Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C878T7 Lonicera japonica HOM05D002815 ORTHO05D003409 5.3e-57 224.2 117 100.0
Oeu030686.2 Olea europaea HOM05D002815 ORTHO05D003409 2.6e-35 152.1 93 83.9
Rhsim08G0007600 Rhododendron simsii HOM05D002815 ORTHO05D003409 6.3e-34 147.5 93 81.7
vmacro22670 Vaccinium macrocarpon HOM05D002815 ORTHO05D003409 7.0e-33 144.1 93 82.8
Actinidia12206 Actinidia chinensis HOM05D002815 ORTHO05D003409 9.2e-33 143.7 93 78.5
Actinidia28889 Actinidia chinensis HOM05D002815 ORTHO05D003409 1.2e-32 143.3 93 79.6
vmacro18628 Vaccinium macrocarpon HOM05D002815 ORTHO05D003409 1.6e-32 142.9 93 81.7
TWI53G1894 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 2.0e-32 142.5 93 79.6
Ca_17698_v3 Cicer arietinum L. HOM05D002815 ORTHO05D003409 4.5e-32 141.4 93 80.6
Sc07g0001510 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.3e-31 139.8 93 78.5
CiPaw.04G092700 Carya illinoinensis HOM05D002815 ORTHO05D003409 1.7e-31 139.4 93 79.6
Haze_25031 Corylus avellana HOM05D002815 ORTHO05D003409 1.7e-31 139.4 93 80.6
Oeu028529.1 Olea europaea HOM05D002815 ORTHO05D003409 1.7e-31 139.4 93 80.6
Sed0002780 Sechium edule HOM05D002815 ORTHO05D003409 1.7e-31 139.4 98 76.5
CiPaw.03G135000 Carya illinoinensis HOM05D002815 ORTHO05D003409 6.6e-31 137.5 93 78.5
Lalb_Chr07g0184831 Lupinus albus HOM05D002815 ORTHO05D003409 6.6e-31 137.5 93 80.6
TPR.G2180 Trifolium pratense HOM05D002815 ORTHO05D003409 8.6e-31 137.1 93 76.3
Ah.02g124410 Amaranthus hybridus HOM05D002815 ORTHO05D003409 3.3e-30 135.2 93 76.3
EL10Ac6g14745 Beta vulgaris HOM05D002815 ORTHO05D003409 4.3e-30 134.8 93 74.2
AUR62003313 Chenopodium quinoa HOM05D002815 ORTHO05D003409 1.2e-29 133.3 93 74.2
arahy.Tifrunner.gnm1.ann1.HMT8RT Arachis hypogaea HOM05D002815 ORTHO05D003409 1.6e-29 132.9 97 72.2
Ciclev10025987m.g Citrus clementina HOM05D002815 ORTHO05D003409 2.8e-29 132.1 93 75.3
Hma1.2p1_0375F.1_g138590 Hydrangea macrophylla HOM05D002815 ORTHO05D003409 2.8e-29 132.1 93 74.2
Cpa.g.sc196.4 Carica papaya HOM05D002815 ORTHO05D003409 6.1e-29 131.0 95 72.6
QL06p032363 Quercus lobata HOM05D002815 ORTHO05D003409 6.1e-29 131.0 93 76.3
BcaB01g05552 Brassica carinata HOM05D002815 ORTHO05D003409 1.0e-28 130.2 93 72.0
C03p04810 Brassica napus HOM05D002815 ORTHO05D003409 1.0e-28 130.2 93 72.0
CDE02G3240 Ceratophyllum demersum HOM05D002815 ORTHO05D003409 1.4e-28 129.8 93 68.8
Lj1g0001740 Lotus japonicus HOM05D002815 ORTHO05D003409 1.4e-28 129.8 93 74.2
arahy.Tifrunner.gnm1.ann1.U2FY0G Arachis hypogaea HOM05D002815 ORTHO05D003409 1.8e-28 129.4 93 74.2
