Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C798T10 Lonicera japonica HOM05D000029 ORTHO05D000854 1.4e-108 397.9 257 100.0
Migut.C00856 Erythranthe guttata HOM05D000029 ORTHO05D000854 8.1e-51 206.1 258 58.9
Hma1.2p1_0733F.1_g210220 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 1.6e-43 181.8 252 46.0
Peaxi162Scf00553g00620 Petunia axillaris HOM05D000029 ORTHO05D000854 3.8e-40 170.6 248 48.8
THA.LOC104813786 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 9.3e-39 166.0 250 40.8
Thecc.08G046900 Theobroma cacao HOM05D000029 ORTHO05D000854 4.6e-38 163.7 235 53.6
Migut.N03171 Erythranthe guttata HOM05D000029 ORTHO05D000854 1.3e-37 162.2 255 55.7
TAR625G0714 Trochodendron aralioides HOM05D000029 ORTHO05D000854 6.6e-37 159.8 249 51.8
Prupe.1G363300 Prunus persica HOM05D000029 ORTHO05D000854 9.6e-36 156.0 251 54.2
Duzib116G0141 Durio zibethinus HOM05D000029 ORTHO05D000854 2.1e-35 154.8 222 59.9
SalBow7G3307 Salvia bowleyana HOM05D000029 ORTHO05D000854 2.1e-35 154.8 247 58.3
PSO541G5153 Papaver somniferum HOM05D000029 ORTHO05D000854 4.8e-35 153.7 250 40.0
Gohir.A02G082800 Gossypium hirsutum HOM05D000029 ORTHO05D000854 6.2e-35 153.3 221 61.5
Dinv31865 Davidia involucrata HOM05D000029 ORTHO05D000854 1.4e-34 152.1 168 51.2
PGR031G0445 Punica granatum HOM05D000029 ORTHO05D000854 1.4e-34 152.1 245 43.7
COL.COLO4_26126 Corchorus olitorius HOM05D000029 ORTHO05D000854 3.1e-34 151.0 222 42.8
Nitab4.5_0003349g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 3.1e-34 151.0 256 51.2
Rhsim11G0137300 Rhododendron simsii HOM05D000029 ORTHO05D000854 5.3e-34 150.2 258 56.2
RcHm_v2.0_Chr2g0120661 Rosa chinensis HOM05D000029 ORTHO05D000854 2.0e-33 148.3 246 50.0
DCAR_014030 Daucus carota HOM05D000029 ORTHO05D008832 5.8e-33 146.7 228 42.5
Gohir.D05G188300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 9.9e-33 146.0 222 42.8
ECA238G2525 Erigeron canadensis HOM05D000029 ORTHO05D000854 1.3e-32 145.6 251 51.0
PSO675G7340 Papaver somniferum HOM05D000029 ORTHO05D000854 1.3e-32 145.6 250 46.4
Actinidia37938 Actinidia chinensis HOM05D000029 ORTHO05D000854 8.4e-32 142.9 233 43.3
PGSC0003DMG400009941 Solanum tuberosum HOM05D000029 ORTHO05D000854 1.1e-31 142.5 251 51.0
Cc10_g01470 Coffea canephora HOM05D000029 ORTHO05D000854 4.2e-31 140.6 223 57.8
SalBow8G4622 Salvia bowleyana HOM05D000029 ORTHO05D000854 7.1e-31 139.8 256 52.3
CiPaw.07G147700 Carya illinoinensis HOM05D000029 ORTHO05D008832 1.2e-30 139.0 220 38.2
Nn5g30753 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.2e-30 139.0 224 53.6
Gorai.009G269700 Gossypium raimondii HOM05D000029 ORTHO05D000854 2.1e-30 138.3 220 41.8
DCAR_022991 Daucus carota HOM05D000029 ORTHO05D000854 2.7e-30 137.9 237 39.7
Lj4C21T5 Lonicera japonica HOM05D000029 ORTHO05D000854 2.7e-30 137.9 198 42.9
Dinv39533 Davidia involucrata HOM05D000029 ORTHO05D000854 7.9e-30 136.3 235 43.4
Aa31LG4G6020 Aethionema arabicum HOM05D000029 ORTHO05D000854 1.0e-29 136.0 222 38.3
AL2G35810 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 1.0e-29 136.0 227 39.6
