Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C723T2 Lonicera japonica HOM05D000177 ORTHO05D037972 1.7e-85 319.3 167 100.0
Dinv44774 Davidia involucrata HOM05D000177 ORTHO05D003091 4.3e-36 155.2 170 57.1
TAR625G0270 Trochodendron aralioides HOM05D000177 ORTHO05D003091 1.2e-30 137.1 166 51.8
CSS0003423 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D003091 5.9e-25 118.2 162 50.0
Nn1g05353 Nelumbo nucifera HOM05D000177 ORTHO05D003091 1.4e-23 113.6 163 45.4
Hma1.2p1_0120F.1_g057400 Hydrangea macrophylla HOM05D000177 ORTHO05D003091 1.6e-22 110.2 160 46.9
Nn5g30111 Nelumbo nucifera HOM05D000177 ORTHO05D003091 2.7e-22 109.4 183 42.1
Manes.02G152800 Manihot esculenta HOM05D000177 ORTHO05D003091 1.1e-20 104.0 171 41.5
TAR628G0598 Trochodendron aralioides HOM05D000177 ORTHO05D003091 2.6e-20 102.8 130 50.0
Haze_22266 Corylus avellana HOM05D000177 ORTHO05D003091 1.7e-19 100.1 135 51.9
Cfa013634 Carpinus fangiana HOM05D000177 ORTHO05D003091 4.8e-19 98.6 135 51.1
Rhsim06G0082200 Rhododendron simsii HOM05D000177 ORTHO05D003091 1.1e-18 97.4 168 42.3
CiPaw.07G180200 Carya illinoinensis HOM05D000177 ORTHO05D003091 2.4e-18 96.3 168 43.5
Manes.18G067600 Manihot esculenta HOM05D000177 ORTHO05D003091 1.3e-16 90.5 172 40.1
MBI05_g19347_MAGBIO Magnolia biondii HOM05D000177 ORTHO05D003091 1.7e-16 90.1 166 42.8
Nitab4.5_0000232g0260 Nicotiana tabacum HOM05D000177 ORTHO05D003091 6.5e-16 88.2 172 41.9
Solyc04g074130.3 Solanum lycopersicum HOM05D000177 ORTHO05D003091 6.5e-16 88.2 162 42.0
TWI12G0382 Tripterygium wilfordii HOM05D000177 ORTHO05D003091 8.5e-16 87.8 170 41.8
QL12p036770 Quercus lobata HOM05D000177 ORTHO05D003091 1.1e-15 87.4 171 41.5
PGSC0003DMG400006405 Solanum tuberosum HOM05D000177 ORTHO05D003091 1.1e-15 87.4 163 42.3
Aqoxy6G00788 Aquilegia oxysepala HOM05D000177 ORTHO05D003091 1.5e-15 87.0 163 41.7
Ciclev10001196m.g Citrus clementina HOM05D000177 ORTHO05D003091 3.2e-15 85.9 167 38.9
Sopen04g029310 Solanum pennellii HOM05D000177 ORTHO05D003091 3.2e-15 85.9 162 42.0
Nitab4.5_0005777g0030 Nicotiana tabacum HOM05D000177 ORTHO05D003091 7.2e-15 84.7 173 41.6
ATR0782G029 Amborella trichopoda HOM05D000177 ORTHO05D003091 2.7e-14 82.8 143 42.0
Oeu012926.1 Olea europaea HOM05D000177 ORTHO05D003091 3.6e-14 82.4 169 41.4
Oeu012927.1 Olea europaea HOM05D000177 ORTHO05D003091 3.6e-14 82.4 169 41.4
Hma1.2p1_0237F.1_g099470 Hydrangea macrophylla HOM05D000177 ORTHO05D003091 4.7e-14 82.0 169 40.2
Potri.005G165200 Populus trichocarpa HOM05D000177 ORTHO05D003091 4.7e-14 82.0 177 39.0
CDE04G0948 Ceratophyllum demersum HOM05D000177 ORTHO05D003091 1.0e-13 80.9 159 37.1
Lsat_1_v5_gn_9_41660 Lactuca sativa HOM05D000177 ORTHO05D003091 1.0e-13 80.9 89 62.9
MSTRG.24459 Avicennia marina HOM05D000177 ORTHO05D003091 2.3e-13 79.7 130 45.4
Prupe.1G516900 Prunus persica HOM05D000177 ORTHO05D003091 4.0e-13 79.0 130 46.2
