Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 3.0e-229 798.1 398 100.0
Lj4C716T9 Lonicera japonica HOM05D008167 ORTHO05D010296 2.9e-224 781.6 398 98.5
Actinidia10306 Actinidia chinensis HOM05D008167 ORTHO05D010296 5.1e-152 541.6 386 68.9
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 4.3e-151 538.5 398 67.1
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 1.3e-142 510.4 385 64.7
CiPaw.05G235800 Carya illinoinensis HOM05D008167 ORTHO05D010296 3.1e-141 505.8 393 62.8
Cfa015915 Carpinus fangiana HOM05D008167 ORTHO05D010296 7.2e-138 494.6 390 61.8
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 8.0e-137 491.1 393 61.3
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 2.7e-129 466.1 390 60.3
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 1.4e-125 453.8 395 56.7
Prupe.1G513100 Prunus persica HOM05D008167 ORTHO05D010296 2.4e-125 453.0 395 59.0
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 7.0e-125 451.4 392 57.7
Gorai.002G219300 Gossypium raimondii HOM05D008167 ORTHO05D010296 1.2e-124 450.7 394 56.6
Aqoxy6G00583 Aquilegia oxysepala HOM05D008167 ORTHO05D010296 7.7e-124 448.0 400 58.8
COL.COLO4_16444 Corchorus olitorius HOM05D008167 ORTHO05D010296 1.7e-123 446.8 392 55.9
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 2.5e-122 443.0 400 56.0
TWI56G0729 Tripterygium wilfordii HOM05D008167 ORTHO05D010296 3.2e-122 442.6 390 57.4
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 2.7e-121 439.5 401 55.9
RcHm_v2.0_Chr7g0239831 Rosa chinensis HOM05D008167 ORTHO05D010296 1.5e-119 433.7 398 56.3
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 4.4e-119 432.2 383 57.4
Duzib093G0044 Durio zibethinus HOM05D008167 ORTHO05D010296 4.4e-119 432.2 369 58.3
Gohir.D01G176900 Gossypium hirsutum HOM05D008167 ORTHO05D010296 5.7e-119 431.8 360 58.9
FvH4_5g37850 Fragaria vesca HOM05D008167 ORTHO05D010296 2.8e-118 429.5 390 56.9
Cpa.g.sc66.82 Carica papaya HOM05D008167 ORTHO05D010296 1.4e-117 427.2 356 58.4
FAN08G3120 Fragaria x ananassa HOM05D008167 ORTHO05D010296 2.4e-117 426.4 390 56.2
MBI02_g36661_MAGBIO Magnolia biondii HOM05D008167 ORTHO05D010296 4.1e-117 425.6 391 55.0
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 4.1e-117 425.6 386 56.2
FAN13G0369 Fragaria x ananassa HOM05D008167 ORTHO05D010296 7.0e-117 424.9 391 57.0
FAN04G1438 Fragaria x ananassa HOM05D008167 ORTHO05D010296 8.6e-115 417.9 391 56.5
Gohir.A01G186400 Gossypium hirsutum HOM05D008167 ORTHO05D010296 7.2e-114 414.8 375 56.0
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 2.8e-113 412.9 375 54.9
Lalb_Chr01g0013571 Lupinus albus HOM05D008167 ORTHO05D010296 1.4e-112 410.6 385 53.5
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 4.0e-112 409.1 352 57.7
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 2.0e-108 396.7 384 52.6
FAN18G0166 Fragaria x ananassa HOM05D008167 ORTHO05D010296 3.9e-107 392.5 349 58.2
Medtr8g020400 Medicago truncatula HOM05D008167 ORTHO05D010296 3.9e-107 392.5 350 57.1
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 1.5e-106 390.6 279 67.4
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 1.9e-106 390.2 386 53.9
DCAR_008714 Daucus carota HOM05D008167 ORTHO05D010296 2.5e-106 389.8 310 62.6
arahy.Tifrunner.gnm1.ann1.DD9M5F Arachis hypogaea HOM05D008167 ORTHO05D010296 1.6e-105 387.1 438 47.5
CANSAT25G1054 Cannabis sativa HOM05D008167 ORTHO05D010296 2.1e-105 386.7 356 55.6
