Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C833T1 Lonicera japonica HOM05D003158 ORTHO05D003560 2.4e-69 265.4 132 100.0
MSTRG.17640 Avicennia marina HOM05D003158 ORTHO05D003560 1.5e-36 156.4 119 64.7
COL.COLO4_06622 Corchorus olitorius HOM05D003158 ORTHO05D003560 2.5e-34 149.1 123 65.0
Nitab4.5_0002026g0130 Nicotiana tabacum HOM05D003158 ORTHO05D003560 2.5e-34 149.1 118 61.9
Dinv22196 Davidia involucrata HOM05D003158 ORTHO05D003560 5.5e-34 147.9 122 62.3
Dinv36135 Davidia involucrata HOM05D003158 ORTHO05D003560 2.1e-33 146.0 118 63.6
SalBow6G6419 Salvia bowleyana HOM05D003158 ORTHO05D003560 2.1e-33 146.0 122 62.3
Cfa009916 Carpinus fangiana HOM05D003158 ORTHO05D003560 2.7e-33 145.6 122 59.0
Solyc11g062350.2 Solanum lycopersicum HOM05D003158 ORTHO05D003560 2.7e-33 145.6 118 61.9
Sopen11g024320 Solanum pennellii HOM05D003158 ORTHO05D003560 2.7e-33 145.6 118 61.9
Haze_23273 Corylus avellana HOM05D003158 ORTHO05D003560 3.6e-33 145.2 116 60.3
Medtr5g088990 Medicago truncatula HOM05D003158 ORTHO05D003560 3.6e-33 145.2 129 63.6
Nitab4.5_0000492g0180 Nicotiana tabacum HOM05D003158 ORTHO05D003560 4.6e-33 144.8 116 62.1
Oeu061693.2 Olea europaea HOM05D003158 ORTHO05D003560 6.1e-33 144.4 123 62.6
Rhsim13G0204900 Rhododendron simsii HOM05D003158 ORTHO05D003560 7.9e-33 144.1 122 60.7
QL01p016398 Quercus lobata HOM05D003158 ORTHO05D003560 1.0e-32 143.7 117 59.0
Duzib150G0466 Durio zibethinus HOM05D003158 ORTHO05D003560 2.3e-32 142.5 122 59.8
CiPaw.14G110400 Carya illinoinensis HOM05D003158 ORTHO05D003560 3.9e-32 141.7 120 60.0
Peaxi162Scf00029g02515 Petunia axillaris HOM05D003158 ORTHO05D003560 3.9e-32 141.7 121 58.7
PGSC0003DMG400032506 Solanum tuberosum HOM05D003158 ORTHO05D003560 8.7e-32 140.6 118 59.3
CAN.G331.7 Capsicum annuum HOM05D003158 ORTHO05D003560 1.5e-31 139.8 108 64.8
Glyma.14G036900 Glycine max HOM05D003158 ORTHO05D003560 1.5e-31 139.8 91 70.3
Ca_06187_v3 Cicer arietinum L. HOM05D003158 ORTHO05D003560 5.7e-31 137.9 124 59.7
LjContig00564g0021632 Lotus japonicus HOM05D003158 ORTHO05D003560 7.4e-31 137.5 132 55.3
Cc01_g06530 Coffea canephora HOM05D003158 ORTHO05D003560 1.3e-30 136.7 120 58.3
TPR.G16406 Trifolium pratense HOM05D003158 ORTHO05D003560 1.7e-30 136.3 129 59.7
DCAR_031626 Daucus carota HOM05D003158 ORTHO05D003560 2.2e-30 136.0 127 55.1
Thecc.09G254200 Theobroma cacao HOM05D003158 ORTHO05D003560 2.2e-30 136.0 123 56.9
Gorai.009G076500 Gossypium raimondii HOM05D003158 ORTHO05D003560 8.2e-30 134.0 122 59.8
Gohir.D05G075200 Gossypium hirsutum HOM05D003158 ORTHO05D003560 1.4e-29 133.3 122 59.8
Phvul.008G203314 Phaseolus vulgaris HOM05D003158 ORTHO05D003560 1.4e-29 133.3 121 57.9
Psat0s2305g0040 Pisum sativum HOM05D003158 ORTHO05D003560 1.4e-29 133.3 124 57.3
Glyma.02G277700 Glycine max HOM05D003158 ORTHO05D003560 3.1e-29 132.1 83 72.3
Atru.chr3.2852 Acer truncatum HOM05D003158 ORTHO05D003560 1.2e-28 130.2 124 57.3
Migut.D00682 Erythranthe guttata HOM05D003158 ORTHO05D003560 2.6e-28 129.0 121 57.0