MD08G1182700 Malus domestica HOM05D000177 ORTHO05D003091 1.2e-12 77.4 155 42.6
Atru.chr13.1190 Acer truncatum HOM05D000177 ORTHO05D003091 2.0e-12 76.6 165 38.2
Sabra05G0124500 Salix brachista HOM05D000177 ORTHO05D003091 2.0e-12 76.6 171 36.8
Hma1.2p1_0308F.1_g120230 Hydrangea macrophylla HOM05D000177 ORTHO05D003091 2.6e-12 76.3 163 38.7
Cc10_g07220 Coffea canephora HOM05D000177 ORTHO05D003091 4.4e-12 75.5 152 37.5
Dinv21903 Davidia involucrata HOM05D000177 ORTHO05D003091 4.4e-12 75.5 164 35.4
Aqoxy5G01904 Aquilegia oxysepala HOM05D000177 ORTHO05D003091 5.7e-12 75.1 173 38.7
MD15G1318200 Malus domestica HOM05D000177 ORTHO05D003091 1.3e-11 73.9 164 37.8
Eucgr.B00021 Eucalyptus grandis HOM05D000177 ORTHO05D003091 1.7e-11 73.6 174 37.9
AT5G64970 Arabidopsis thaliana HOM05D000177 ORTHO05D003091 2.8e-11 72.8 165 35.2
CAN.G101.23 Capsicum annuum HOM05D000177 ORTHO05D003091 2.8e-11 72.8 167 36.5
Sp2g28060 Schrenkiella parvula HOM05D000177 ORTHO05D003091 2.8e-11 72.8 170 35.3
CSS0019485 Camellia sinensis var. sinensis HOM05D000177 ORTHO05D003091 3.7e-11 72.4 169 35.5
CiPaw.03G142300 Carya illinoinensis HOM05D000177 ORTHO05D003091 6.3e-11 71.6 166 38.6
MELO3C007754.2 Cucumis melo HOM05D000177 ORTHO05D003091 6.3e-11 71.6 136 43.4
MELO3C011024.2 Cucumis melo HOM05D000177 ORTHO05D003091 6.3e-11 71.6 137 40.9
CsaV3_6G045410 Cucumis sativus L. HOM05D000177 ORTHO05D003091 6.3e-11 71.6 137 43.8
Duzib147G0569 Durio zibethinus HOM05D000177 ORTHO05D003091 1.1e-10 70.9 142 43.7
FAN04G1959 Fragaria x ananassa HOM05D000177 ORTHO05D003091 2.4e-10 69.7 131 42.7
Actinidia27186 Actinidia chinensis HOM05D000177 ORTHO05D037972 3.1e-10 69.3 92 52.2
TWI53G1530 Tripterygium wilfordii HOM05D000177 ORTHO05D003091 3.1e-10 69.3 136 39.7
Actinidia20015 Actinidia chinensis HOM05D000177 ORTHO05D003091 4.1e-10 68.9 165 35.8
Cpa.g.c31610.1 Carica papaya HOM05D000177 ORTHO05D003091 4.1e-10 68.9 135 39.3
Actinidia28861 Actinidia chinensis HOM05D000177 ORTHO05D003091 5.3e-10 68.6 167 34.7
ClCG01G018750 Citrullus lanatus HOM05D000177 ORTHO05D003091 5.3e-10 68.6 138 43.5
Lsat_1_v5_gn_5_43700 Lactuca sativa HOM05D000177 ORTHO05D003091 5.3e-10 68.6 162 38.9
MD01G1030900 Malus domestica HOM05D000177 ORTHO05D003091 5.3e-10 68.6 150 41.3
PSO781G0004 Papaver somniferum HOM05D000177 ORTHO05D003091 5.3e-10 68.6 141 44.7
Carub.0008s2580 Capsella rubella HOM05D000177 ORTHO05D003091 7.0e-10 68.2 166 34.3
Cc07_g15150 Coffea canephora HOM05D000177 ORTHO05D003091 9.1e-10 67.8 183 35.5
Rhsim10G0163200 Rhododendron simsii HOM05D000177 ORTHO05D003091 9.1e-10 67.8 167 37.7
Thecc.01G100000 Theobroma cacao HOM05D000177 ORTHO05D003091 9.1e-10 67.8 160 39.4
AL8G42470 Arabidopsis lyrata HOM05D000177 ORTHO05D003091 1.2e-09 67.4 165 33.9
Duzib041G0382 Durio zibethinus HOM05D000177 ORTHO05D003091 1.6e-09 67.0 160 37.5
SGA_v2.0_scaffold84G26533 Striga asiatica HOM05D000177 ORTHO05D003091 1.6e-09 67.0 134 38.8
