Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 3.4e-133 478.4 251 100.0
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 5.5e-67 258.5 237 63.3
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 7.9e-58 228.0 242 57.9
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.1e-56 224.2 217 60.4
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.2e-55 219.9 242 56.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 4.1e-54 215.7 212 58.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 5.3e-54 215.3 240 55.0
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.9e-54 214.9 243 55.1
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 9.1e-54 214.5 238 56.3
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.5e-53 213.8 230 56.5
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 7.7e-53 211.5 212 57.5
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 2.2e-52 209.9 236 54.2
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 5.0e-52 208.8 222 55.0
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 6.5e-52 208.4 229 57.6
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.9e-51 206.8 240 53.3
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 3.2e-51 206.1 215 56.7
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 9.4e-51 204.5 222 56.8
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 7.4e-48 194.9 221 52.9
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.3e-47 194.1 220 55.5
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 6.3e-47 191.8 221 52.0
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.4e-46 189.9 221 54.8
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 3.1e-46 189.5 242 51.2
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.2e-45 187.6 218 52.3
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.6e-45 187.2 213 53.5
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.6e-45 187.2 242 51.7
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.0e-44 184.5 214 53.3
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.3e-44 184.1 217 53.9
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 3.8e-44 182.6 171 62.6
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 3.8e-44 182.6 218 53.7
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 6.5e-44 181.8 248 50.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.1e-43 181.0 221 51.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.1e-43 181.0 224 53.1
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 3.2e-43 179.5 208 54.3
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 7.2e-43 178.3 232 49.6
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 7.2e-43 178.3 236 50.8
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 3.6e-42 176.0 232 48.7
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 4.7e-42 175.6 232 46.1
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 6.1e-42 175.3 217 50.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.0e-41 174.5 236 49.6
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.8e-41 173.7 212 51.4
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 3.0e-41 172.9 210 52.4
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 5.2e-41 172.2 236 48.3
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 8.8e-41 171.4 238 47.9
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 8.8e-41 171.4 214 51.4
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.1e-40 171.0 230 48.7
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 2.0e-40 170.2 216 50.9
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.2e-39 166.8 231 47.6
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.8e-38 163.7 225 49.3
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 2.4e-38 163.3 186 55.9
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 2.4e-38 163.3 235 47.2
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 5.3e-38 162.2 211 47.4
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 5.3e-38 162.2 220 45.0
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 5.3e-38 162.2 241 48.1
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 5.3e-38 162.2 221 49.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 7.0e-38 161.8 222 46.8
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 7.0e-38 161.8 221 50.2
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-37 161.0 243 47.3
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.0e-37 160.2 235 48.9
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.7e-37 159.8 238 47.9
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 5.9e-37 158.7 215 47.9
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 7.7e-37 158.3 231 48.9
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 7.7e-37 158.3 216 47.7
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.0e-36 157.9 220 45.9
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.0e-36 157.9 220 45.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.3e-36 157.5 229 46.3
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.3e-36 157.5 216 47.2
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.7e-36 157.1 222 45.0
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.7e-36 157.1 228 46.5
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 3.8e-36 156.0 222 48.2
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 3.8e-36 156.0 227 45.4
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.8e-36 156.0 222 48.6
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 3.8e-36 156.0 237 45.6
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 6.5e-36 155.2 237 46.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 8.5e-36 154.8 232 42.2
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.9e-35 153.7 236 45.8
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.2e-35 152.9 238 46.6
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 3.2e-35 152.9 219 46.6
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.2e-35 152.9 212 46.7
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.2e-35 152.9 235 46.4
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 5.5e-35 152.1 219 47.0
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 9.4e-35 151.4 208 48.1
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-34 151.0 212 46.2
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.6e-34 150.6 179 52.0
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.7e-34 149.8 213 46.9
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 6.1e-34 148.7 213 48.8
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.0e-33 147.9 225 45.8
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.0e-33 147.9 184 50.5
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 3.0e-33 146.4 236 41.5
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 4.0e-33 146.0 224 44.6
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 4.0e-33 146.0 219 43.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 5.2e-33 145.6 216 46.3
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.2e-32 144.4 229 43.2
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 3.4e-32 142.9 217 45.6
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 4.4e-32 142.5 219 42.5
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.7e-32 142.1 218 41.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.7e-32 142.1 218 41.3
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 7.5e-32 141.7 246 39.8
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.3e-31 141.0 261 39.8
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.1e-30 137.9 209 44.0
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.1e-30 137.9 213 44.6
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 4.1e-30 136.0 209 44.0
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.4e-30 135.6 220 43.6
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.2e-29 134.4 210 45.2
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.6e-29 134.0 272 40.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 2.0e-29 133.7 218 41.3
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.5e-29 132.9 210 43.8
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.0e-28 131.3 216 42.1
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.1e-27 127.9 210 42.9
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 3.2e-27 126.3 284 38.0
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 2.1e-26 123.6 134 54.5
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.0e-25 119.8 216 40.7
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.2e-18 97.8 180 37.8
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-18 97.1 110 52.7
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.1e-18 97.1 89 57.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 7.5e-16 88.6 110 50.0
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 4.9e-15 85.9 236 30.9
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-14 84.3 138 42.0
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 2.4e-14 83.6 92 50.0
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.4e-14 82.4 84 53.6
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 5.9e-13 79.0 218 32.6
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 3.3e-11 73.2 71 53.5
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.6e-10 70.9 81 54.3
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.7e-07 60.8 73 49.3
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 4.9e-07 59.3 44 70.5


User provided reference genes

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