Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C72T9 Lonicera japonica HOM05D002412 ORTHO05D002516 4.1e-79 298.1 166 100.0
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.8e-25 118.2 168 49.4
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 3.5e-22 109.0 131 56.5
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.3e-21 106.3 179 48.6
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 3.9e-21 105.5 185 49.2
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.5e-20 102.8 174 47.1
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 2.2e-19 99.8 177 44.6
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 2.8e-19 99.4 167 43.1
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.8e-19 99.4 132 51.5
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.4e-18 97.1 167 44.9
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 2.4e-18 96.3 178 44.4
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.9e-18 94.7 135 47.4
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.5e-17 93.6 171 42.7
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.5e-17 93.6 167 45.5
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 4.5e-17 92.0 177 45.2
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.9e-17 91.7 123 51.2
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 7.7e-17 91.3 211 39.3
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 1.3e-16 90.5 177 42.4
Dinv39215 Davidia involucrata HOM05D002412 ORTHO05D002516 1.7e-16 90.1 85 60.0
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 2.9e-16 89.4 124 50.0
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.8e-16 89.0 173 41.6
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.5e-16 88.2 169 42.0
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 6.5e-16 88.2 164 43.9
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.4e-15 87.0 145 42.8
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.5e-15 86.3 175 41.7
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 5.5e-15 85.1 175 41.1
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.6e-14 82.4 112 50.0
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 6.1e-14 81.6 143 44.1
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 7.9e-14 81.3 178 41.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.0e-13 80.9 158 46.2
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.0e-13 80.9 123 44.7
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 1.0e-13 80.9 123 44.7
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 1.4e-13 80.5 140 42.9
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 1.4e-13 80.5 115 50.4
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.4e-13 80.5 178 41.6
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 2.3e-13 79.7 125 47.2
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 3.0e-13 79.3 168 40.5
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 5.1e-13 78.6 161 42.2
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.7e-13 78.2 114 44.7
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 8.8e-13 77.8 174 39.7
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 1.1e-12 77.4 125 42.4
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.1e-12 77.4 185 42.2
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 1.5e-12 77.0 116 44.0
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 1.5e-12 77.0 169 43.8
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.5e-12 76.3 122 46.7
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.5e-12 76.3 171 38.0
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 2.5e-12 76.3 126 40.5
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 2.5e-12 76.3 174 40.2
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.3e-12 75.9 168 38.1
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 3.3e-12 75.9 162 40.7
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.3e-12 75.9 139 44.6
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 3.3e-12 75.9 139 44.6
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 3.3e-12 75.9 176 42.6
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.3e-12 75.5 187 39.0
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 5.7e-12 75.1 169 40.8
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 7.4e-12 74.7 150 40.0
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 7.4e-12 74.7 168 41.7
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.4e-12 74.7 172 38.4
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 9.7e-12 74.3 173 38.7
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.7e-11 73.6 172 37.2
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.7e-11 73.6 119 42.0
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 2.2e-11 73.2 109 48.6
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 2.8e-11 72.8 176 37.5
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 3.7e-11 72.4 162 36.4
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 3.7e-11 72.4 183 36.6
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 6.3e-11 71.6 174 37.4
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 6.3e-11 71.6 123 47.2
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 8.2e-11 71.2 135 43.7
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.2e-11 71.2 186 38.7
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.2e-11 71.2 188 36.7
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 1.1e-10 70.9 167 41.9
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.1e-10 70.9 135 38.5
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.1e-10 70.9 178 38.2
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.4e-10 70.5 120 41.7