Lalb_Chr04g0249311 Lupinus albus HOM05D003158 ORTHO05D003560 2.6e-28 129.0 130 52.3
Gohir.A05G072400 Gossypium hirsutum HOM05D003158 ORTHO05D003560 3.4e-28 128.6 122 57.4
VMungo0647G1275 Vigna mungo HOM05D003158 ORTHO05D003560 3.4e-28 128.6 122 54.9
TAR633G2256 Trochodendron aralioides HOM05D003158 ORTHO05D003560 7.7e-28 127.5 121 53.7
Lalb_Chr10g0106111 Lupinus albus HOM05D003158 ORTHO05D003560 1.0e-27 127.1 118 57.6
TAR623G1391 Trochodendron aralioides HOM05D003158 ORTHO05D003560 1.0e-27 127.1 121 52.1
CSS0021136 Camellia sinensis var. sinensis HOM05D003158 ORTHO05D003560 2.2e-27 125.9 115 60.0
arahy.Tifrunner.gnm1.ann1.FW4L9V Arachis hypogaea HOM05D003158 ORTHO05D003560 5.0e-27 124.8 92 60.9
Prupe.4G270100 Prunus persica HOM05D003158 ORTHO05D003560 6.5e-27 124.4 103 60.2
Manes.02G136300 Manihot esculenta HOM05D003158 ORTHO05D003560 8.5e-27 124.0 119 52.9
Cpa.g.c32589 Carica papaya HOM05D003158 ORTHO05D003560 1.1e-26 123.6 124 52.4
PGR102G0878 Punica granatum HOM05D003158 ORTHO05D003560 1.1e-26 123.6 101 59.4
GSVIVG01037359001 Vitis vinifera HOM05D003158 ORTHO05D003560 1.4e-26 123.2 124 54.0
arahy.Tifrunner.gnm1.ann1.Z71ZTI Arachis hypogaea HOM05D003158 ORTHO05D003560 1.9e-26 122.9 133 46.6
CsaV3_6G038780 Cucumis sativus L. HOM05D003158 ORTHO05D003560 2.5e-26 122.5 104 59.6
TWI79G0487 Tripterygium wilfordii HOM05D003158 ORTHO05D003560 5.5e-26 121.3 121 48.8
RcHm_v2.0_Chr7g0211321 Rosa chinensis HOM05D003158 ORTHO05D003560 7.2e-26 120.9 101 63.4
Lsat_1_v5_gn_2_31121 Lactuca sativa HOM05D003158 ORTHO05D003560 9.4e-26 120.6 116 57.8
ClCG02G022660 Citrullus lanatus HOM05D003158 ORTHO05D003560 1.2e-25 120.2 124 56.5
Eucgr.B03755 Eucalyptus grandis HOM05D003158 ORTHO05D003560 1.2e-25 120.2 115 57.4
Hma1.2p1_0460F.1_g157670 Hydrangea macrophylla HOM05D003158 ORTHO05D003560 1.6e-25 119.8 94 64.9
Nn2g14745 Nelumbo nucifera HOM05D003158 ORTHO05D003560 2.7e-25 119.0 93 62.4
SGA_v2.0_scaffold29G12207 Striga asiatica HOM05D003158 ORTHO05D003560 2.7e-25 119.0 126 54.8
Sc09g0001140 Simmondsia chinensis HOM05D003158 ORTHO05D003560 4.7e-25 118.2 89 64.0
Nn7g36905 Nelumbo nucifera HOM05D003158 ORTHO05D003560 1.0e-24 117.1 120 49.2
Ciclev10016454m.g Citrus clementina HOM05D003158 ORTHO05D003560 6.7e-24 114.4 125 49.6
ECA238G4331 Erigeron canadensis HOM05D003158 ORTHO05D003560 8.8e-24 114.0 86 67.4
RcHm_v2.0_Chr5g0044801 Rosa chinensis HOM05D003158 ORTHO05D003560 1.5e-23 113.2 102 58.8
Aqoxy2G00508 Aquilegia oxysepala HOM05D003158 ORTHO05D003560 2.6e-23 112.5 128 50.0
Aa31sc332G10 Aethionema arabicum HOM05D003158 ORTHO05D003560 3.3e-23 112.1 89 60.7
EL10Ac4g10084 Beta vulgaris HOM05D003158 ORTHO05D003560 3.3e-23 112.1 99 54.5
CANSAT54G2684 Cannabis sativa HOM05D003158 ORTHO05D003560 3.3e-23 112.1 109 56.0
Ah.06g194810 Amaranthus hybridus HOM05D003158 ORTHO05D003560 7.4e-23 110.9 89 59.6
Potri.009G067300 Populus trichocarpa HOM05D003158 ORTHO05D003560 7.4e-23 110.9 123 49.6
