Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C791T10 Lonicera japonica HOM05D005397 ORTHO05D006493 5.5e-29 130.2 61 100.0
CSS0019191 Camellia sinensis var. sinensis HOM05D005397 ORTHO05D006493 2.0e-10 68.6 35 88.6
Actinidia37980 Actinidia chinensis HOM05D005397 ORTHO05D006493 2.6e-10 68.2 34 91.2
GSVIVG01022614001 Vitis vinifera HOM05D005397 ORTHO05D006493 4.4e-10 67.4 35 88.6
HanXRQChr02g0041801 Helianthus annuus HOM05D005397 ORTHO05D006493 5.7e-10 67.0 35 82.9
Oeu046246.1 Olea europaea HOM05D005397 ORTHO05D006493 5.7e-10 67.0 37 78.4
MSTRG.1224 Avicennia marina HOM05D005397 ORTHO05D006493 1.3e-09 65.9 35 82.9
vmacro04326 Vaccinium macrocarpon HOM05D005397 ORTHO05D006493 1.3e-09 65.9 35 85.7
Dinv31812 Davidia involucrata HOM05D005397 ORTHO05D006493 1.7e-09 65.5 35 88.6
Actinidia29797 Actinidia chinensis HOM05D005397 ORTHO05D006493 2.2e-09 65.1 34 85.3
Rhsim07G0244600 Rhododendron simsii HOM05D005397 ORTHO05D006493 2.2e-09 65.1 35 82.9
Manes.18G017200 Manihot esculenta HOM05D005397 ORTHO05D006493 2.8e-09 64.7 35 80.0
Nn5g29235 Nelumbo nucifera HOM05D005397 ORTHO05D006493 3.7e-09 64.3 35 82.9
Duzib093G1874 Durio zibethinus HOM05D005397 ORTHO05D006493 6.3e-09 63.5 40 72.5
ECA247G2991 Erigeron canadensis HOM05D005397 ORTHO05D006493 1.8e-08 62.0 35 82.9
Ciclev10000372m.g Citrus clementina HOM05D005397 ORTHO05D006493 2.4e-08 61.6 35 77.1
Cc10_g02070 Coffea canephora HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 80.0
Gohir.A05G188200 Gossypium hirsutum HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 74.3
Gohir.D05G191300 Gossypium hirsutum HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 74.3
Gorai.009G196600 Gossypium raimondii HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 74.3
Potri.005G235000 Populus trichocarpa HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 77.1
Sabra05G0181200 Salix brachista HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 77.1
SGA_v2.0_scaffold11G05874 Striga asiatica HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 77.1
TAR145G0001 Trochodendron aralioides HOM05D005397 ORTHO05D006493 4.1e-08 60.8 35 80.0
Atru.chr13.353 Acer truncatum HOM05D005397 ORTHO05D006493 6.9e-08 60.1 35 74.3
Aqoxy6G02360 Aquilegia oxysepala HOM05D005397 ORTHO05D006493 6.9e-08 60.1 35 80.0
Peaxi162Scf00287g01315 Petunia axillaris HOM05D005397 ORTHO05D006493 6.9e-08 60.1 35 77.1
HanXRQChr04g0106461 Helianthus annuus HOM05D005397 ORTHO05D006493 1.2e-07 59.3 35 77.1
Lalb_Chr14g0369691 Lupinus albus HOM05D005397 ORTHO05D006493 1.2e-07 59.3 35 71.4
CANSAT78G0864 Cannabis sativa HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 74.3
Cfa013909 Carpinus fangiana HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 74.3
COL.COLO4_26194 Corchorus olitorius HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 74.3
Haze_22588 Corylus avellana HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 74.3
Phvul.001G009500 Phaseolus vulgaris HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 74.3
PGR083G1852 Punica granatum HOM05D005397 ORTHO05D006493 1.5e-07 58.9 35 80.0
Lsat_1_v5_gn_1_16260 Lactuca sativa HOM05D005397 ORTHO05D006493 2.0e-07 58.5 35 80.0
Nitab4.5_0011205g0010 Nicotiana tabacum HOM05D005397 ORTHO05D006493 2.0e-07 58.5 35 74.3
Sc02g0005180 Simmondsia chinensis HOM05D005397 ORTHO05D006493 2.0e-07 58.5 35 80.0
