Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.4e-81 305.4 154 100.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.9e-58 228.0 144 79.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-55 219.9 145 76.6
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.9e-55 218.8 148 75.7
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 4.3e-54 214.9 138 76.8
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.3e-54 214.9 142 76.1
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.6e-54 214.5 143 76.2
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 7.3e-54 214.2 135 78.5
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 9.5e-54 213.8 142 76.8
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-53 213.0 143 75.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.6e-53 213.0 143 75.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.7e-53 211.5 139 76.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.7e-53 211.5 140 75.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.1e-53 211.1 140 77.1
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 8.0e-53 210.7 140 74.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.3e-52 209.1 140 73.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.1e-52 208.8 140 76.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 3.1e-52 208.8 141 75.2
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 4.0e-52 208.4 140 76.4
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 6.8e-52 207.6 140 74.3
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.8e-52 207.6 140 75.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.8e-52 207.6 141 74.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 6.8e-52 207.6 139 74.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.9e-52 207.2 140 75.7
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.5e-51 206.5 146 71.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.0e-51 206.1 144 72.2
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.6e-51 205.7 140 73.6
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.6e-51 205.7 139 74.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.4e-51 205.3 140 72.1
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 4.4e-51 204.9 137 76.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.4e-51 204.9 140 74.3
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.4e-51 204.9 139 75.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.8e-51 204.5 140 75.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 7.5e-51 204.1 145 71.0
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 7.5e-51 204.1 144 70.1
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 9.8e-51 203.8 137 76.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 9.8e-51 203.8 140 73.6
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 9.8e-51 203.8 140 73.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.3e-50 203.4 140 70.7
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.3e-50 203.4 139 74.8
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-50 203.0 132 76.5
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.2e-50 202.6 144 72.2
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.2e-50 202.6 144 71.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 2.9e-50 202.2 142 70.4
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.9e-50 201.4 144 71.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 8.3e-50 200.7 138 75.4
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 8.3e-50 200.7 144 70.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 8.3e-50 200.7 140 75.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-49 200.3 138 76.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-49 200.3 142 71.1
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.4e-49 199.9 143 72.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-49 199.9 144 70.8
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.9e-49 199.5 138 72.5
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.4e-49 199.1 139 74.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.4e-49 199.1 138 74.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.4e-49 199.1 144 69.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 3.2e-49 198.7 146 70.5
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.1e-49 198.4 144 70.8
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.1e-49 198.4 144 69.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 5.4e-49 198.0 140 73.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 9.2e-49 197.2 140 70.7
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 9.2e-49 197.2 138 73.9
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.2e-48 196.8 146 69.9
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.0e-48 196.1 146 67.8
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.7e-48 195.7 144 70.8
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.7e-48 195.7 133 73.7
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 2.7e-48 195.7 142 69.7
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-48 195.3 143 69.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.5e-48 195.3 144 68.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.6e-48 194.9 142 68.3
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.0e-48 194.5 138 72.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 7.8e-48 194.1 140 68.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-47 193.7 143 68.5
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-47 193.0 143 68.5
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.3e-47 192.6 140 67.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.0e-47 192.2 140 68.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 3.9e-47 191.8 140 67.9
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 8.6e-47 190.7 140 66.4
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.5e-46 189.9 140 68.6
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.5e-46 189.9 139 69.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.9e-46 189.5 139 66.9
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.9e-46 189.5 139 69.8
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.6e-46 188.0 140 67.9
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 7.3e-46 187.6 140 64.3
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 7.3e-46 187.6 138 67.4
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 9.5e-46 187.2 143 64.3
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 9.5e-46 187.2 146 69.2
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 9.5e-46 187.2 138 68.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-45 186.8 163 62.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-45 186.8 165 61.2
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.2e-45 186.8 138 68.8
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.6e-45 186.4 137 71.5
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.6e-45 186.4 144 62.5
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.6e-45 186.4 140 65.7
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.1e-45 186.0 140 65.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.1e-45 186.0 138 68.8
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.8e-45 185.7 138 68.1
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.6e-45 185.3 140 65.0
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 4.7e-45 184.9 140 65.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.7e-45 184.9 140 65.0
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.7e-45 184.9 135 68.1
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 8.1e-45 184.1 143 63.6
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-45 184.1 140 71.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.1e-45 184.1 140 68.6
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 8.1e-45 184.1 140 67.1
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-44 183.3 140 65.0
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.4e-44 183.3 140 64.3
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-44 183.0 146 63.7
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.8e-44 183.0 140 63.6
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.8e-44 183.0 138 66.7
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.3e-44 182.6 140 64.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.3e-44 182.6 142 65.5
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.3e-44 182.6 138 67.4
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.2e-44 181.4 140 63.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 5.2e-44 181.4 138 68.1
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 6.8e-44 181.0 132 69.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.0e-43 179.5 171 56.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 2.6e-43 179.1 144 64.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.4e-43 178.7 188 54.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 5.8e-43 177.9 138 65.9
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.8e-43 177.2 138 63.0
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.7e-42 176.4 113 76.1
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.2e-42 176.0 138 65.9
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.9e-42 175.6 132 66.7
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 6.4e-42 174.5 115 78.3
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.1e-41 171.8 140 61.4
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.1e-40 169.5 137 66.4
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 7.8e-40 167.5 146 58.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.3e-39 166.8 141 61.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.3e-39 166.8 140 59.3
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.0e-39 165.6 142 62.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 8.6e-39 164.1 127 67.7
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 8.6e-39 164.1 137 62.8
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.6e-38 161.4 140 57.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.1e-37 159.5 133 63.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 3.6e-37 158.7 140 59.3
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.6e-35 152.5 133 61.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.2e-34 149.4 138 56.5
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.0e-31 139.0 103 67.0
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.2e-29 133.7 141 52.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.8e-29 132.5 140 53.6
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.6e-29 132.1 96 70.8
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 8.1e-29 131.0 106 61.3
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.0e-28 128.6 80 77.5
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.0e-27 126.3 114 58.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 4.2e-25 118.6 157 43.3
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.6e-24 116.7 150 46.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.8e-24 114.4 66 83.3
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.3e-23 112.8 66 80.3
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.1e-22 110.5 66 78.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 9.9e-19 97.4 80 61.2
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.9e-18 95.9 127 48.0
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 6.6e-15 84.7 75 58.7
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.6e-15 84.7 52 73.1
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.9e-14 83.2 80 55.0
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-11 73.9 61 62.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 9.9e-11 70.9 44 77.3
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.4e-09 66.2 61 59.0


User provided reference genes

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