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.4e-10 70.5 120 41.7
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 1.4e-10 70.5 168 32.1
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.4e-10 70.5 171 38.0
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 2.4e-10 69.7 134 41.8
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 3.1e-10 69.3 169 37.3
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 4.1e-10 68.9 180 36.1
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 9.1e-10 67.8 174 35.1
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 9.1e-10 67.8 172 35.5
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.1e-10 67.8 166 39.2
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.1e-10 67.8 166 39.2
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 9.1e-10 67.8 166 39.2
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 9.1e-10 67.8 168 38.7
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 2.6e-09 66.2 168 32.7
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.6e-09 66.2 171 36.8
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 2.6e-09 66.2 145 40.7
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 3.4e-09 65.9 204 34.3
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 5.9e-09 65.1 153 38.6
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 5.9e-09 65.1 123 36.6
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 1.3e-08 63.9 168 33.3
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.3e-08 63.9 184 38.0
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 1.7e-08 63.5 121 48.8
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.7e-08 63.5 118 41.5
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.7e-08 63.5 104 41.3
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 2.2e-08 63.2 192 40.6
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.2e-08 63.2 121 42.1
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 2.2e-08 63.2 162 34.0
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 2.9e-08 62.8 150 34.7
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.9e-08 62.8 155 37.4
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 3.8e-08 62.4 156 36.5
DCAR_029176 Daucus carota HOM05D002412 ORTHO05D002516 3.8e-08 62.4 100 42.0
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 3.8e-08 62.4 180 35.0
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 3.8e-08 62.4 136 39.7
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 3.8e-08 62.4 121 41.3
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 3.8e-08 62.4 172 34.3
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 3.8e-08 62.4 112 41.1
CiPaw.05G019200 Carya illinoinensis HOM05D002412 ORTHO05D002516 5.0e-08 62.0 122 39.3
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 5.0e-08 62.0 176 35.2
Cpa.g.sc106.37 Carica papaya HOM05D002412 ORTHO05D002516 6.5e-08 61.6 135 37.0
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 6.5e-08 61.6 149 37.6
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 6.5e-08 61.6 149 37.6
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 8.5e-08 61.2 158 33.5
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 8.5e-08 61.2 178 33.1
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.1e-07 60.8 180 43.9
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 1.4e-07 60.5 155 32.9
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 1.4e-07 60.5 172 35.5
unitig_744.g24125 Utricularia gibba HOM05D002412 ORTHO05D002516 1.9e-07 60.1 128 42.2
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.5e-07 59.7 162 37.0
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 2.5e-07 59.7 146 41.1
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 3.2e-07 59.3 151 34.4
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 3.2e-07 59.3 114 42.1
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 3.2e-07 59.3 171 39.2
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 4.2e-07 58.9 108 40.7
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 4.2e-07 58.9 158 32.9
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 5.5e-07 58.5 152 33.6
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 5.5e-07 58.5 152 34.9
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 5.5e-07 58.5 135 35.6
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 7.2e-07 58.2 172 33.7
HPP92_020402 Vanilla planifolia HOM05D002412 ORTHO05D002516 7.2e-07 58.2 113 39.8
unitig_21.g20629 Utricularia gibba HOM05D002412 ORTHO05D002516 9.4e-07 57.8 145 38.6
MSTRG.16674 Avicennia marina HOM05D002412 ORTHO05D002516 1.2e-06 57.4 162 39.5
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 1.2e-06 57.4 163 35.6
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.6e-06 57.0 183 33.9
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 2.1e-06 56.6 171 28.1
PSO675G0250 Papaver somniferum HOM05D002412 ORTHO05D002516 2.1e-06 56.6 72 48.6
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 2.1e-06 56.6 162 32.7
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 2.7e-06 56.2 139 38.8
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 3.6e-06 55.8 166 31.9
SGA_v2.0_scaffold238G43955 Striga asiatica HOM05D002412 ORTHO05D002516 3.6e-06 55.8 118 37.3
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 4.7e-06 55.5 153 35.9
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 6.1e-06 55.1 176 34.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 7.9e-06 54.7 156 35.9
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 7.9e-06 54.7 176 34.1
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 7.9e-06 54.7 112 35.7


User provided reference genes

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