Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.8e-196 689.1 350 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.5e-102 376.3 372 55.9
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.2e-101 374.0 357 58.3
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 8.1e-101 371.3 370 57.0
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.2e-99 367.5 370 56.8
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.2e-98 363.2 376 56.6
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.2e-98 363.2 376 56.6
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.2e-96 357.5 359 55.7
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 7.8e-96 354.8 376 55.1
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 3.0e-95 352.8 366 53.8
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 3.3e-94 349.4 370 53.8
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.4e-89 332.0 364 54.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 7.1e-89 331.6 375 52.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.1e-88 330.1 382 49.2
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.0e-87 327.8 376 51.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.0e-87 326.2 360 51.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 6.6e-87 325.1 379 51.2
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.1e-86 324.3 357 51.8
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.5e-86 323.9 370 51.1
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.3e-86 322.4 356 52.0
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.3e-86 322.4 366 51.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 7.3e-86 321.6 380 49.7
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.8e-85 318.9 385 48.8
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 8.1e-85 318.2 384 48.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.1e-85 318.2 378 49.2
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 3.1e-84 316.2 364 52.7
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.3e-84 315.5 383 48.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.2e-83 314.3 343 53.1
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.5e-83 313.9 329 55.3
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.5e-83 313.9 391 48.6
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.6e-83 313.2 383 48.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.4e-83 312.8 352 50.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.4e-83 312.8 364 51.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 3.4e-83 312.8 351 55.6
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 5.8e-83 312.0 368 51.1
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 7.6e-83 311.6 383 51.4
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.9e-82 309.7 369 51.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 3.8e-82 309.3 355 52.1
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.4e-81 306.6 364 51.1
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.2e-81 305.8 371 50.9
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 7.1e-81 305.1 371 50.9
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 7.9e-80 301.6 366 48.4
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.0e-79 301.2 370 48.9
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.3e-79 300.1 361 48.5
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.9e-79 299.3 371 49.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.9e-78 297.0 338 53.8
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 9.6e-78 294.7 371 47.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.1e-77 293.5 364 49.2
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 2.8e-77 293.1 355 47.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.4e-76 290.8 377 49.1
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.8e-76 290.4 383 47.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 3.1e-76 289.7 368 47.3
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.2e-75 287.7 387 47.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.8e-75 285.4 379 47.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.9e-74 283.1 386 45.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.1e-73 281.2 360 46.1
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.4e-73 280.8 378 46.6
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.5e-73 280.0 368 47.6
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.7e-72 276.6 363 46.0
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 3.5e-72 276.2 378 45.8
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 8.7e-71 271.6 363 46.3
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 7.4e-70 268.5 380 46.8
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.1e-69 266.9 430 40.2
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.8e-69 266.5 378 45.8
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.8e-69 266.5 361 46.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.8e-69 266.5 355 45.4
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 8.2e-69 265.0 383 43.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.4e-68 263.5 373 46.9
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.3e-68 262.3 363 45.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 6.9e-68 261.9 370 46.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.0e-67 260.4 391 45.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 4.5e-67 259.2 366 46.7
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.7e-66 257.3 364 45.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-66 257.3 368 45.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.8e-66 256.1 358 46.4
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 4.9e-66 255.8 387 43.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-65 254.6 358 46.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-65 254.2 358 46.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 9.3e-65 251.5 360 46.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.6e-64 250.8 324 45.4
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.6e-64 249.2 358 44.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-63 248.1 357 45.4
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.8e-63 247.3 366 43.4
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.7e-63 245.4 375 43.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 2.5e-62 243.4 357 40.9
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.3e-62 243.0 344 45.3
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.6e-61 240.7 364 42.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-60 238.0 344 43.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.8e-60 237.3 346 44.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 4.1e-60 236.1 376 43.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-59 234.6 344 43.3
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.9e-58 229.9 371 44.2
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 8.5e-58 228.4 345 43.8
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 3.2e-57 226.5 373 44.2
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.2e-57 226.1 434 38.0
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 5.5e-57 225.7 352 41.5
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.3e-55 220.3 392 41.8
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 5.7e-54 215.7 323 44.3
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 7.4e-54 215.3 420 39.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.2e-53 213.8 333 42.9
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.1e-52 209.9 262 49.2
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 2.0e-51 207.2 347 40.6
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.6e-51 206.8 270 47.8
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 3.4e-51 206.5 370 40.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.0e-47 194.9 233 50.6
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 8.8e-47 191.8 278 45.0
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.0e-46 190.7 183 55.2
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 9.7e-46 188.3 295 46.8
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 4.8e-45 186.0 369 37.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 7.0e-44 182.2 355 36.6
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 9.1e-44 181.8 206 48.1
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.2e-43 181.4 324 38.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 6.5e-42 175.6 363 38.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.9e-41 174.1 258 40.3
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.2e-41 173.3 202 46.5
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 6.1e-40 169.1 213 44.6
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.2e-39 166.0 193 47.2
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 9.7e-38 161.8 352 36.1
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.7e-37 161.0 357 35.6
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.8e-37 159.5 347 36.3
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.7e-35 152.1 347 34.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.8e-34 149.8 184 45.7
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-33 148.3 124 53.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.6e-32 143.3 114 64.0
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.3e-29 134.8 189 46.0
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 4.7e-24 116.3 225 44.4
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.0e-23 113.2 121 52.9
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.1e-20 102.1 220 33.6
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.5e-19 100.1 117 51.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.3e-18 97.4 169 34.9
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-17 94.0 155 34.2
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.5e-17 94.0 169 36.1
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.2e-17 92.4 169 35.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 4.7e-16 89.7 344 31.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-15 87.4 225 31.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.8e-15 85.9 155 32.3
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 5.4e-12 76.3 348 27.6
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 3.9e-10 70.1 88 40.9
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 2.5e-09 67.4 297 26.3
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.8e-07 61.2 98 42.9
vmacro16652 Vaccinium macrocarpon HOM05D001735 ORTHO05D001640 6.8e-07 59.3 95 36.8
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 8.9e-07 58.9 120 31.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-06 58.5 119 31.9
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-06 58.5 119 31.9
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-06 58.5 119 31.9
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 182 27.5
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 2.6e-06 57.4 73 45.2
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 4.4e-06 56.6 184 26.6


User provided reference genes

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