Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 3.4e-67 258.1 121 100.0
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.3e-53 213.0 112 84.8
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.7e-53 212.6 113 86.7
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 8.2e-53 210.3 113 85.8
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.4e-52 208.8 113 84.1
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 3.1e-52 208.4 111 86.5
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 4.1e-52 208.0 113 85.0
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.1e-52 208.0 113 82.3
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 4.1e-52 208.0 113 84.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.3e-52 207.6 109 87.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 7.0e-52 207.2 113 85.0
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 7.0e-52 207.2 113 85.0
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 9.1e-52 206.8 113 83.2
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 9.1e-52 206.8 109 86.2
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.6e-51 206.1 113 83.2
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.6e-51 206.1 113 83.2
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.6e-51 206.1 113 83.2
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.6e-51 206.1 113 85.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.0e-51 205.7 113 84.1
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.0e-51 205.7 113 83.2
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.0e-51 205.7 113 82.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.0e-51 205.7 113 85.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.0e-51 205.7 113 84.1
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.7e-51 205.3 113 81.4
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.7e-51 205.3 113 84.1
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.7e-51 205.3 113 82.3
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 3.5e-51 204.9 113 84.1
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-51 204.1 113 81.4
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 7.7e-51 203.8 113 83.2
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 7.7e-51 203.8 113 80.5
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.7e-51 203.8 115 82.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.0e-50 203.4 109 86.2
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-50 203.4 113 80.5
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.3e-50 203.0 113 81.4
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-50 203.0 110 81.8
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.3e-50 203.0 113 81.4
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.3e-50 203.0 113 81.4
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.3e-50 203.0 113 81.4
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 1.7e-50 202.6 113 81.4
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.7e-50 202.6 113 82.3
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.2e-50 202.2 114 82.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.2e-50 202.2 113 81.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.9e-50 201.8 114 82.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.9e-50 201.8 114 83.3
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 2.9e-50 201.8 113 83.2
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.9e-50 201.8 113 82.3
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.9e-50 201.8 113 80.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.9e-50 201.8 113 83.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 3.8e-50 201.4 114 83.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.8e-50 201.4 113 81.4
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.5e-50 200.7 114 81.6
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 6.5e-50 200.7 114 83.3
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 6.5e-50 200.7 114 83.3
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 6.5e-50 200.7 114 83.3
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 6.5e-50 200.7 113 81.4
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 6.5e-50 200.7 113 80.5
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 8.5e-50 200.3 113 82.3
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 8.5e-50 200.3 113 81.4
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 8.5e-50 200.3 113 80.5
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 8.5e-50 200.3 113 80.5
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.5e-49 199.5 112 83.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.5e-49 199.5 113 83.2
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.5e-49 199.5 113 82.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.5e-49 199.5 113 78.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.2e-49 198.4 113 81.4
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.2e-49 198.4 114 80.7
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.2e-49 198.4 114 80.7
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 3.2e-49 198.4 113 78.8
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 4.2e-49 198.0 113 79.6
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.2e-49 198.0 113 81.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 4.2e-49 198.0 113 81.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 4.2e-49 198.0 114 78.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.5e-49 197.6 114 83.3
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 9.4e-49 196.8 113 77.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.2e-48 196.4 113 81.4
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.2e-48 196.4 114 78.9
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.2e-48 196.4 114 81.6
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.6e-48 196.1 113 80.5
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.1e-48 195.7 111 81.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.1e-48 195.7 114 79.8
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.7e-48 195.3 113 79.6
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.7e-48 195.3 113 79.6
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.7e-48 195.3 113 79.6
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 4.7e-48 194.5 130 72.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.0e-47 193.4 113 79.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.4e-47 193.0 120 77.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.4e-47 193.0 113 76.1
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 4.0e-47 191.4 113 78.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 8.8e-47 190.3 113 77.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.2e-46 189.9 114 78.1
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.5e-46 189.5 113 78.8
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.5e-46 189.5 113 77.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 3.4e-46 188.3 113 78.8
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.4e-46 188.3 113 75.2
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.5e-46 187.2 114 78.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 9.8e-46 186.8 114 75.4
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 9.8e-46 186.8 119 74.8
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.2e-45 185.7 113 77.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.8e-45 185.3 113 77.0
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.4e-44 182.2 109 78.9
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 5.4e-44 181.0 113 71.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 2.0e-43 179.1 114 72.8
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.6e-40 168.3 114 69.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.0e-39 165.2 113 65.5
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 4.4e-38 161.4 113 65.5
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-37 157.9 114 63.2
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.3e-37 157.1 114 64.0
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.4e-36 155.6 113 63.7
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 6.8e-31 137.5 117 61.5
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.4e-28 129.0 71 85.9
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 4.1e-28 128.3 66 87.9
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.9e-26 121.7 112 54.5
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.9e-25 119.4 111 50.5
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.6e-25 117.9 72 77.8
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.1e-23 112.1 128 44.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 2.0e-22 109.4 113 54.9
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 4.4e-22 108.2 113 50.4
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 8.3e-21 104.0 119 42.0
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-20 103.6 116 43.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.9e-17 92.8 56 75.0
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.5e-17 90.5 113 44.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.1e-16 89.4 84 54.8
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.2e-13 79.3 63 54.0
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.4e-13 77.8 47 78.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.6e-11 73.2 43 69.8
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 6.6e-10 67.8 40 70.0


User provided reference genes

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