Rhsim07G0250600 Rhododendron simsii HOM05D000029 ORTHO05D000854 1.0e-29 136.0 235 56.2
CARHR069240 Cardamine hirsuta HOM05D000029 ORTHO05D000854 1.3e-29 135.6 227 38.3
THA.LOC104811419 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 1.8e-29 135.2 249 35.7
Thhalv10018069m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 3.0e-29 134.4 231 39.0
Gohir.A05G185500 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.0e-29 134.4 222 41.9
Sp5g30940 Schrenkiella parvula HOM05D000029 ORTHO05D000854 3.0e-29 134.4 226 38.5
RcHm_v2.0_Chr2g0119001 Rosa chinensis HOM05D000029 ORTHO05D000854 3.9e-29 134.0 246 49.6
Gohir.D02G098300 Gossypium hirsutum HOM05D000029 ORTHO05D000854 8.7e-29 132.9 222 55.0
Lj3g0005112 Lotus japonicus HOM05D000029 ORTHO05D000854 8.7e-29 132.9 263 46.4
CSS0021294 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.5e-28 132.1 209 46.9
CSS0049239 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 1.5e-28 132.1 209 41.1
CSS0031229 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 4.3e-28 130.6 232 41.8
Oeu061974.1 Olea europaea HOM05D000029 ORTHO05D000854 4.3e-28 130.6 261 47.1
TWI56G1368 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 4.3e-28 130.6 221 38.5
CAN.G311.45 Capsicum annuum HOM05D000029 ORTHO05D000854 7.4e-28 129.8 249 47.4
Gorai.005G112100 Gossypium raimondii HOM05D000029 ORTHO05D000854 9.6e-28 129.4 222 54.5
HanXRQChr14g0431061 Helianthus annuus HOM05D000029 ORTHO05D000854 1.6e-27 128.6 228 51.8
BcaC08g47324 Brassica carinata HOM05D000029 ORTHO05D000854 2.1e-27 128.3 228 36.8
C06p49770 Brassica napus HOM05D000029 ORTHO05D000854 2.1e-27 128.3 228 36.8
BolC6t40016H Brassica oleracea HOM05D000029 ORTHO05D000854 2.1e-27 128.3 228 36.8
TWI12G1049 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 2.1e-27 128.3 221 52.5
Atru.chr13.260 Acer truncatum HOM05D000029 ORTHO05D000854 2.8e-27 127.9 256 51.2
Lsat_1_v5_gn_2_12620 Lactuca sativa HOM05D000029 ORTHO05D000854 3.7e-27 127.5 160 67.5
MBI09_g22807_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 3.7e-27 127.5 255 44.3
Actinidia00278 Actinidia chinensis HOM05D000029 ORTHO05D000854 8.1e-27 126.3 199 46.7
SGA_v2.0_scaffold92G28209 Striga asiatica HOM05D000029 ORTHO05D000854 8.1e-27 126.3 227 55.1
Ciclev10000156m.g Citrus clementina HOM05D000029 ORTHO05D000854 1.1e-26 125.9 225 45.8
Gohir.A05G256700 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.1e-26 125.9 221 55.7
A07p41350 Brassica napus HOM05D000029 ORTHO05D000854 1.4e-26 125.6 228 36.4
BraA07t31668Z Brassica rapa HOM05D000029 ORTHO05D000854 1.4e-26 125.6 228 36.4
Manes.05G145600 Manihot esculenta HOM05D000029 ORTHO05D000854 2.4e-26 124.8 225 39.6
TPR.G30515 Trifolium pratense HOM05D000029 ORTHO05D000854 4.0e-26 124.0 259 44.4
Cfa013973 Carpinus fangiana HOM05D000029 ORTHO05D000854 5.3e-26 123.6 243 48.6
ECA238G3421 Erigeron canadensis HOM05D000029 ORTHO05D000854 5.3e-26 123.6 179 59.2
Duzib041G0705 Durio zibethinus HOM05D000029 ORTHO05D000854 9.0e-26 122.9 222 38.3
RcHm_v2.0_Chr2g0119031 Rosa chinensis HOM05D000029 ORTHO05D000854 1.2e-25 122.5 246 48.8
