Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 0.0e+00 1351.3 709 100.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 5.4e-269 931.0 723 67.9
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.6e-268 929.5 723 67.8
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 8.0e-265 917.1 722 66.1
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 6.1e-257 891.0 725 65.1
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.3e-243 846.7 728 60.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.1e-237 825.1 723 61.4
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 4.7e-233 811.6 729 59.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.0e-232 808.5 725 58.1
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 2.0e-231 806.2 731 57.6
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 3.4e-231 805.4 709 61.6
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.8e-231 804.7 724 58.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.8e-230 802.0 735 59.2
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.1e-229 800.4 677 62.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.4e-229 800.0 743 59.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.2e-229 798.9 722 58.9
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 5.1e-227 791.6 713 61.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 4.7e-225 785.0 736 57.5
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-224 783.9 733 58.1
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.9e-224 781.2 721 57.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.9e-222 775.8 724 57.2
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 8.4e-222 774.2 726 56.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.4e-221 771.5 709 57.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.2e-220 770.4 700 59.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.1e-220 769.6 737 56.2
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 3.5e-220 768.8 719 57.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.8e-220 767.7 715 58.6
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-219 766.9 724 58.6
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.5e-218 763.5 711 59.5
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.9e-218 763.1 727 56.0
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.5e-218 762.7 726 56.5
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.3e-217 760.4 711 57.2
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.3e-217 760.4 748 55.2
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 2.8e-217 759.2 741 57.2
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.1e-216 755.7 725 57.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 5.3e-216 755.0 709 57.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-215 753.8 741 56.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-215 753.8 741 56.1
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.5e-215 753.4 721 55.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.7e-214 750.0 708 57.8
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 3.8e-214 748.8 718 56.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.9e-213 746.5 723 56.2
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.6e-212 743.4 722 56.1
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.1e-212 743.0 716 55.7
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.7e-212 742.7 707 56.6
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.8e-211 740.0 709 56.3
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 3.9e-211 738.8 715 56.4
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 6.7e-211 738.0 719 55.9
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.1e-210 737.3 713 56.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.9e-210 736.5 723 55.9
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 9.6e-210 734.2 601 64.9
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.2e-209 731.5 719 55.8
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 4.0e-208 728.8 715 53.8
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 9.0e-208 727.6 711 54.9
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.4e-207 725.7 715 53.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 4.5e-207 725.3 720 53.3
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 5.8e-207 724.9 712 55.3
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 2.9e-206 722.6 721 55.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.4e-205 720.3 723 55.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.5e-205 719.5 721 53.3
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 3.2e-205 719.2 741 54.9
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.2e-204 717.2 739 54.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 3.9e-203 712.2 719 54.4
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 6.7e-203 711.4 727 53.9
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 5.6e-202 708.4 725 53.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 7.4e-202 708.0 741 54.5
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 9.6e-202 707.6 740 54.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 8.2e-201 704.5 759 50.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.0e-199 699.9 678 56.0
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.6e-199 699.5 718 53.3
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.4e-199 699.1 712 54.2
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-198 696.4 712 53.8
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-198 696.0 718 53.3
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.9e-197 693.3 707 54.0
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.5e-197 693.0 718 53.1
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 5.5e-197 691.8 674 54.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.6e-196 688.7 805 51.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.7e-195 684.9 718 52.9
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.8e-193 679.5 717 52.2
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 3.1e-192 676.0 639 56.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.7e-190 670.2 636 58.5
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 5.5e-189 665.2 741 52.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 9.4e-189 664.5 724 50.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 9.4e-189 664.5 741 49.9