A03p04360 Brassica napus HOM05D002815 ORTHO05D003409 2.3e-28 129.0 93 71.0
BraA03t09780Z Brassica rapa HOM05D002815 ORTHO05D003409 2.3e-28 129.0 93 71.0
MBI02_g13021_MAGBIO Magnolia biondii HOM05D002815 ORTHO05D003409 3.0e-28 128.6 93 71.0
Nn5g28923 Nelumbo nucifera HOM05D002815 ORTHO05D003409 5.2e-28 127.9 93 73.1
Cc07_g16040 Coffea canephora HOM05D002815 ORTHO05D003409 1.2e-27 126.7 93 73.1
Sabra07G0068800 Salix brachista HOM05D002815 ORTHO05D003409 1.2e-27 126.7 93 72.0
Glyma.04G220100 Glycine max HOM05D002815 ORTHO05D003409 2.0e-27 125.9 93 74.2
PGR102G0114 Punica granatum HOM05D002815 ORTHO05D003409 2.6e-27 125.6 93 67.7
CsaV3_6G045970 Cucumis sativus L. HOM05D002815 ORTHO05D003409 3.4e-27 125.2 93 73.1
Glyma.20G028200 Glycine max HOM05D002815 ORTHO05D003409 3.4e-27 125.2 93 74.2
QL93p0275_0003 Quercus lobata HOM05D002815 ORTHO05D003409 3.4e-27 125.2 95 73.7
TWI77G0240 Tripterygium wilfordii HOM05D002815 ORTHO05D003409 5.8e-27 124.4 96 71.9
TAR625G0199 Trochodendron aralioides HOM05D002815 ORTHO05D003409 5.8e-27 124.4 93 73.1
Lalb_Chr11g0068021 Lupinus albus HOM05D002815 ORTHO05D003409 7.5e-27 124.0 93 75.3
VMungo0251G0260 Vigna mungo HOM05D002815 ORTHO05D003409 4.9e-26 121.3 93 71.0
unitig_736.g22623 Utricularia gibba HOM05D002815 ORTHO05D003409 6.4e-26 120.9 89 68.5
MD15G1083500 Malus domestica HOM05D002815 ORTHO05D003409 8.3e-26 120.6 93 64.5
Sc03g0004290 Simmondsia chinensis HOM05D002815 ORTHO05D003409 1.1e-25 120.2 93 71.0
Hund03546 Selenicereus undatus HOM05D002815 ORTHO05D003409 5.4e-25 117.9 100 66.0
ClCG01G019280 Citrullus lanatus HOM05D002815 ORTHO05D003409 7.0e-25 117.5 93 68.8
SEGI_12429 Sequoiadendron giganteum HOM05D002815 ORTHO05D003409 9.2e-25 117.1 93 62.4
HPP92_018242 Vanilla planifolia HOM05D002815 ORTHO05D003409 9.2e-25 117.1 93 62.4
ECA232G4479 Erigeron canadensis HOM05D002815 ORTHO05D003409 2.0e-24 115.9 93 66.7
MD15G1334000 Malus domestica HOM05D002815 ORTHO05D003409 2.7e-24 115.5 94 67.0
BcaB05g21510 Brassica carinata HOM05D002815 ORTHO05D003409 3.5e-24 115.2 93 66.7
Prupe.1G436000 Prunus persica HOM05D002815 ORTHO05D003409 4.6e-24 114.8 93 61.3
GSVIVG01022216001 Vitis vinifera HOM05D002815 ORTHO05D003409 4.6e-24 114.8 93 68.8
Glyma.05G183300 Glycine max HOM05D002815 ORTHO05D003409 6.0e-24 114.4 93 68.8
Potri.007G082000 Populus trichocarpa HOM05D002815 ORTHO05D003409 1.0e-23 113.6 93 66.7
Lsat_1_v5_gn_4_140960 Lactuca sativa HOM05D002815 ORTHO05D003409 1.3e-23 113.2 93 66.7
Atru.chr4.374 Acer truncatum HOM05D002815 ORTHO05D003409 1.7e-23 112.8 91 68.1