TAR625G0278 Trochodendron aralioides HOM05D005397 ORTHO05D006493 2.0e-07 58.5 33 84.8
Migut.C00793 Erythranthe guttata HOM05D005397 ORTHO05D006493 2.6e-07 58.2 35 77.1
Lalb_Chr24g0398791 Lupinus albus HOM05D005397 ORTHO05D006493 2.6e-07 58.2 35 68.6
MD15G1016900 Malus domestica HOM05D005397 ORTHO05D006493 2.6e-07 58.2 35 74.3
CiPaw.07G153900 Carya illinoinensis HOM05D005397 ORTHO05D006493 3.4e-07 57.8 34 73.5
Ca_13392_v3 Cicer arietinum L. HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
FvH4_2g39070 Fragaria vesca HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
FAN27G0831 Fragaria x ananassa HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
Lj5g0007176 Lotus japonicus HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
PSO541G6090 Papaver somniferum HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 74.3
Prupe.1G370400 Prunus persica HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
RcHm_v2.0_Chr6g0302171 Rosa chinensis HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 71.4
Thecc.08G038000 Theobroma cacao HOM05D005397 ORTHO05D006493 3.4e-07 57.8 35 68.6
DCAR_017505 Daucus carota HOM05D005397 ORTHO05D006493 4.5e-07 57.4 35 74.3
Eucgr.F01622 Eucalyptus grandis HOM05D005397 ORTHO05D006493 4.5e-07 57.4 34 79.4
Glyma.14G216700 Glycine max HOM05D005397 ORTHO05D006493 4.5e-07 57.4 35 68.6
QL02p010766 Quercus lobata HOM05D005397 ORTHO05D006493 4.5e-07 57.4 35 68.6
EL10Ac1g00550 Beta vulgaris HOM05D005397 ORTHO05D006493 5.9e-07 57.0 35 71.4
TPR.G40295 Trifolium pratense HOM05D005397 ORTHO05D006493 5.9e-07 57.0 35 71.4
CsaV3_2G029290 Cucumis sativus L. HOM05D005397 ORTHO05D006493 7.7e-07 56.6 33 78.8
Glyma.17G255300 Glycine max HOM05D005397 ORTHO05D006493 7.7e-07 56.6 35 65.7
Solyc04g081070.3 Solanum lycopersicum HOM05D005397 ORTHO05D006493 7.7e-07 56.6 35 71.4
PGSC0003DMG400003765 Solanum tuberosum HOM05D005397 ORTHO05D006493 7.7e-07 56.6 35 71.4
ATR0149G027 Amborella trichopoda HOM05D005397 ORTHO05D006493 1.0e-06 56.2 35 74.3
CAN.G851.6 Capsicum annuum HOM05D005397 ORTHO05D006493 1.0e-06 56.2 34 73.5
FAN20G2387 Fragaria x ananassa HOM05D005397 ORTHO05D006493 1.0e-06 56.2 35 68.6
CDE05G0602 Ceratophyllum demersum HOM05D005397 ORTHO05D006493 1.3e-06 55.8 35 68.6
ClCG08G014500 Citrullus lanatus HOM05D005397 ORTHO05D006493 1.3e-06 55.8 33 78.8
FAN15G0228 Fragaria x ananassa HOM05D005397 ORTHO05D006493 1.3e-06 55.8 35 68.6
Sopen04g034690 Solanum pennellii HOM05D005397 ORTHO05D006493 1.3e-06 55.8 35 71.4
SalBow7G0110 Salvia bowleyana HOM05D005397 ORTHO05D006493 1.7e-06 55.5 35 74.3
TWI12G0995 Tripterygium wilfordii HOM05D005397 ORTHO05D006493 2.9e-06 54.7 35 71.4
MELO3C010989.2 Cucumis melo HOM05D005397 ORTHO05D006493 3.8e-06 54.3 35 71.4
VMungo0647G1731 Vigna mungo HOM05D005397 ORTHO05D006493 3.8e-06 54.3 35 68.6
Cpa.g.sc140.23 Carica papaya HOM05D005397 ORTHO05D006493 5.0e-06 53.9 35 65.7
DCAR_013850 Daucus carota HOM05D005397 ORTHO05D006493 5.0e-06 53.9 35 71.4
ECA247G0112 Erigeron canadensis HOM05D005397 ORTHO05D006493 5.0e-06 53.9 34 67.6
Sed0023445 Sechium edule HOM05D005397 ORTHO05D006493 5.0e-06 53.9 33 75.8
Medtr1g023310 Medicago truncatula HOM05D005397 ORTHO05D006493 6.5e-06 53.5 35 68.6
Os02g0122400 Oryza sativa ssp. japonica HOM05D005397 ORTHO05D006493 8.5e-06 53.1 35 62.9


User provided reference genes

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