Thecc.08G106900 Theobroma cacao HOM05D000177 ORTHO05D003091 1.6e-09 67.0 129 42.6
CsaV3_2G029660 Cucumis sativus L. HOM05D000177 ORTHO05D003091 2.0e-09 66.6 135 39.3
Prupe.6G187500 Prunus persica HOM05D000177 ORTHO05D003091 2.0e-09 66.6 174 36.2
arahy.Tifrunner.gnm1.ann1.4K0ELJ Arachis hypogaea HOM05D000177 ORTHO05D003091 5.9e-09 65.1 143 41.3
CANSAT25G3816 Cannabis sativa HOM05D000177 ORTHO05D003091 5.9e-09 65.1 135 39.3
CARHR293800 Cardamine hirsuta HOM05D000177 ORTHO05D003091 5.9e-09 65.1 161 32.3
Migut.N02897 Erythranthe guttata HOM05D000177 ORTHO05D003091 5.9e-09 65.1 151 38.4
HanXRQChr15g0490041 Helianthus annuus HOM05D000177 ORTHO05D003091 5.9e-09 65.1 135 42.2
Sed0019110 Sechium edule HOM05D000177 ORTHO05D003091 5.9e-09 65.1 131 41.2
CANSAT01G2863 Cannabis sativa HOM05D000177 ORTHO05D003091 7.7e-09 64.7 147 42.9
ClCG08G011080 Citrullus lanatus HOM05D000177 ORTHO05D003091 7.7e-09 64.7 135 40.0
Potri.007G093300 Populus trichocarpa HOM05D000177 ORTHO05D003091 7.7e-09 64.7 157 36.9
SalBow8G4402 Salvia bowleyana HOM05D000177 ORTHO05D003091 7.7e-09 64.7 163 36.8
FAN18G1650 Fragaria x ananassa HOM05D000177 ORTHO05D003091 1.0e-08 64.3 131 38.9
Gorai.009G237100 Gossypium raimondii HOM05D000177 ORTHO05D003091 1.3e-08 63.9 130 45.4
PGR004G0410 Punica granatum HOM05D000177 ORTHO05D003091 1.3e-08 63.9 138 42.0
Sed0024240 Sechium edule HOM05D000177 ORTHO05D003091 1.3e-08 63.9 132 43.9
BraA06t26111Z Brassica rapa HOM05D000177 ORTHO05D003091 2.9e-08 62.8 162 34.6
Cfa002655 Carpinus fangiana HOM05D000177 ORTHO05D003091 2.9e-08 62.8 171 36.8
Haze_24925 Corylus avellana HOM05D000177 ORTHO05D003091 2.9e-08 62.8 171 38.0
Eucgr.I00436 Eucalyptus grandis HOM05D000177 ORTHO05D003091 2.9e-08 62.8 146 35.6
FvH4_5g37340 Fragaria vesca HOM05D000177 ORTHO05D003091 2.9e-08 62.8 131 38.2
FAN13G0354 Fragaria x ananassa HOM05D000177 ORTHO05D003091 3.8e-08 62.4 130 40.8
Gohir.D05G229100 Gossypium hirsutum HOM05D000177 ORTHO05D003091 3.8e-08 62.4 130 43.1
Aa31LG1G16940 Aethionema arabicum HOM05D000177 ORTHO05D003091 5.0e-08 62.0 160 33.8
Psat7g054560 Pisum sativum HOM05D000177 ORTHO05D003091 5.0e-08 62.0 139 36.7
arahy.Tifrunner.gnm1.ann1.9SU5ES Arachis hypogaea HOM05D000177 ORTHO05D003091 6.5e-08 61.6 145 39.3
COL.COLO4_16400 Corchorus olitorius HOM05D000177 ORTHO05D003091 6.5e-08 61.6 129 39.5
ECA232G4675 Erigeron canadensis HOM05D000214 ORTHO05D003091 6.5e-08 61.6 92 46.7
RcHm_v2.0_Chr2g0113451 Rosa chinensis HOM05D000177 ORTHO05D003091 6.5e-08 61.6 135 40.7
RcHm_v2.0_Chr7g0238991 Rosa chinensis HOM05D000177 ORTHO05D003091 6.5e-08 61.6 132 40.2
Sabra07G0077300 Salix brachista HOM05D000177 ORTHO05D003091 6.5e-08 61.6 133 39.1
SalBow3G4170 Salvia bowleyana HOM05D000177 ORTHO05D003091 6.5e-08 61.6 161 36.6
Hund16290 Selenicereus undatus HOM05D000177 ORTHO05D003091 6.5e-08 61.6 125 42.4