Sabra09G0050200 Salix brachista HOM05D003158 ORTHO05D003560 7.4e-23 110.9 117 52.1
HanXRQChr14g0432891 Helianthus annuus HOM05D003158 ORTHO05D003560 1.3e-22 110.2 86 65.1
AUR62006567 Chenopodium quinoa HOM05D003158 ORTHO05D003560 3.7e-22 108.6 100 52.0
Thhalv10008399m.g Eutrema salsugineum HOM05D003158 ORTHO05D003560 6.3e-22 107.8 92 58.7
Potri.001G273000 Populus trichocarpa HOM05D003158 ORTHO05D003560 8.2e-22 107.5 123 49.6
AL1G18930 Arabidopsis lyrata HOM05D003158 ORTHO05D003560 1.1e-21 107.1 122 48.4
FvH4_5g22740 Fragaria vesca HOM05D003158 ORTHO05D003560 1.1e-21 107.1 102 56.9
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 1.1e-21 107.1 102 56.9
FAN18G4290 Fragaria x ananassa HOM05D003158 ORTHO05D003560 1.1e-21 107.1 102 56.9
BcaC07g41942 Brassica carinata HOM05D003158 ORTHO05D003560 1.4e-21 106.7 121 47.1
A08p35110 Brassica napus HOM05D003158 ORTHO05D003560 1.8e-21 106.3 124 50.0
BraA08t35420Z Brassica rapa HOM05D003158 ORTHO05D003560 1.8e-21 106.3 124 50.0
BolC8t52525H Brassica oleracea HOM05D003158 ORTHO05D003560 3.1e-21 105.5 92 54.3
BcaC07g41941 Brassica carinata HOM05D003158 ORTHO05D003560 4.1e-21 105.1 121 46.3
C08p49970 Brassica napus HOM05D003158 ORTHO05D003560 4.1e-21 105.1 121 46.3
AT1G08500 Arabidopsis thaliana HOM05D003158 ORTHO05D003560 6.9e-21 104.4 114 50.9
Carub.0001s0786 Capsella rubella HOM05D003158 ORTHO05D003560 6.9e-21 104.4 92 58.7
FAN13G1331 Fragaria x ananassa HOM05D003158 ORTHO05D003560 9.1e-21 104.0 102 54.9
FAN13G1881 Fragaria x ananassa HOM05D003158 ORTHO05D003560 9.1e-21 104.0 102 54.9
ATR0307G078 Amborella trichopoda HOM05D003158 ORTHO05D003560 1.2e-20 103.6 104 51.9
BolC8t48833H Brassica oleracea HOM05D003158 ORTHO05D003560 1.2e-20 103.6 121 45.5
unitig_578.g16662 Utricularia gibba HOM05D003158 ORTHO05D003560 2.0e-20 102.8 128 47.7
MBI13_g09207_MAGBIO Magnolia biondii HOM05D003158 ORTHO05D003560 2.6e-20 102.4 115 48.7
MD03G1156900 Malus domestica HOM05D003158 ORTHO05D003560 3.4e-20 102.1 125 45.6
Sabra16G0168200 Salix brachista HOM05D003158 ORTHO05D003560 4.5e-20 101.7 123 48.8
A09p65870 Brassica napus HOM05D003158 ORTHO05D003560 5.9e-20 101.3 121 47.1
FAN08G2045 Fragaria x ananassa HOM05D003158 ORTHO05D003560 5.9e-20 101.3 100 55.0
BcaC07g38397 Brassica carinata HOM05D003158 ORTHO05D003560 7.7e-20 100.9 121 47.9
C08p11540 Brassica napus HOM05D003158 ORTHO05D003560 7.7e-20 100.9 121 47.9
Sed0025886 Sechium edule HOM05D003158 ORTHO05D003560 7.7e-20 100.9 92 58.7
BcaB03g13328 Brassica carinata HOM05D003158 ORTHO05D003560 1.0e-19 100.5 122 45.9
CARHR008390 Cardamine hirsuta HOM05D003158 ORTHO05D003560 1.0e-19 100.5 92 53.3
Sp1g07160 Schrenkiella parvula HOM05D003158 ORTHO05D003560 1.0e-19 100.5 91 56.0
MD11G1183800 Malus domestica HOM05D003158 ORTHO05D003560 1.7e-19 99.8 130 46.2
FAN04G2163 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.9e-19 99.0 100 55.0
MELO3C014540.2 Cucumis melo HOM05D003158 ORTHO05D003560 5.0e-19 98.2 102 52.0
Hund07418 Selenicereus undatus HOM05D003158 ORTHO05D003560 2.5e-18 95.9 120 48.3