Thhalv10013514m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 3.0e-23 112.1 93 65.6
Carub.0006s0847 Capsella rubella HOM05D002815 ORTHO05D003409 3.9e-23 111.7 93 63.4
Aqoxy5G01953 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 5.0e-23 111.3 93 61.3
HanXRQChr10g0305391 Helianthus annuus HOM05D002815 ORTHO05D003409 5.0e-23 111.3 93 66.7
AL6G20450 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 1.1e-22 110.2 93 60.2
Cc02_g32850 Coffea canephora HOM05D002815 ORTHO05D003409 1.1e-22 110.2 98 57.1
AUR62016270 Chenopodium quinoa HOM05D002815 ORTHO05D003409 1.9e-22 109.4 93 63.4
Gohir.A12G092900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 2.5e-22 109.0 93 63.4
AT5G10010 Arabidopsis thaliana HOM05D002815 ORTHO05D003409 4.3e-22 108.2 93 61.3
Lalb_Chr12g0203561 Lupinus albus HOM05D002815 ORTHO05D003409 4.3e-22 108.2 93 67.7
Lalb_Chr13g0296181 Lupinus albus HOM05D002815 ORTHO05D003409 4.3e-22 108.2 93 67.7
Lj1g0003133 Lotus japonicus HOM05D002815 ORTHO05D003409 5.6e-22 107.8 90 66.7
CSS0001160 Camellia sinensis var. sinensis HOM05D002815 ORTHO05D003409 8.0e-21 104.0 93 65.6
CSS0027096 Camellia sinensis var. sinensis HOM05D002815 ORTHO05D003409 8.0e-21 104.0 93 65.6
HanXRQChr09g0254771 Helianthus annuus HOM05D002815 ORTHO05D003409 8.0e-21 104.0 93 58.1
arahy.Tifrunner.gnm1.ann1.438YJL Arachis hypogaea HOM05D002815 ORTHO05D003409 1.4e-20 103.2 90 61.1
arahy.Tifrunner.gnm1.ann1.RGT2W8 Arachis hypogaea HOM05D002815 ORTHO05D003409 1.4e-20 103.2 91 61.5
Duzib187G1281 Durio zibethinus HOM05D002815 ORTHO05D003409 1.4e-20 103.2 93 63.4
arahy.Tifrunner.gnm1.ann1.32ZMRL Arachis hypogaea HOM05D002815 ORTHO05D003409 8.9e-20 100.5 103 56.3
ECA246G4254 Erigeron canadensis HOM05D001560 ORTHO05D003613 8.9e-20 100.5 85 65.9
Gohir.D11G056900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 5.8e-19 97.8 93 62.4
Sabra05G0068800 Salix brachista HOM05D002815 ORTHO05D003409 5.8e-19 97.8 93 62.4
SMO367G1178 Selaginella moellendorffii HOM05D002815 ORTHO05D003409 5.8e-19 97.8 100 52.0
Prupe.6G174800 Prunus persica HOM05D002815 ORTHO05D003409 7.5e-19 97.4 93 62.4
Lsat_1_v5_gn_4_141120 Lactuca sativa HOM05D002815 ORTHO05D003409 9.8e-19 97.1 97 59.8
BcaB08g37149 Brassica carinata HOM05D002815 ORTHO05D003409 2.9e-18 95.5 93 58.1
Carub.0008s2574 Capsella rubella HOM05D002815 ORTHO05D003409 2.9e-18 95.5 101 50.5
Dinv42702 Davidia involucrata HOM05D002815 ORTHO05D003409 2.9e-18 95.5 84 64.3
Thhalv10013980m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 3.7e-18 95.1 85 57.6
