Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C718T3 Lonicera japonica HOM05D000108 ORTHO05D001407 4.4e-122 441.4 244 100.0
Lj4C737G6 Lonicera japonica HOM05D000076 ORTHO05D003143 2.4e-96 355.9 226 90.3
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 3.7e-36 156.0 210 50.0
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 4.5e-34 149.1 221 43.9
Dinv42613 Davidia involucrata HOM05D000108 ORTHO05D001407 5.9e-34 148.7 225 47.1
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 6.6e-33 145.2 231 44.6
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 6.6e-33 145.2 228 43.4
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 8.6e-33 144.8 202 48.5
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 1.9e-32 143.7 216 45.8
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 1.9e-32 143.7 235 43.0
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.5e-32 141.4 219 43.8
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 1.0e-30 137.9 219 43.4
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 1.0e-30 137.9 227 43.6
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 1.4e-30 137.5 244 42.6
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 1.4e-30 137.5 216 44.9
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.4e-30 137.5 214 43.0
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 4.0e-30 136.0 210 44.8
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 5.2e-30 135.6 241 42.3
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 8.9e-30 134.8 219 43.4
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 2.0e-29 133.7 217 43.3
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 4.4e-29 132.5 200 44.5
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 5.8e-29 132.1 230 43.5
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 7.5e-29 131.7 219 42.9
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 2.2e-28 130.2 235 43.4
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 3.7e-28 129.4 218 40.4
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 4.9e-28 129.0 206 47.1
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 8.3e-28 128.3 230 40.0
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 1.1e-27 127.9 209 44.5
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 1.4e-27 127.5 224 42.0
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 2.4e-27 126.7 247 41.7
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 4.1e-27 125.9 231 40.3
COL.COLO4_35247 Corchorus olitorius HOM05D000108 ORTHO05D001407 4.1e-27 125.9 201 43.8
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 4.1e-27 125.9 199 42.7
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 7.0e-27 125.2 174 47.1
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 1.6e-26 124.0 245 39.2
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 1.6e-26 124.0 233 42.1
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 2.7e-26 123.2 207 44.4
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 3.5e-26 122.9 234 39.7
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 3.5e-26 122.9 206 44.2
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 7.8e-26 121.7 213 44.1
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 7.8e-26 121.7 234 41.5
Hund17282 Selenicereus undatus HOM05D000108 ORTHO05D001407 7.8e-26 121.7 209 41.6
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 1.0e-25 121.3 222 40.1
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 1.0e-25 121.3 204 42.2
ECA246G0586 Erigeron canadensis HOM05D000108 ORTHO05D001407 1.7e-25 120.6 211 41.7
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.7e-25 120.6 218 42.7
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 3.0e-25 119.8 235 38.7
Oeu039158.1 Olea europaea HOM05D000108 ORTHO05D010239 3.0e-25 119.8 193 46.1
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 3.0e-25 119.8 173 46.2
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 5.0e-25 119.0 208 41.8
Actinidia33570 Actinidia chinensis HOM05D000108 ORTHO05D030886 8.6e-25 118.2 146 52.7
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 8.6e-25 118.2 202 42.6
Migut.N02859 Erythranthe guttata HOM05D000108 ORTHO05D001407 1.5e-24 117.5 210 44.3
