Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 7.8e-85 317.0 150 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.0e-60 235.3 166 71.1
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.5e-59 232.3 166 69.9
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 3.3e-59 231.9 165 69.7
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.8e-58 228.8 169 68.6
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 2.8e-58 228.8 166 69.9
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 4.7e-58 228.0 171 67.8
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 4.7e-58 228.0 169 66.9
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 6.2e-58 227.6 169 68.0
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.1e-57 226.9 190 64.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 4.0e-57 224.9 166 68.7
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 6.8e-57 224.2 166 66.9
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.8e-57 224.2 166 67.5
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 8.9e-57 223.8 170 67.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-56 223.4 166 67.5
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.4e-56 221.9 166 66.9
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.4e-56 221.9 166 66.9
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 7.6e-56 220.7 163 66.3
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 9.9e-56 220.3 159 67.9
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 9.9e-56 220.3 163 66.3
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 9.9e-56 220.3 163 66.3
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.3e-55 219.9 164 66.5
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 2.9e-55 218.8 163 65.6
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.8e-55 218.4 164 66.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.8e-55 218.4 166 66.3
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 4.9e-55 218.0 169 65.7
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 6.4e-55 217.6 168 64.3
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 6.4e-55 217.6 165 67.3
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 8.4e-55 217.2 166 65.7
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.1e-54 216.9 164 66.5
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.1e-54 216.9 163 65.6
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.1e-54 216.9 168 64.9
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.4e-54 216.5 171 63.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.4e-54 216.5 168 64.9
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.4e-54 216.5 168 64.9
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.9e-54 216.1 162 66.0
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.4e-54 215.7 168 64.3
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-54 214.9 170 63.5
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.1e-54 214.9 170 63.5
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.1e-54 214.9 165 64.2
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 4.1e-54 214.9 163 66.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.1e-54 214.9 165 64.8
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.4e-54 214.5 168 64.3
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 5.4e-54 214.5 162 65.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.4e-54 214.5 166 64.5
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 7.1e-54 214.2 168 64.3
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 7.1e-54 214.2 168 64.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 9.2e-54 213.8 171 63.2
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 9.2e-54 213.8 164 65.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.2e-53 213.4 163 62.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.2e-53 213.4 167 63.5
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.6e-53 213.0 168 63.7
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.6e-53 213.0 166 64.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.6e-53 213.0 166 64.5
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.6e-53 213.0 165 64.8
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.1e-53 212.6 168 63.7
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.1e-53 212.6 166 64.5
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.7e-53 212.2 166 64.5
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.5e-53 211.8 168 64.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.5e-53 211.8 195 58.5
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 4.6e-53 211.5 168 63.7
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 4.6e-53 211.5 169 62.7
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 6.0e-53 211.1 166 63.9
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 6.0e-53 211.1 170 64.1
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 6.0e-53 211.1 164 64.0
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 7.8e-53 210.7 168 63.7
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 7.8e-53 210.7 166 63.9
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 7.8e-53 210.7 166 63.9
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.0e-52 210.3 168 63.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.0e-52 210.3 168 63.7
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-52 210.3 166 63.9
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.0e-52 210.3 165 63.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.3e-52 209.9 161 64.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.7e-52 209.5 162 64.8
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.7e-52 209.5 162 64.8
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.7e-52 209.5 166 63.9
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 3.9e-52 208.4 165 63.0
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 5.1e-52 208.0 162 64.8
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 8.6e-52 207.2 161 64.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.1e-51 206.8 171 63.7
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.5e-51 206.5 161 62.7
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.5e-51 205.7 171 60.8
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.3e-51 205.3 160 61.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.6e-50 203.0 164 62.2
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 6.2e-50 201.1 166 61.4
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.1e-49 198.7 163 61.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.2e-48 196.8 129 74.4
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 9.9e-48 193.7 171 56.7
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-47 193.0 159 57.9
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.9e-47 191.4 117 76.9
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 6.4e-47 191.0 122 74.6
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.2e-46 188.7 123 74.0
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 4.2e-46 188.3 123 72.4
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.4e-46 188.0 159 57.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 9.3e-46 187.2 123 72.4
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 9.3e-46 187.2 163 57.1
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 6.0e-45 184.5 129 68.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.5e-43 179.9 118 72.0
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.9e-43 179.5 118 72.9
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.3e-42 176.8 128 67.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.3e-42 176.8 118 70.3
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-42 176.4 125 68.0
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.6e-42 175.3 126 66.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.1e-41 173.7 144 61.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.4e-41 172.6 163 55.2
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.7e-39 166.4 118 68.6
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.8e-39 165.2 159 51.6
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.4e-38 162.5 137 58.4
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 4.6e-37 158.3 109 71.6
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 8.7e-36 154.1 108 69.4
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.1e-33 145.6 106 65.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.6e-32 142.5 148 50.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 4.5e-32 141.7 147 52.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 9.3e-30 134.0 137 51.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 6.0e-29 131.3 116 59.5
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.3e-28 129.4 166 43.4
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.7e-28 127.9 158 42.4
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.7e-28 127.5 170 42.9
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.3e-26 123.6 99 67.7
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 8.2e-26 120.9 168 41.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 8.2e-26 120.9 97 61.9
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 4.0e-25 118.6 96 57.3
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.0e-23 114.0 158 40.5
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.2e-23 112.8 164 39.0
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.8e-20 103.2 78 64.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.6e-18 96.7 151 37.1
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.2e-18 96.3 146 42.5
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.4e-17 93.6 72 65.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.3e-17 91.7 85 51.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.2e-14 82.4 72 61.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.3e-12 76.3 70 58.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.8e-10 69.3 31 90.3
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.4e-09 66.2 64 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.3e-07 60.5 73 45.2


User provided reference genes

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