PSO210G7429 Papaver somniferum HOM05D002815 ORTHO05D003409 6.4e-18 94.4 93 54.8
PSO447G0121 Papaver somniferum HOM05D002815 ORTHO05D003409 6.4e-18 94.4 93 54.8
Zm00001eb425460 Zea mays HOM05D002815 ORTHO05D003409 6.4e-18 94.4 90 52.2
C09p67550 Brassica napus HOM05D002815 ORTHO05D003409 1.1e-17 93.6 93 57.0
BolC9t59516H Brassica oleracea HOM05D002815 ORTHO05D003409 1.1e-17 93.6 93 57.0
Pp3c9_21820 Physcomitrium patens HOM05D002815 ORTHO05D003409 1.9e-17 92.8 99 50.5
Mapoly0126s0032 Marchantia polymorpha HOM05D002815 ORTHO05D003409 2.4e-17 92.4 99 51.5
Sp6g33390 Schrenkiella parvula HOM05D002815 ORTHO05D003409 2.4e-17 92.4 93 57.0
Aqoxy2G03245 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 4.1e-17 91.7 92 52.2
ATR0564G233 Amborella trichopoda HOM05D002815 ORTHO05D003409 5.4e-17 91.3 89 53.9
arahy.Tifrunner.gnm1.ann1.39U6YU Arachis hypogaea HOM05D002815 ORTHO05D003409 5.4e-17 91.3 91 54.9
Thhalv10015997m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 5.4e-17 91.3 84 57.1
Hma1.2p1_0375F.1_g138610 Hydrangea macrophylla HOM05D002815 ORTHO05D025745 7.0e-17 90.9 59 78.0
arahy.Tifrunner.gnm1.ann1.5BMY1P Arachis hypogaea HOM05D002815 ORTHO05D003409 1.6e-16 89.7 78 64.1
CARHR278950 Cardamine hirsuta HOM05D002815 ORTHO05D003409 1.6e-16 89.7 92 53.3
Gorai.007G062100 Gossypium raimondii HOM05D002815 ORTHO05D003409 1.6e-16 89.7 93 59.1
AL8G42410 Arabidopsis lyrata HOM05D002815 ORTHO05D003409 6.0e-16 87.8 104 45.2
BcaC04g19355 Brassica carinata HOM05D002815 ORTHO05D003409 6.0e-16 87.8 93 54.8
A10p27480 Brassica napus HOM05D002815 ORTHO05D003409 6.0e-16 87.8 93 54.8
BraA10t44800Z Brassica rapa HOM05D002815 ORTHO05D003409 6.0e-16 87.8 93 54.8
COL.COLO4_11025 Corchorus olitorius HOM05D002815 ORTHO05D003409 6.0e-16 87.8 93 55.9
Nn1g05194 Nelumbo nucifera HOM05D002815 ORTHO05D003409 1.0e-15 87.0 93 57.0
FvH4_6g03590 Fragaria vesca HOM05D002815 ORTHO05D003409 1.3e-15 86.7 88 52.3
FAN14G2732 Fragaria x ananassa HOM05D002815 ORTHO05D003409 1.3e-15 86.7 88 52.3
Gohir.A11G053400 Gossypium hirsutum HOM05D002815 ORTHO05D003409 1.3e-15 86.7 93 57.0
AT5G64910 Arabidopsis thaliana HOM05D002815 ORTHO05D003409 1.7e-15 86.3 91 51.6
SGA_v2.0_scaffold51G18741 Striga asiatica HOM05D002815 ORTHO05D003409 1.7e-15 86.3 47 91.5
Aqoxy2G03268 Aquilegia oxysepala HOM05D002815 ORTHO05D003409 2.3e-15 85.9 88 52.3
Pp3c15_14660 Physcomitrium patens HOM05D002815 ORTHO05D003409 2.3e-15 85.9 99 46.5
Rhsim05G0107000 Rhododendron simsii HOM05D002815 ORTHO05D003409 2.3e-15 85.9 51 88.2