Duzib187G1254 Durio zibethinus HOM05D000177 ORTHO05D003091 8.5e-08 61.2 136 39.0
Manes.12G134400 Manihot esculenta HOM05D000177 ORTHO05D003091 1.1e-07 60.8 159 39.0
PSO210G0932 Papaver somniferum HOM05D000177 ORTHO05D003091 1.1e-07 60.8 175 36.6
A06p31770 Brassica napus HOM05D000177 ORTHO05D003091 1.5e-07 60.5 162 34.6
Gohir.A05G226400 Gossypium hirsutum HOM05D000177 ORTHO05D003091 1.9e-07 60.1 130 43.1
Sc26g0000080 Simmondsia chinensis HOM05D000177 ORTHO05D003091 2.5e-07 59.7 149 36.2
TPR.G6211 Trifolium pratense HOM05D000177 ORTHO05D003091 3.2e-07 59.3 139 38.1
BolC3t18381H Brassica oleracea HOM05D000177 ORTHO05D003091 4.2e-07 58.9 160 33.1
AUR62002004 Chenopodium quinoa HOM05D000177 ORTHO05D003091 4.2e-07 58.9 128 42.2
Ca_15249_v3 Cicer arietinum L. HOM05D000177 ORTHO05D003091 4.2e-07 58.9 142 36.6
Gorai.003G039200 Gossypium raimondii HOM05D000177 ORTHO05D003091 4.2e-07 58.9 133 41.4
PSO447G0135 Papaver somniferum HOM05D000177 ORTHO05D003091 4.2e-07 58.9 172 40.1
AUR62003798 Chenopodium quinoa HOM05D000177 ORTHO05D003091 5.5e-07 58.5 128 42.2
Glyma.04G102300 Glycine max HOM05D000177 ORTHO05D003091 7.2e-07 58.2 132 40.2
Glyma.06G103600 Glycine max HOM05D000177 ORTHO05D003091 9.4e-07 57.8 131 36.6
Gohir.A11G202000 Gossypium hirsutum HOM05D000177 ORTHO05D003091 9.4e-07 57.8 134 38.1
Gohir.D03G037400 Gossypium hirsutum HOM05D000177 ORTHO05D003091 9.4e-07 57.8 133 39.8
Thhalv10004276m.g Eutrema salsugineum HOM05D000177 ORTHO05D003091 1.2e-06 57.4 164 35.4
AT1G78180 Arabidopsis thaliana HOM05D000177 ORTHO05D003091 1.6e-06 57.0 166 34.3
FAN28G1287 Fragaria x ananassa HOM05D000177 ORTHO05D003091 1.6e-06 57.0 131 42.0
THA.LOC104798956 Tarenaya hassleriana HOM05D000177 ORTHO05D003091 1.6e-06 57.0 172 33.1
C03p61200 Brassica napus HOM05D000177 ORTHO05D003091 2.1e-06 56.6 160 32.5
FvH4_1g20840 Fragaria vesca HOM05D000177 ORTHO05D003091 2.1e-06 56.6 131 41.2
Gohir.A02G143000 Gossypium hirsutum HOM05D000177 ORTHO05D003091 2.1e-06 56.6 133 40.6
Sc16g0004990 Simmondsia chinensis HOM05D000177 ORTHO05D003091 2.7e-06 56.2 73 52.1
arahy.Tifrunner.gnm1.ann1.65VSLG Arachis hypogaea HOM05D000177 ORTHO05D003091 3.6e-06 55.8 86 47.7
CDE12G0872 Ceratophyllum demersum HOM05D000177 ORTHO05D003091 3.6e-06 55.8 81 44.4
Gorai.007G238100 Gossypium raimondii HOM05D000177 ORTHO05D003091 3.6e-06 55.8 134 38.1
Lj4g0024275 Lotus japonicus HOM05D000177 ORTHO05D003091 3.6e-06 55.8 138 40.6
BcaC01g02730 Brassica carinata HOM05D000177 ORTHO05D003091 6.1e-06 55.1 159 32.1
C02p63720 Brassica napus HOM05D000177 ORTHO05D003091 6.1e-06 55.1 133 37.6
FAN19G0952 Fragaria x ananassa HOM05D000177 ORTHO05D003091 6.1e-06 55.1 131 40.5
Phvul.009G031000 Phaseolus vulgaris HOM05D000177 ORTHO05D003091 6.1e-06 55.1 129 34.9
FAN26G0233 Fragaria x ananassa HOM05D000177 ORTHO05D003091 8.0e-06 54.7 95 49.5


User provided reference genes

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