Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 3.2e-81 305.1 159 100.0
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 3.1e-68 261.9 156 85.9
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 4.1e-68 261.5 156 85.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 1.6e-67 259.6 155 83.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 5.9e-67 257.7 155 83.2
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.0e-66 256.9 155 83.2
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 2.2e-66 255.8 155 82.6
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 5.0e-66 254.6 155 82.6
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 5.0e-66 254.6 156 82.1
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 6.5e-66 254.2 155 83.2
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 1.5e-65 253.1 155 81.9
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 5.5e-65 251.1 155 81.9
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 5.5e-65 251.1 155 81.3
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 7.2e-65 250.8 155 83.2
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 1.2e-64 250.0 155 81.9
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.1e-64 249.2 155 79.4
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 4.7e-64 248.1 154 78.6
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 4.7e-64 248.1 155 82.6
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 6.1e-64 247.7 155 80.0
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 8.0e-64 247.3 155 81.3
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.0e-63 246.9 155 80.0
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.4e-63 246.5 155 80.6
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 1.8e-63 246.1 154 81.2
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.8e-63 246.1 155 79.4
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 2.3e-63 245.7 155 78.7
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 2.3e-63 245.7 155 78.7
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.3e-63 245.7 155 79.4
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 3.0e-63 245.4 155 78.7
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 3.0e-63 245.4 155 80.0
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 4.0e-63 245.0 159 80.5
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 8.8e-63 243.8 156 78.2
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 8.8e-63 243.8 155 79.4
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 1.5e-62 243.0 155 78.7
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 1.5e-62 243.0 155 77.4
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.5e-62 243.0 155 78.1
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.5e-62 243.0 154 78.6
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 2.6e-62 242.3 155 77.4
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.6e-62 242.3 156 78.8
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 3.4e-62 241.9 154 77.9
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 5.7e-62 241.1 155 77.4
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 5.7e-62 241.1 155 77.4
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 7.5e-62 240.7 155 77.4
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 7.5e-62 240.7 183 68.9
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 9.8e-62 240.4 155 76.8
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 1.3e-61 240.0 155 77.4
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.3e-61 240.0 155 76.1
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.3e-61 240.0 178 71.3
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 2.2e-61 239.2 155 74.8
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 2.8e-61 238.8 155 76.8
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 4.9e-61 238.0 155 76.1
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 6.3e-61 237.7 155 76.8
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.1e-60 236.9 155 77.4
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.1e-60 236.9 155 77.4
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 1.4e-60 236.5 155 76.1
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.4e-60 236.5 160 76.2
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 2.4e-60 235.7 153 77.1
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 2.4e-60 235.7 159 75.5
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 3.1e-60 235.3 155 75.5
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 5.4e-60 234.6 165 74.5
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 5.4e-60 234.6 155 76.1
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 5.4e-60 234.6 159 74.8
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 2.0e-59 232.6 159 74.2
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 5.9e-59 231.1 159 72.3
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 7.7e-59 230.7 155 75.5
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 7.7e-59 230.7 159 73.0
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 7.7e-59 230.7 163 72.4
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.0e-58 230.3 153 75.8
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.0e-58 230.3 159 74.8
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.7e-58 229.6 159 74.8
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 2.9e-58 228.8 158 74.1
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 1.1e-57 226.9 155 73.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.5e-57 226.5 155 71.6
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 7.2e-57 224.2 157 72.0
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 3.6e-56 221.9 154 69.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 2.3e-55 219.2 155 68.4
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.0e-54 216.1 155 70.3
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.0e-54 216.1 158 73.4
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 2.0e-54 216.1 155 72.9
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 8.3e-53 210.7 156 70.5
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.4e-52 209.9 171 62.6
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.4e-52 209.9 155 72.3
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 4.1e-52 208.4 158 70.9
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.5e-49 199.9 126 77.8
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.5e-46 189.9 105 91.4
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 4.4e-46 188.3 129 72.9
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 1.9e-44 183.0 154 57.1
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 4.1e-44 181.8 154 61.0
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 9.5e-41 170.6 155 58.7
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 4.4e-38 161.8 125 67.2
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 9.8e-38 160.6 106 79.2
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.9e-36 156.4 96 83.3
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.9e-36 156.4 96 83.3
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.1e-28 130.6 95 71.6
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.2e-28 129.0 79 81.0
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.2e-28 129.0 79 81.0
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 7.8e-27 124.4 155 49.0
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 1.2e-19 100.5 59 79.7
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 8.1e-16 87.8 139 41.0
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.7e-13 80.1 151 37.1
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 6.4e-13 78.2 60 53.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 1.2e-11 73.9 150 36.7
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 5.6e-09 65.1 34 91.2
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.4e-06 55.8 42 64.3


User provided reference genes

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