RcHm_v2.0_Chr3g0452131 Rosa chinensis HOM05D002815 ORTHO05D003409 2.3e-15 85.9 88 50.0
ClCG07G009280 Citrullus lanatus HOM05D002815 ORTHO05D003409 3.0e-15 85.5 48 89.6
Zm00001eb078940 Zea mays HOM05D002815 ORTHO05D003409 3.0e-15 85.5 90 47.8
FvH4_6g03560 Fragaria vesca HOM05D002815 ORTHO05D003409 3.9e-15 85.1 88 52.3
RhsimUnG0215100 Rhododendron simsii HOM05D002815 ORTHO05D003409 3.9e-15 85.1 49 89.8
BcaB05g22209 Brassica carinata HOM05D002815 ORTHO05D003409 5.1e-15 84.7 77 61.0
Dinv19499 Davidia involucrata HOM05D002815 ORTHO05D003409 5.1e-15 84.7 93 57.0
Rhsim10G0013400 Rhododendron simsii HOM05D002815 ORTHO05D003409 5.1e-15 84.7 49 89.8
SalBow5G2996 Salvia bowleyana HOM05D002815 ORTHO05D003409 5.1e-15 84.7 93 55.9
FAN02G0216 Fragaria x ananassa HOM05D002815 ORTHO05D003409 6.6e-15 84.3 88 51.1
FAN09G3609 Fragaria x ananassa HOM05D002815 ORTHO05D003409 6.6e-15 84.3 88 51.1
CsaV3_UNG177370 Cucumis sativus L. HOM05D002815 ORTHO05D003409 8.6e-15 84.0 48 87.5
CBR_g49135 Chara braunii HOM05D002815 ORTHO05D003409 1.1e-14 83.6 93 46.2
Migut.H02424 Erythranthe guttata HOM05D002815 ORTHO05D003409 1.1e-14 83.6 93 55.9
CANSAT01G1961 Cannabis sativa HOM05D002815 ORTHO05D003409 1.9e-14 82.8 93 53.8
FAN05G5430 Fragaria x ananassa HOM05D002815 ORTHO05D003409 1.9e-14 82.8 88 51.1
Phvul.009G140200 Phaseolus vulgaris HOM05D002815 ORTHO05D003409 1.9e-14 82.8 48 85.4
VMungo1309G2726 Vigna mungo HOM05D002815 ORTHO05D003409 2.5e-14 82.4 48 87.5
Potri.005G083700 Populus trichocarpa HOM05D002815 ORTHO05D003409 4.3e-14 81.6 46 89.1
Lj2A562T47 Lonicera japonica HOM05D002815 ORTHO05D003409 7.3e-14 80.9 47 85.1
Phvul.002G264400 Phaseolus vulgaris HOM05D002815 ORTHO05D003409 7.3e-14 80.9 46 84.8
BcaB05g21509 Brassica carinata HOM05D002815 ORTHO05D003409 9.5e-14 80.5 93 52.7
BcaB05g21515 Brassica carinata HOM05D002815 ORTHO05D003409 9.5e-14 80.5 93 52.7
A02p00280 Brassica napus HOM05D002815 ORTHO05D003409 9.5e-14 80.5 93 51.6
BraA02t05013Z Brassica rapa HOM05D002815 ORTHO05D003409 9.5e-14 80.5 93 51.6
RcHm_v2.0_Chr3g0459621 Rosa chinensis HOM05D002815 ORTHO05D003409 9.5e-14 80.5 86 51.2
Sed0017782 Sechium edule HOM05D002815 ORTHO05D003409 9.5e-14 80.5 93 54.8
C02p04200 Brassica napus HOM05D002815 ORTHO05D003409 1.2e-13 80.1 93 51.6
SEGI_12052 Sequoiadendron giganteum HOM05D002815 ORTHO05D003409 1.2e-13 80.1 80 53.8
Manes.12G141500 Manihot esculenta HOM05D002815 ORTHO05D003409 1.6e-13 79.7 47 85.1
PSO204G0001 Papaver somniferum HOM05D002815 ORTHO05D003409 1.6e-13 79.7 93 47.3
FAN05G3325 Fragaria x ananassa HOM05D002815 ORTHO05D003409 2.1e-13 79.3 88 50.0