Oeu014167.2 Olea europaea HOM05D000029 ORTHO05D000854 1.5e-25 122.1 226 54.4
Medtr4g070950 Medicago truncatula HOM05D000029 ORTHO05D000854 7.6e-25 119.8 259 48.3
Ciclev10003935m.g Citrus clementina HOM05D000029 ORTHO05D000854 9.9e-25 119.4 197 41.1
Lsat_1_v5_gn_8_30001 Lactuca sativa HOM05D000029 ORTHO05D000854 2.9e-24 117.9 232 48.3
Nn6g32016 Nelumbo nucifera HOM05D000029 ORTHO05D000854 2.9e-24 117.9 222 49.5
Solyc04g081590.4 Solanum lycopersicum HOM05D000029 ORTHO05D000854 4.2e-23 114.0 251 45.0
vmacro04366 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 1.2e-22 112.5 230 43.9
Eucgr.H00964 Eucalyptus grandis HOM05D000029 ORTHO05D000854 1.6e-22 112.1 244 49.2
ECA238G2013 Erigeron canadensis HOM05D000029 ORTHO05D000854 2.1e-22 111.7 200 52.5
Cfa013972 Carpinus fangiana HOM05D000029 ORTHO05D000854 2.7e-22 111.3 226 35.4
AT1G75820 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 6.0e-22 110.2 233 34.8
Gorai.009G193600 Gossypium raimondii HOM05D000029 ORTHO05D000854 6.0e-22 110.2 165 41.8
CiPaw.07G147600 Carya illinoinensis HOM05D000029 ORTHO05D000854 7.9e-22 109.8 223 50.2
Medtr4g070970 Medicago truncatula HOM05D000029 ORTHO05D000854 1.0e-21 109.4 214 51.4
QL02p012034 Quercus lobata HOM05D000029 ORTHO05D000854 2.3e-21 108.2 227 38.3
arahy.Tifrunner.gnm1.ann1.8BA7G9 Arachis hypogaea HOM05D000029 ORTHO05D000854 3.0e-21 107.8 178 38.2
Haze_22657 Corylus avellana HOM05D000029 ORTHO05D000854 3.0e-21 107.8 222 51.4
MD15G1010800 Malus domestica HOM05D000029 ORTHO05D000854 3.0e-21 107.8 229 51.5
arahy.Tifrunner.gnm1.ann1.97EMNK Arachis hypogaea HOM05D000029 ORTHO05D000854 5.1e-21 107.1 178 38.2
Cpa.g.sc26.309 Carica papaya HOM05D000029 ORTHO05D000854 1.5e-20 105.5 150 61.3
Gohir.D05G258350 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.5e-20 105.5 173 39.3
SGA_v2.0_scaffold19G08549 Striga asiatica HOM05D000029 ORTHO05D000854 1.5e-20 105.5 137 65.7
FAN15G2748 Fragaria x ananassa HOM05D000029 ORTHO05D000854 2.5e-20 104.8 228 49.6
Sabra05G0187000 Salix brachista HOM05D000029 ORTHO05D013250 2.5e-20 104.8 176 56.2
QL02p012090 Quercus lobata HOM05D000029 ORTHO05D000854 3.3e-20 104.4 171 52.6
GSVIVG01009941001 Vitis vinifera HOM05D000029 ORTHO05D000854 4.3e-20 104.0 158 62.7
Psat7g183240 Pisum sativum HOM05D000029 ORTHO05D000854 7.4e-20 103.2 260 32.3
Cfa013974 Carpinus fangiana HOM05D000029 ORTHO05D000854 9.6e-20 102.8 168 58.9
Ca_20907_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 9.6e-20 102.8 177 50.3
Lalb_Chr03g0025491 Lupinus albus HOM05D000029 ORTHO05D000854 2.1e-19 101.7 238 45.8
FAN20G1462 Fragaria x ananassa HOM05D000029 ORTHO05D000854 2.8e-19 101.3 228 50.0
MD08G1010700 Malus domestica HOM05D000029 ORTHO05D000854 3.7e-19 100.9 223 50.2
Carub.0002s2267 Capsella rubella HOM05D000029 ORTHO05D000854 4.8e-19 100.5 224 33.0
RcHm_v2.0_Chr6g0303151 Rosa chinensis HOM05D000029 ORTHO05D000854 2.4e-18 98.2 228 43.4
Lalb_Chr01g0002311 Lupinus albus HOM05D000029 ORTHO05D000854 3.1e-18 97.8 260 43.5
