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.4e-93 345.9 339 57.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.2e-92 343.2 333 58.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 2.2e-92 343.2 332 58.1
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 8.5e-92 341.3 332 60.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 8.5e-92 341.3 332 59.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.2e-91 339.3 332 60.5
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.7e-90 336.3 333 58.9
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.7e-90 336.3 333 58.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 4.7e-90 335.5 392 51.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.1e-90 335.1 333 57.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 6.1e-90 335.1 334 54.2
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 8.8e-89 331.3 319 59.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.3e-88 329.3 332 56.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-87 327.0 338 58.0
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.8e-87 326.2 332 55.4
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.8e-87 326.2 334 56.6
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.8e-86 323.6 332 58.1
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.1e-86 322.8 332 55.1
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 7.0e-86 321.6 321 57.6
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 4.5e-85 318.9 332 55.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 7.7e-85 318.2 337 55.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.1e-83 314.3 332 53.3
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.9e-83 313.5 332 54.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.2e-83 312.8 404 48.8
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.0e-82 308.1 330 55.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.0e-81 307.8 332 51.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.5e-80 303.9 340 55.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.5e-80 303.9 333 54.1
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.3e-79 300.8 389 50.1
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 6.3e-79 298.5 332 51.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.2e-79 298.1 331 53.2
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-78 296.6 286 58.0
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.0e-77 293.5 269 62.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.0e-77 293.5 332 50.9
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.5e-77 292.7 290 56.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.0e-76 291.2 332 50.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.0e-76 291.2 333 49.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.0e-76 288.9 310 55.8
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 8.5e-76 288.1 348 51.4
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.7e-74 283.1 327 51.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.8e-71 273.1 331 52.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.7e-71 272.7 333 51.7
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 6.3e-71 271.9 324 50.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.4e-70 270.8 326 47.9
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.8e-70 270.4 371 45.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 4.1e-70 269.2 334 50.6
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-69 266.9 338 48.5
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 6.5e-68 261.9 275 53.8
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-67 260.8 324 53.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.5e-67 260.0 334 50.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.2e-67 259.2 324 47.2
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 9.5e-67 258.1 306 49.7
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.2e-66 257.7 277 51.3
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.0e-65 253.1 318 47.2
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 5.2e-65 252.3 359 44.6
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.6e-64 250.0 329 45.0
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.4e-62 244.2 263 53.2
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.1e-62 243.0 389 43.2
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 3.1e-62 243.0 363 43.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.0e-60 238.0 262 52.3
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.0e-60 238.0 352 42.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.3e-60 237.7 370 41.9
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.9e-60 236.5 334 45.5
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.0e-60 235.7 331 43.8
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 5.6e-59 232.3 332 44.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.6e-58 229.6 296 47.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.7e-58 229.2 305 44.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-57 227.6 333 44.1
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.0e-57 226.1 306 45.8
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.2e-56 224.6 306 44.4
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-56 224.6 334 43.7
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.8e-56 221.5 304 45.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.2e-55 220.3 310 45.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-55 219.9 333 41.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.9e-55 219.9 363 41.0
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-54 216.9 334 42.5
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.4e-54 216.9 334 42.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.7e-53 213.4 294 42.9
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 4.6e-53 212.6 295 44.1
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-51 207.2 335 43.0
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.5e-51 206.8 295 43.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-50 204.5 196 57.7
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.8e-50 203.4 305 42.6
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.7e-50 202.6 307 42.3
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.4e-48 196.4 298 43.0
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.7e-47 194.1 210 50.0
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.3e-47 191.8 279 46.2
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.4e-46 191.0 327 42.5
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.4e-46 191.0 152 65.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.1e-45 187.2 181 56.9
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-45 185.7 146 67.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-44 184.1 177 60.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 7.3e-43 178.7 152 62.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-42 177.9 141 65.2
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.2e-42 175.6 263 45.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.1e-42 175.3 371 35.3
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.3e-39 167.9 328 37.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 4.1e-38 162.9 155 61.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 6.0e-37 159.1 223 45.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.1e-36 156.0 153 55.6
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.6e-36 155.6 153 55.6
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.1e-35 154.8 198 49.5
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.3e-35 152.9 233 45.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.2e-34 151.4 311 36.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 8.9e-33 145.2 232 39.7
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 8.9e-33 145.2 148 49.3
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-31 139.8 377 31.8
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-31 139.8 130 58.5
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-29 134.4 135 60.7
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-29 133.3 194 47.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 8.7e-28 128.6 112 64.3
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-27 128.3 136 58.8
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.9e-27 127.5 291 35.4
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.6e-26 124.4 265 34.7
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.1e-22 111.7 83 66.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 9.3e-22 108.6 212 41.0
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.1e-19 101.7 325 30.8
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.9e-19 100.9 275 34.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 5.6e-19 99.4 156 40.4
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 5.6e-19 99.4 156 40.4
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.4e-17 94.0 218 32.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.1e-17 93.6 84 59.5
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.2e-15 87.4 79 62.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-14 84.0 95 53.7
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 3.5e-13 80.1 218 32.6
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 3.5e-13 80.1 218 32.6
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-11 74.3 203 32.5
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-11 73.9 60 61.7
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 4.8e-10 69.7 229 29.3
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-09 67.8 51 64.7
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 9.0e-09 65.5 103 49.5
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.9e-07 59.7 49 63.3
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.4e-06 58.2 89 40.4


User provided reference genes

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