THA.LOC104800462 Tarenaya hassleriana HOM05D003158 ORTHO05D003560 3.2e-18 95.5 125 50.4
vmacro04084 Vaccinium macrocarpon HOM05D003158 ORTHO05D003560 5.5e-18 94.7 116 46.6
PSO339G6483 Papaver somniferum HOM05D003158 ORTHO05D003560 6.7e-16 87.8 106 47.2
HPP92_003586 Vanilla planifolia HOM05D003158 ORTHO05D003560 2.0e-15 86.3 95 52.6
Actinidia06988 Actinidia chinensis HOM05D003158 ORTHO05D003560 5.7e-15 84.7 63 63.5
Zm00001eb129330 Zea mays HOM05D003158 ORTHO05D003560 2.6e-12 75.9 83 48.2
Os01g0281600 Oryza sativa ssp. japonica HOM05D003158 ORTHO05D003560 3.5e-12 75.5 79 53.2
SEGI_22430 Sequoiadendron giganteum HOM05D003158 ORTHO05D003560 3.2e-10 68.9 75 50.7
MBI13_g46382_MAGBIO Magnolia biondii HOM05D003158 ORTHO05D003560 1.2e-09 67.0 81 46.9
HanXRQChr16g0523401 Helianthus annuus HOM05D003158 ORTHO05D003560 2.3e-08 62.8 69 50.7
Rhsim01G0161200 Rhododendron simsii HOM05D003158 ORTHO05D003560 2.6e-07 59.3 62 46.8
Lsat_1_v5_gn_4_37561 Lactuca sativa HOM05D003158 ORTHO05D003560 4.4e-07 58.5 103 36.9
Os12g0454600 Oryza sativa ssp. japonica HOM05D003158 ORTHO05D003560 9.7e-07 57.4 51 49.0
PSO478G2600 Papaver somniferum HOM05D003158 ORTHO05D003560 9.7e-07 57.4 48 56.2
AUR62004253 Chenopodium quinoa HOM05D003158 ORTHO05D003560 1.7e-06 56.6 49 55.1
DCAR_006883 Daucus carota HOM05D003158 ORTHO05D003560 1.7e-06 56.6 68 41.2
Duzib268G0200 Durio zibethinus HOM05D003158 ORTHO05D003560 1.7e-06 56.6 46 52.2
Eucgr.D02434 Eucalyptus grandis HOM05D003158 ORTHO05D003560 2.2e-06 56.2 46 56.5
Oeu026237.1 Olea europaea HOM05D003158 ORTHO05D003560 2.2e-06 56.2 72 44.4
FAN10G2980 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.8e-06 55.8 46 52.2
FAN10G4201 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.8e-06 55.8 46 52.2
Potri.014G072700 Populus trichocarpa HOM05D003158 ORTHO05D003560 2.8e-06 55.8 96 38.5
Hund27341 Selenicereus undatus HOM05D003158 ORTHO05D003560 2.8e-06 55.8 49 55.1
Hma1.2p1_0532F.1_g173415 Hydrangea macrophylla HOM05D003158 ORTHO05D003560 3.7e-06 55.5 61 47.5
Lj7C525T12 Lonicera japonica HOM05D003158 ORTHO05D003560 4.8e-06 55.1 73 39.7
MD02G1199000 Malus domestica HOM05D003158 ORTHO05D003560 4.8e-06 55.1 46 56.5
PGR031G1765 Punica granatum HOM05D003158 ORTHO05D003560 4.8e-06 55.1 100 36.0
AUR62042743 Chenopodium quinoa HOM05D003158 ORTHO05D003560 6.3e-06 54.7 46 56.5
SEGI_27110 Sequoiadendron giganteum HOM05D003158 ORTHO05D003560 6.3e-06 54.7 73 43.8
EL10Ac1g00920 Beta vulgaris HOM05D003158 ORTHO05D003560 8.2e-06 54.3 49 49.0
ClCG06G000290 Citrullus lanatus HOM05D003158 ORTHO05D003560 8.2e-06 54.3 74 40.5
FvH4_7g12470 Fragaria vesca HOM05D003158 ORTHO05D003560 8.2e-06 54.3 46 50.0
FAN06G3727 Fragaria x ananassa HOM05D003158 ORTHO05D003560 8.2e-06 54.3 46 50.0
FAN06G4544 Fragaria x ananassa HOM05D003158 ORTHO05D003560 8.2e-06 54.3 46 50.0
PSO782G3191 Papaver somniferum HOM05D003158 ORTHO05D003560 8.2e-06 54.3 48 54.2


User provided reference genes

Program Settings