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 1.9e-24 117.1 209 39.7
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.5e-24 116.7 196 43.9
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 3.3e-24 116.3 246 35.8
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 7.3e-24 115.2 238 39.5
EL10Ac1g00999 Beta vulgaris HOM05D000108 ORTHO05D001407 2.1e-23 113.6 235 45.5
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 2.1e-23 113.6 260 37.3
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 4.7e-23 112.5 223 40.8
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 4.7e-23 112.5 235 40.4
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.4e-22 110.9 215 40.9
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 1.8e-22 110.5 213 41.3
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 2.3e-22 110.2 210 38.6
AL8G37550 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 3.1e-22 109.8 213 44.1
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 3.1e-22 109.8 197 40.1
Carub.0008s2162 Capsella rubella HOM05D000108 ORTHO05D001407 4.0e-22 109.4 209 45.0
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 4.0e-22 109.4 239 38.5
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 8.9e-22 108.2 247 36.8
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 8.9e-22 108.2 203 40.4
AT5G60930 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 1.2e-21 107.8 217 41.9
DCAR_019314 Daucus carota HOM05D000108 ORTHO05D001407 1.5e-21 107.5 204 38.7
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 1.5e-21 107.5 246 38.2
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 2.0e-21 107.1 251 35.9
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.0e-21 107.1 215 40.5
unitig_744.g24110 Utricularia gibba HOM05D000108 ORTHO05D001407 2.6e-21 106.7 191 40.3
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 7.5e-21 105.1 249 37.3
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 9.8e-21 104.8 178 43.3
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 1.3e-20 104.4 242 36.8
unitig_21.g20613 Utricularia gibba HOM05D000108 ORTHO05D001407 1.3e-20 104.4 202 40.6
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 2.2e-20 103.6 246 37.0
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 2.9e-20 103.2 249 37.3
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 2.9e-20 103.2 213 41.8
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 3.7e-20 102.8 211 40.3
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 4.9e-20 102.4 215 41.4
Sopen04g030110 Solanum pennellii HOM05D000108 ORTHO05D001407 4.9e-20 102.4 228 38.6
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 3.2e-19 99.8 222 38.7
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 1.2e-18 97.8 211 39.3
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 1.2e-18 97.8 113 54.9
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 3.5e-18 96.3 255 39.6
C07p44710 Brassica napus HOM05D000108 ORTHO05D001407 4.6e-18 95.9 195 40.5
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 7.8e-18 95.1 206 42.2
HanXRQChr05g0163351 Helianthus annuus HOM05D000108 ORTHO05D001407 1.0e-17 94.7 252 38.9
BcaC03g18065 Brassica carinata HOM05D000108 ORTHO05D001407 1.3e-17 94.4 197 37.6
PGR031G0065 Punica granatum HOM05D000108 ORTHO05D001407 1.3e-17 94.4 105 57.1
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 1.3e-17 94.4 241 34.9
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 2.3e-17 93.6 198 42.9
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 3.0e-17 93.2 190 39.5
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 3.9e-17 92.8 198 39.4
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 5.1e-17 92.4 197 39.6
ATR0767G045 Amborella trichopoda HOM05D000108 ORTHO05D001407 6.6e-17 92.0 223 37.2
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 6.6e-17 92.0 196 37.2
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 8.6e-17 91.7 194 41.2
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.1e-16 91.3 187 38.5
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 3.3e-16 89.7 182 42.9
Sp2g24240 Schrenkiella parvula HOM05D000108 ORTHO05D001407 3.3e-16 89.7 233 36.9
