Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 6181.3 3107 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4554.2 3280 72.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 4363.9 3280 70.2
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 4092.3 3366 64.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4062.7 3220 66.7
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4059.2 3286 66.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 4034.2 3219 66.4
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3998.0 3277 65.0
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3998.0 3276 64.9
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3977.2 3247 64.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3962.9 3254 64.4
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3890.1 3249 63.2
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3878.9 3250 63.2
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3870.1 3258 63.3
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3867.8 3298 62.4
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3867.4 3257 62.8
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3867.4 3259 62.7
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3865.8 3259 62.8
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3864.7 3259 62.9
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3861.2 3212 63.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3858.1 3265 62.6
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3848.5 3260 62.6
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3837.3 3259 62.5
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3825.4 3260 62.2
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3808.8 3264 62.3
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3794.6 3291 62.3
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3791.9 3155 63.7
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3765.7 3298 61.8
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3726.8 3235 61.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3715.2 3261 61.5
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3698.3 3051 64.1
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3697.1 3248 60.8
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3660.9 3244 60.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3658.2 3258 60.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3639.0 3243 60.2
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3639.0 3255 59.8
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3638.6 3234 61.0
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3627.4 3257 60.5
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3626.3 3243 60.1
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3614.7 3250 60.3
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3609.3 3140 62.5
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3603.9 3249 60.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3587.3 3243 59.9
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3586.6 3219 60.1
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3572.3 3277 59.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3548.8 3242 59.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3548.4 3278 59.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3535.7 3278 58.8
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3521.5 3248 58.8
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3510.3 3264 57.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3498.4 2894 63.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3471.0 3267 57.3
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3456.8 3247 58.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3420.6 3267 56.6
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3419.8 3263 56.9
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3412.5 3234 57.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3405.5 3231 57.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3399.4 3233 57.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3397.8 3200 57.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3397.4 3200 57.0
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3394.7 3235 57.4
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3394.7 3235 57.0
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3391.3 3202 57.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3380.9 3202 56.9
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3367.0 2682 65.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3358.9 2432 70.6
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3353.1 3235 56.8
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3335.8 3258 55.9
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3323.1 3245 56.2
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3322.7 3229 56.3
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3317.3 3302 55.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3300.0 3010 59.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3166.7 3031 57.3
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3127.8 2964 57.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3018.0 3129 54.0
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2988.4 3242 52.7
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2888.2 2032 74.0
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2699.1 3213 48.1
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2542.3 2460 55.8
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2456.0 1597 79.8
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2426.0 2578 53.3
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2252.2 1798 68.1
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2249.6 1695 69.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2206.0 2002 59.4
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2151.7 2407 50.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2137.8 1508 74.2
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2134.0 3178 41.9
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2096.2 2427 48.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2094.3 1444 76.1
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2077.4 1468 73.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2072.0 2763 44.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1923.7 2738 43.2
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1905.6 2744 42.8
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1816.6 2965 38.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1665.2 1711 52.5
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1588.2 1006 81.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1499.6 2167 42.5
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1449.5 1253 60.7
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1335.5 979 70.9
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1290.0 1515 48.7
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1288.5 1557 49.3
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1260.7 1018 65.8
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1183.7 845 72.3
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1117.8 837 70.3
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1098.2 1133 56.8
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1097.4 1492 44.5
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1080.1 973 60.2
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.2e-303 1047.3 852 63.8
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 8.0e-301 1038.9 1263 47.3
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.3e-300 1037.3 3363 28.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.1e-286 991.9 1491 40.7
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.2e-277 961.8 748 66.3
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.2e-276 956.4 893 57.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.2e-210 738.4 411 91.0
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.4e-206 724.2 441 82.5
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-190 672.5 762 49.0
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 9.5e-177 626.7 802 44.3
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 2.3e-175 622.1 768 47.4
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 2.0e-166 592.4 813 43.1
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.3e-161 575.1 443 64.1
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 4.3e-153 548.1 779 40.9
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 8.1e-152 543.9 795 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.2e-147 530.0 669 45.7
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.9e-145 522.7 903 37.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 6.9e-135 487.6 441 59.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.8e-133 481.9 327 74.0
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 6.4e-125 454.5 411 60.1
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 2.4e-124 452.6 270 83.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.1e-124 451.1 250 88.8
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 7.6e-118 431.0 536 49.3
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 8.4e-117 427.6 785 36.6
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.6e-115 423.3 573 47.5
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.5e-115 422.2 563 43.5
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.3e-104 387.1 673 38.3
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.8e-103 383.3 301 66.8
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-100 373.2 341 61.6
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-97 364.0 217 85.3
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 7.7e-94 351.3 453 42.6
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 9.4e-92 344.4 244 68.4
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 8.8e-90 337.8 800 31.1
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.6e-89 336.3 247 68.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.2e-88 331.3 309 58.3
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 8.5e-85 321.2 354 52.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 6.8e-74 285.0 317 52.4
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-70 273.5 304 51.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 4.4e-65 255.8 155 79.4
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.1e-63 249.2 622 30.2
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.0e-62 246.9 958 25.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 5.4e-55 222.2 328 41.2
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.8e-51 209.9 390 35.1
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 3.7e-48 199.5 195 53.8
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.6e-43 184.1 503 29.6
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.6e-35 157.5 118 67.8
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 9.9e-33 148.3 82 87.8
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 8.4e-32 145.2 113 58.4
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 6.2e-27 129.0 113 61.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 1.1e-26 128.3 97 68.0
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 6.9e-26 125.6 86 73.3
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 5.8e-25 122.5 108 63.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.9e-24 120.2 133 54.9
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 4.2e-23 116.3 70 81.4
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.2e-22 114.8 93 54.8
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 3.5e-22 113.2 105 61.9
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 3.3e-20 106.7 109 54.1
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 4.5e-17 96.3 119 47.1
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.7e-14 87.0 156 34.6
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-13 82.4 58 74.1
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.6e-11 77.8 63 61.9
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 1.1e-10 75.1 78 52.6
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.1e-10 75.1 59 62.7
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 7.6e-09 68.9 106 39.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 7.6e-09 68.9 45 73.3
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 9.9e-09 68.6 57 57.9


User provided reference genes

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