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 8.9e-104 381.3 382 51.3
Atru.chr13.1254 Acer truncatum HOM05D008167 ORTHO05D010296 3.2e-101 372.9 298 61.1
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 1.1e-98 364.4 389 52.2
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 1.9e-98 363.6 373 49.3
MD15G1365100 Malus domestica HOM05D008167 ORTHO05D010296 2.0e-95 353.6 306 57.8
vmacro21234 Vaccinium macrocarpon HOM05D008167 ORTHO05D010296 5.8e-95 352.1 298 61.4
Sabra02G0073900 Salix brachista HOM05D008167 ORTHO05D010296 9.8e-95 351.3 380 51.1
ECA232G3852 Erigeron canadensis HOM05D008167 ORTHO05D010296 1.1e-90 337.8 270 62.2
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 6.2e-81 305.4 314 50.0
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 2.0e-79 300.4 384 44.3
Ca_23370_v3 Cicer arietinum L. HOM05D008167 ORTHO05D010296 9.9e-79 298.1 269 53.9
Psat4g183040 Pisum sativum HOM05D008167 ORTHO05D010296 2.3e-75 287.0 270 54.1
Eucgr.F02444 Eucalyptus grandis HOM05D008167 ORTHO05D010296 1.4e-72 277.7 264 53.8
ATR0564G341 Amborella trichopoda HOM05D008167 ORTHO05D010296 2.4e-64 250.4 239 51.9
Glyma.16G006900 Glycine max HOM05D008167 ORTHO05D010296 3.4e-47 193.4 279 41.2
Haze_17026 Corylus avellana HOM05D000028 ORTHO05D010296 2.2e-46 190.7 169 56.2
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.4e-45 188.0 393 33.3
SEGI_30626 Sequoiadendron giganteum HOM05D008167 ORTHO05D010296 1.6e-44 184.5 255 40.4
vmacro21235 Vaccinium macrocarpon HOM05D008167 ORTHO05D010296 2.8e-41 173.7 122 69.7
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 5.3e-40 169.5 111 72.1
Haze_00155 Corylus avellana HOM05D008167 ORTHO05D010296 1.5e-39 167.9 112 69.6
Haze_15967 Corylus avellana HOM05D008167 ORTHO05D010296 7.4e-34 149.1 127 57.5
Haze_08650 Corylus avellana HOM05D008167 ORTHO05D010296 1.1e-24 118.6 82 64.6
Glyma.07G037500 Glycine max HOM05D008167 ORTHO05D010296 7.7e-15 85.9 107 45.8
MD15G1365000 Malus domestica HOM05D008167 ORTHO05D010296 7.7e-15 85.9 81 58.0
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 2.0e-10 71.2 339 23.3
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 4.4e-10 70.1 369 24.1
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.7e-09 68.2 395 22.5
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 4.8e-09 66.6 343 22.7
Medtr8g020410 Medicago truncatula HOM05D008167 ORTHO05D010296 1.1e-08 65.5 49 55.1
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.4e-08 64.3 390 22.1
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 7.0e-08 62.8 344 23.0
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 2.0e-07 61.2 341 22.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 3.5e-07 60.5 342 21.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 5.9e-07 59.7 342 23.4
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 7.7e-07 59.3 342 22.5
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 7.7e-07 59.3 346 23.1
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.3e-06 58.5 313 22.0
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 2.2e-06 57.8 345 21.7
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 2.2e-06 57.8 343 22.7
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 2.9e-06 57.4 412 21.8
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 3.8e-06 57.0 342 21.9
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 8.5e-06 55.8 336 23.8


User provided reference genes

Program Settings