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 2.1e-13 79.3 74 60.8
Glyma.08G141100 Glycine max HOM05D002815 ORTHO05D003409 2.8e-13 79.0 46 87.0
BcaB05g22141 Brassica carinata HOM05D002815 ORTHO05D003409 4.7e-13 78.2 85 51.8
Sed0026641 Sechium edule HOM05D002815 ORTHO05D025745 4.7e-13 78.2 109 49.5
MSTRG.3807 Avicennia marina HOM05D002815 ORTHO05D003409 1.8e-12 76.3 47 83.0
BcaC03g13288 Brassica carinata HOM05D002815 ORTHO05D003409 3.1e-12 75.5 97 50.5
FAN14G3004 Fragaria x ananassa HOM05D002815 ORTHO05D003409 5.2e-12 74.7 90 45.6
Lj4g0018156 Lotus japonicus HOM05D002815 ORTHO05D003409 2.0e-11 72.8 46 78.3
FvH4_6g09260 Fragaria vesca HOM05D002815 ORTHO05D003409 2.6e-11 72.4 90 44.4
BcaC03g14308 Brassica carinata HOM05D002815 ORTHO05D003409 3.4e-11 72.0 71 53.5
BolC2t07796H Brassica oleracea HOM05D002815 ORTHO05D003409 3.4e-11 72.0 71 53.5
Aa31LG3G17120 Aethionema arabicum HOM05D002815 ORTHO05D003409 9.9e-11 70.5 93 48.4
BcaB02g09841 Brassica carinata HOM05D002815 ORTHO05D003409 2.9e-10 68.9 100 41.0
Nitab4.5_0002843g0040 Nicotiana tabacum HOM05D002815 ORTHO05D003409 6.4e-10 67.8 48 70.8
Os04g0661300 Oryza sativa ssp. japonica HOM05D002815 ORTHO05D003409 1.1e-09 67.0 95 38.9
Nitab4.5_0000156g0140 Nicotiana tabacum HOM05D002815 ORTHO05D003409 1.4e-09 66.6 48 70.8
C02p16970 Brassica napus HOM05D002815 ORTHO05D003409 1.9e-09 66.2 85 45.9
Nitab4.5_0001215g0030 Nicotiana tabacum HOM05D002815 ORTHO05D003409 1.9e-09 66.2 94 46.8
Peaxi162Scf01006g00312 Petunia axillaris HOM05D002815 ORTHO05D003409 2.4e-09 65.9 47 70.2
CARHR203300 Cardamine hirsuta HOM05D002815 ORTHO05D003409 2.1e-08 62.8 48 68.8
FAN09G0402 Fragaria x ananassa HOM05D001484 ORTHO05D001564 2.1e-08 62.8 79 45.6
MBI14_g36017_MAGBIO Magnolia biondii HOM05D002815 ORTHO05D025745 4.6e-08 61.6 50 60.0
Eucgr.H04829 Eucalyptus grandis HOM05D002815 ORTHO05D003409 6.0e-08 61.2 46 67.4
TPR.G7302 Trifolium pratense HOM05D002815 ORTHO05D003409 6.0e-08 61.2 34 88.2
BcaC03g13287 Brassica carinata HOM05D002815 ORTHO05D003409 1.3e-07 60.1 58 58.6
FAN14G5346 Fragaria x ananassa HOM05D002815 ORTHO05D002827 1.7e-07 59.7 50 62.0
FAN14G1032 Fragaria x ananassa HOM05D002815 ORTHO05D003409 5.1e-07 58.2 46 63.0
Thhalv10004094m.g Eutrema salsugineum HOM05D002815 ORTHO05D003409 2.5e-06 55.8 90 38.9
Gohir.D12G093900 Gossypium hirsutum HOM05D002815 ORTHO05D003409 3.3e-06 55.5 93 41.9
BcaB05g21513 Brassica carinata HOM05D002815 ORTHO05D003409 9.5e-06 53.9 66 51.5


User provided reference genes

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