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.2e-188 664.1 750 52.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.2e-188 664.1 715 50.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.6e-188 663.7 727 51.4
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.6e-188 662.5 724 50.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 6.1e-188 661.8 725 50.6
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.9e-187 659.1 735 49.9
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 5.1e-187 658.7 723 50.3
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.0e-186 656.8 724 50.0
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.0e-186 656.8 732 49.3
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.3e-186 655.6 735 49.4
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.4e-186 654.8 735 49.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.3e-185 654.1 648 55.4
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.3e-185 654.1 630 57.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.8e-185 652.9 724 49.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.2e-183 647.5 714 50.3
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.0e-183 646.7 727 50.5
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 3.4e-183 646.0 709 50.8
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 5.9e-183 645.2 756 49.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.2e-182 643.3 723 49.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.4e-181 640.6 723 49.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 5.5e-181 638.6 771 48.4
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.8e-177 626.3 707 49.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.4e-173 614.0 620 54.2
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 7.7e-167 591.7 640 50.9
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.2e-166 590.1 709 47.1
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.7e-158 563.9 766 45.6
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.2e-157 559.7 640 48.3
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-154 551.2 682 46.9
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 5.9e-143 512.3 532 54.3
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.3e-142 511.1 667 45.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-141 507.3 499 52.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.7e-129 467.6 736 40.5
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.4e-128 463.8 711 40.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 4.0e-123 446.4 810 36.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.6e-122 442.2 752 39.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.1e-115 421.8 746 36.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.2e-96 356.7 874 31.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.2e-87 328.6 557 37.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.8e-86 324.7 482 38.4
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.1e-83 313.5 502 39.8
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.2e-64 249.6 427 36.5
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.9e-62 243.8 665 27.8
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 9.4e-48 196.1 193 50.8
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.1e-47 194.9 224 46.4
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-46 192.2 224 47.3
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 2.8e-44 184.5 299 39.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-42 178.7 134 65.7
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 6.5e-41 173.3 127 68.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 4.1e-35 154.1 96 70.8
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.1e-32 146.0 98 73.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.9e-32 145.2 166 51.2
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.8e-30 138.7 152 50.0
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.3e-30 138.3 95 69.5
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 3.7e-28 131.0 107 55.1
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.5e-26 124.4 246 39.0
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.1e-16 92.8 95 53.7
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 7.3e-16 90.1 74 58.1
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 6.8e-14 83.6 124 43.5
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 8.3e-12 76.6 439 24.6
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.1e-08 66.2 78 42.3
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 1.5e-08 65.9 83 42.2
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.5e-08 65.1 78 41.0
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 4.3e-08 64.3 78 43.6
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 5.6e-08 63.9 74 40.5
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 1.2e-07 62.8 78 39.7
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 1.2e-07 62.8 78 37.2
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 1.6e-07 62.4 59 50.8
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.6e-07 62.4 178 30.9
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 2.8e-07 61.6 63 46.0
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 3.6e-07 61.2 63 44.4
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 4.7e-07 60.8 63 47.6
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 6.2e-07 60.5 80 42.5
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 8.1e-07 60.1 65 46.2
Medtr2g084615 Medicago truncatula HOM05D001312 ORTHO05D001832 1.1e-06 59.7 205 29.8
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 1.4e-06 59.3 167 28.7
THA.LOC104801160 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.4e-06 59.3 74 40.5
MSTRG.7359 Avicennia marina HOM05D001439 ORTHO05D002726 1.8e-06 58.9 59 47.5
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.8e-06 58.9 44 65.9
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 5.2e-06 57.4 184 27.2
Sed0000156 Sechium edule HOM05D001439 ORTHO05D002726 5.2e-06 57.4 63 46.0
CAN.G919.4 Capsicum annuum HOM05D001312 ORTHO05D001832 8.9e-06 56.6 173 29.5
CDE02G1918 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 8.9e-06 56.6 184 27.7
CDE10G1054 Ceratophyllum demersum HOM05D001439 ORTHO05D002726 8.9e-06 56.6 78 37.2
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 8.9e-06 56.6 161 31.7
Peaxi162Scf00845g00120 Petunia axillaris HOM05D001439 ORTHO05D002726 8.9e-06 56.6 76 39.5


User provided reference genes

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