TAR381G0556 Trochodendron aralioides HOM05D000029 ORTHO05D000854 3.1e-18 97.8 233 47.2
TAR381G0687 Trochodendron aralioides HOM05D000029 ORTHO05D000854 3.1e-18 97.8 233 47.2
MELO3C003743.2 Cucumis melo HOM05D000029 ORTHO05D000854 4.0e-18 97.4 144 40.3
ClCG05G018180 Citrullus lanatus HOM05D000029 ORTHO05D000854 1.2e-17 95.9 145 37.2
CsaV3_3G045960 Cucumis sativus L. HOM05D000029 ORTHO05D000854 4.5e-17 94.0 144 38.2
Lsat_1_v5_gn_8_30160 Lactuca sativa HOM05D000029 ORTHO05D000854 4.5e-17 94.0 233 43.3
Prupe.6G163000 Prunus persica HOM05D000029 ORTHO05D000854 5.8e-17 93.6 241 49.0
CANSAT25G3014 Cannabis sativa HOM05D000029 ORTHO05D000854 7.6e-17 93.2 224 44.6
QL02p012056 Quercus lobata HOM05D000029 ORTHO05D000854 7.6e-17 93.2 97 51.5
VMungo1127G1012 Vigna mungo HOM05D000029 ORTHO05D000854 7.6e-17 93.2 198 50.5
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 1.0e-16 92.8 81 56.8
Potri.005G241500 Populus trichocarpa HOM05D000029 ORTHO05D000854 1.0e-16 92.8 171 57.9
Sabra02G0016200 Salix brachista HOM05D000029 ORTHO05D000854 1.3e-16 92.4 133 66.9
FAN27G2151 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.7e-16 92.0 228 46.5
HanXRQChr12g0366831 Helianthus annuus HOM05D000029 ORTHO05D000854 1.7e-16 92.0 227 30.4
Sopen04g035200 Solanum pennellii HOM05D000029 ORTHO05D000854 3.8e-16 90.9 221 44.3
FvH4_2g38230 Fragaria vesca HOM05D000029 ORTHO05D000854 6.5e-16 90.1 151 58.9
Potri.002G019900 Populus trichocarpa HOM05D000029 ORTHO05D000854 3.2e-15 87.8 147 59.9
Phvul.011G042000 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 5.5e-15 87.0 160 48.8
Sc15g0004850 Simmondsia chinensis HOM05D000029 ORTHO05D000854 5.5e-15 87.0 151 53.6
Sc03g0007380 Simmondsia chinensis HOM05D000029 ORTHO05D000854 1.6e-14 85.5 160 58.1
BcaC08g47071 Brassica carinata HOM05D000029 ORTHO05D008832 4.6e-14 84.0 77 50.6
ECA238G1034 Erigeron canadensis HOM05D000029 ORTHO05D000854 4.6e-14 84.0 118 67.8
THA.LOC104798420 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 1.3e-13 82.4 259 42.5
Atru.chr13.263 Acer truncatum HOM05D000029 ORTHO05D000854 1.8e-13 82.0 172 50.6
Sc03g0007400 Simmondsia chinensis HOM05D017028 ORTHO05D016971 3.0e-13 81.3 106 48.1
Aqoxy6G02186 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 5.1e-13 80.5 236 42.8
Phvul.011G042100 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 8.7e-13 79.7 173 46.8
Glyma.11G114100 Glycine max HOM05D000029 ORTHO05D000854 1.1e-12 79.3 146 53.4
Sed0018613 Sechium edule HOM05D000029 ORTHO05D000854 1.1e-12 79.3 242 37.6
CDE04G0785 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 3.3e-12 77.8 203 36.5
Glyma.11G114200 Glycine max HOM05D000029 ORTHO05D000854 7.4e-12 76.6 132 53.8
HPP92_008346 Vanilla planifolia HOM05D000029 ORTHO05D000854 9.7e-12 76.3 104 41.3
Manes.11G162200 Manihot esculenta HOM05D000029 ORTHO05D000854 1.3e-11 75.9 95 46.3
Ah.11g039930 Amaranthus hybridus HOM05D000029 ORTHO05D000854 1.6e-11 75.5 100 45.0
Eucgr.H00963 Eucalyptus grandis HOM05D000029 ORTHO05D000854 1.6e-11 75.5 91 42.9
AUR62041480 Chenopodium quinoa HOM05D000029 ORTHO05D000854 3.7e-11 74.3 95 45.3