Sc12g0006640 Simmondsia chinensis HOM05D000108 ORTHO05D001407 7.3e-16 88.6 217 36.9
Gohir.D06G031600 Gossypium hirsutum HOM05D000108 ORTHO05D001407 9.5e-16 88.2 227 36.6
Gorai.010G034800 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.6e-15 87.4 210 37.6
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.1e-15 87.0 225 34.2
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 2.8e-15 86.7 177 45.2
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 4.7e-15 85.9 196 36.2
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 8.1e-15 85.1 210 35.2
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 1.1e-14 84.7 254 32.3
Ca_23442_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 1.8e-14 84.0 252 33.7
Medtr5g066320 Medicago truncatula HOM05D000108 ORTHO05D001407 1.2e-13 81.3 237 38.8
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 7.5e-13 78.6 246 32.5
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 7.5e-13 78.6 245 28.6
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 2.2e-12 77.0 202 35.1
Psat2g065520 Pisum sativum HOM05D000108 ORTHO05D001407 2.2e-12 77.0 235 38.3
Cfa013796 Carpinus fangiana HOM05D000108 ORTHO05D010239 3.7e-12 76.3 188 36.2
Prupe.1G532100 Prunus persica HOM05D000108 ORTHO05D010239 8.3e-12 75.1 163 33.1
MD15G1385400 Malus domestica HOM05D000108 ORTHO05D010239 1.9e-11 73.9 154 33.8
Haze_22459 Corylus avellana HOM05D000108 ORTHO05D010239 5.4e-11 72.4 184 33.2
Manes.18G058700 Manihot esculenta HOM05D000108 ORTHO05D010239 7.1e-11 72.0 190 33.2
BcaC03g18062 Brassica carinata HOM05D000108 ORTHO05D001407 9.2e-11 71.6 198 36.4
FAN08G2432 Fragaria x ananassa HOM05D000108 ORTHO05D010239 1.6e-10 70.9 167 32.3
FAN18G4321 Fragaria x ananassa HOM05D000108 ORTHO05D010239 1.6e-10 70.9 167 32.3
FAN13G2627 Fragaria x ananassa HOM05D000108 ORTHO05D010239 2.1e-10 70.5 168 33.9
Zm00001eb254290 Zea mays HOM05D000108 ORTHO05D001407 3.5e-10 69.7 204 35.8
RcHm_v2.0_Chr7g0236371 Rosa chinensis HOM05D000108 ORTHO05D010239 4.6e-10 69.3 167 31.7
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.0e-09 68.2 226 31.9
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 1.3e-09 67.8 206 31.6
MD08G1198100 Malus domestica HOM05D000108 ORTHO05D010239 2.3e-09 67.0 136 35.3
TPR.G6308 Trifolium pratense HOM05D000108 ORTHO05D001407 2.3e-09 67.0 188 32.4
Potri.002G106100 Populus trichocarpa HOM05D000108 ORTHO05D010239 3.9e-09 66.2 185 29.7
FvH4_5g35240 Fragaria vesca HOM05D000108 ORTHO05D010239 5.1e-09 65.9 172 30.8
QL09p017810 Quercus lobata HOM05D000108 ORTHO05D010239 5.1e-09 65.9 161 33.5
Peaxi162Scf00454g00515 Petunia axillaris HOM05D000108 ORTHO05D010239 6.6e-09 65.5 111 39.6
PGR031G1243 Punica granatum HOM05D000108 ORTHO05D010239 6.6e-09 65.5 136 34.6
CiPaw.07G165500 Carya illinoinensis HOM05D000108 ORTHO05D010239 1.1e-08 64.7 218 28.9
Glyma.06G096200 Glycine max HOM05D000108 ORTHO05D001407 3.3e-08 63.2 246 26.8
Lj1g0020667 Lotus japonicus HOM05D000108 ORTHO05D010239 3.3e-08 63.2 157 31.8
Zm00001eb254320 Zea mays HOM05D000108 ORTHO05D001407 3.3e-08 63.2 201 37.3
Glyma.04G094400 Glycine max HOM05D000108 ORTHO05D001407 4.3e-08 62.8 237 32.1
BcaB07g29879 Brassica carinata HOM05D000108 ORTHO05D019684 5.6e-08 62.4 146 41.1
LjContig00408g0023522 Lotus japonicus HOM05D000108 ORTHO05D001407 7.3e-08 62.0 90 44.4
Glyma.06G096600 Glycine max HOM05D000108 ORTHO05D010239 1.6e-07 60.8 211 28.0
Sabra02G0083400 Salix brachista HOM05D000108 ORTHO05D010239 1.6e-07 60.8 184 27.7
Ca_23441_v3 Cicer arietinum L. HOM05D000108 ORTHO05D010239 2.1e-07 60.5 148 31.8
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 2.1e-07 60.5 239 27.2
VMungo1309G0378 Vigna mungo HOM05D000108 ORTHO05D010239 2.1e-07 60.5 210 27.6
TWI56G1192 Tripterygium wilfordii HOM05D000108 ORTHO05D010239 4.7e-07 59.3 145 31.7
arahy.Tifrunner.gnm1.ann1.CYPG82 Arachis hypogaea HOM05D000108 ORTHO05D010239 8.1e-07 58.5 191 29.3
Gohir.A06G032300 Gossypium hirsutum HOM05D000108 ORTHO05D010239 3.1e-06 56.6 137 29.2
Ciclev10001077m.g Citrus clementina HOM05D000108 ORTHO05D010239 5.2e-06 55.8 102 35.3
Gohir.D06G031500 Gossypium hirsutum HOM05D000108 ORTHO05D010239 6.8e-06 55.5 137 29.9


User provided reference genes

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