Hund05177 Selenicereus undatus HOM05D000029 ORTHO05D000854 8.2e-11 73.2 80 51.2
CDE02G0257 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 1.1e-10 72.8 72 51.4
Sc03g0007390 Simmondsia chinensis HOM05D017028 ORTHO05D016971 1.4e-10 72.4 107 43.9
Eucgr.D00508 Eucalyptus grandis HOM05D000029 ORTHO05D000854 5.3e-10 70.5 94 44.7
Hund16602 Selenicereus undatus HOM05D000029 ORTHO05D001395 9.0e-10 69.7 259 31.7
Glyma.12G040000 Glycine max HOM05D000029 ORTHO05D000854 1.2e-09 69.3 99 42.4
Carub.0008s2660 Capsella rubella HOM05D000029 ORTHO05D000854 4.5e-09 67.4 256 41.0
DCAR_025839 Daucus carota HOM05D000029 ORTHO05D000854 5.9e-09 67.0 255 42.4
Aa31LG1G16360 Aethionema arabicum HOM05D000029 ORTHO05D000854 1.0e-08 66.2 257 41.2
Ah.02g126560 Amaranthus hybridus HOM05D000349 ORTHO05D001395 3.8e-08 64.3 230 28.7
THA.LOC104819280 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 5.0e-08 63.9 260 38.5
AL8G43410 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 8.5e-08 63.2 256 39.5
AT5G65700 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.4e-07 62.4 259 39.0
EL10Ac3g05538 Beta vulgaris HOM05D000029 ORTHO05D000854 1.4e-07 62.4 233 41.2
AUR62040553 Chenopodium quinoa HOM05D000029 ORTHO05D000854 2.5e-07 61.6 80 42.5
Nitab4.5_0004219g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 3.2e-07 61.2 98 39.8
CDE03G0336 Ceratophyllum demersum HOM05D029111 ORTHO05D017484 7.2e-07 60.1 101 29.7
Eucgr.K00636 Eucalyptus grandis HOM05D000053 ORTHO05D000035 1.2e-06 59.3 117 37.6
Aa31LG4G18150 Aethionema arabicum HOM05D000029 ORTHO05D000854 1.6e-06 58.9 257 38.9
MBI06_g35672_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 1.6e-06 58.9 57 49.1
Eucgr.H01012 Eucalyptus grandis HOM05D004856 ORTHO05D005710 2.1e-06 58.5 139 29.5
PSO832G4229 Papaver somniferum HOM05D000071 ORTHO05D003524 2.7e-06 58.2 116 36.2
GSVIVG01016648001 Vitis vinifera HOM05D000094 ORTHO05D000455 2.7e-06 58.2 62 48.4
Eucgr.C00563 Eucalyptus grandis HOM05D000029 ORTHO05D001072 3.6e-06 57.8 103 35.9
SEGI_28524 Sequoiadendron giganteum HOM05D000029 ORTHO05D000854 3.6e-06 57.8 87 37.9
CSS0016185 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 4.6e-06 57.4 110 32.7
Lj4C171T2 Lonicera japonica HOM05D000029 ORTHO05D000854 4.6e-06 57.4 103 39.8
Potri.013G035900 Populus trichocarpa HOM05D000517 ORTHO05D000751 4.6e-06 57.4 244 27.0
RcHm_v2.0_Chr2g0119091 Rosa chinensis HOM05D000029 ORTHO05D000854 4.6e-06 57.4 126 34.1
Migut.N00644 Erythranthe guttata HOM05D000517 ORTHO05D000751 6.1e-06 57.0 198 25.3
FAN23G3125 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.1e-06 57.0 112 28.6
MBI01_g39229_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D008567 6.1e-06 57.0 251 44.2
Aqoxy5G03842_Aqoxy5G03843 Aquilegia oxysepala HOM05D000029 ORTHO05D006111 7.9e-06 56.6 88 43.2
BcaC08g47070 Brassica carinata HOM05D000029 ORTHO05D000854 7.9e-06 56.6 94 41.5
CARHR279690 Cardamine hirsuta HOM05D000029 ORTHO05D000854 7.9e-06 56.6 257 38.9


User provided reference genes

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