Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C710T4 Lonicera japonica HOM05D003420 ORTHO05D003970 8.5e-132 473.8 256 100.0
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.6e-117 425.6 249 91.6
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 7.7e-117 424.1 249 91.2
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 5.0e-116 421.4 249 90.8
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 6.5e-116 421.0 249 90.8
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 8.5e-116 420.6 249 90.4
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 8.5e-116 420.6 249 90.8
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 1.1e-115 420.2 249 89.2
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 1.9e-115 419.5 249 90.8
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 1.9e-115 419.5 249 89.2
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 2.5e-115 419.1 249 90.4
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 2.5e-115 419.1 249 89.2
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 3.2e-115 418.7 247 90.3
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 4.2e-115 418.3 249 88.8
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 4.2e-115 418.3 249 88.8
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 5.5e-115 417.9 249 89.2
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 5.5e-115 417.9 249 88.8
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 7.2e-115 417.5 249 89.2
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 1.6e-114 416.4 249 89.2
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 1.6e-114 416.4 249 88.4
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 2.1e-114 416.0 249 89.6
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 2.7e-114 415.6 249 90.4
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 2.7e-114 415.6 249 88.8
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 2.7e-114 415.6 249 88.8
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 2.7e-114 415.6 249 89.2
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 4.7e-114 414.8 249 87.6
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 4.7e-114 414.8 249 88.4
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 6.1e-114 414.5 250 89.6
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 1.4e-113 413.3 249 88.0
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.4e-113 413.3 249 88.8
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 1.4e-113 413.3 249 88.8
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 3.0e-113 412.1 249 88.8
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 3.9e-113 411.8 246 89.4
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 3.9e-113 411.8 249 88.4
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 3.9e-113 411.8 249 88.8
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 5.2e-113 411.4 247 87.4
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 5.2e-113 411.4 249 87.6
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 5.2e-113 411.4 249 87.6
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 6.7e-113 411.0 249 88.0
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 8.8e-113 410.6 246 89.4
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 8.8e-113 410.6 249 88.4
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 8.8e-113 410.6 249 88.4
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 1.1e-112 410.2 245 87.8
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 1.5e-112 409.8 246 87.8
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 3.3e-112 408.7 249 88.0
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 3.3e-112 408.7 249 88.0
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 4.4e-112 408.3 248 86.3
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 4.4e-112 408.3 249 86.3
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 5.7e-112 407.9 272 82.7
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 9.7e-112 407.1 249 88.0
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 1.7e-111 406.4 248 85.9
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.7e-111 406.4 248 87.9
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 2.8e-111 405.6 247 86.2
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 2.8e-111 405.6 247 86.2
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 6.3e-111 404.4 248 86.3
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 6.3e-111 404.4 248 86.3
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 8.2e-111 404.1 249 85.9
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 8.2e-111 404.1 247 85.4
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 8.2e-111 404.1 245 86.5
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 3.1e-110 402.1 249 86.3
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 3.1e-110 402.1 249 86.3
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 5.3e-110 401.4 249 85.1
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 7.0e-110 401.0 249 85.9
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 1.2e-109 400.2 249 85.5
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 1.2e-109 400.2 249 84.3
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 1.2e-109 400.2 249 85.9
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 1.6e-109 399.8 249 85.9
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 1.6e-109 399.8 248 83.9
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 2.0e-109 399.4 248 83.9
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 2.6e-109 399.1 249 85.1
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 2.6e-109 399.1 249 85.1
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 2.6e-109 399.1 249 85.1
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 2.6e-109 399.1 249 85.1
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 2.6e-109 399.1 249 85.1
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 3.5e-109 398.7 249 85.5
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 3.5e-109 398.7 249 85.5
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 85.1
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 85.1
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 85.1
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 85.1
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 85.1
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 7.7e-109 397.5 249 84.7
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.3e-108 396.7 234 90.6
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.7e-108 396.4 243 86.0
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 2.2e-108 396.0 249 84.7
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 2.2e-108 396.0 249 86.7
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 3.8e-108 395.2 249 84.7
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 5.0e-108 394.8 249 84.7
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 8.5e-108 394.0 249 85.1
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 8.5e-108 394.0 256 84.0
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 1.9e-107 392.9 261 81.2
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 2.5e-107 392.5 249 83.9
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 4.2e-107 391.7 247 83.8
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 7.2e-107 391.0 249 82.7
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 8.8e-105 384.0 251 83.7
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.2e-104 383.6 234 86.3
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 8.2e-103 377.5 245 82.0
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 1.8e-102 376.3 249 80.3
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 4.1e-102 375.2 316 68.0
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 4.1e-102 375.2 248 80.2
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 7.0e-102 374.4 248 80.2
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 2.0e-101 372.9 316 67.7
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 2.2e-100 369.4 236 83.5
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 8.5e-100 367.5 218 89.4
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 9.4e-99 364.0 248 81.5
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 6.8e-97 357.8 249 77.1
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 2.6e-96 355.9 251 76.1
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 5.7e-96 354.8 241 79.7
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 1.6e-93 346.7 249 77.9
MBI02_g35947_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 6.6e-92 341.3 248 77.8
TWI32G0245 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 1.1e-91 340.5 203 87.7
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 1.8e-89 333.2 248 76.6
CARHR290960 Cardamine hirsuta HOM05D003420 ORTHO05D003970 1.2e-88 330.5 203 85.7
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.1e-86 322.4 234 76.1
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 1.2e-85 320.5 249 69.9
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 3.3e-83 312.4 251 68.1
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 2.8e-82 309.3 248 68.5
ATR0824G022 Amborella trichopoda HOM05D003420 ORTHO05D003970 1.0e-81 307.4 283 64.7
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 1.2e-80 303.9 253 67.2
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 3.2e-78 295.8 260 67.7
Cpa.g.sc88.64 Carica papaya HOM05D003420 ORTHO05D003970 9.2e-78 294.3 172 91.9
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 7.8e-77 291.2 233 64.8
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 1.8e-73 280.0 174 87.4
vmacro11080 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 5.8e-72 275.0 203 77.3
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 1.9e-70 270.0 240 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1499 Anthoceros agrestis HOM05D003420 ORTHO05D003970 4.1e-70 268.9 232 64.7
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 7.0e-70 268.1 260 62.3
SHI09125 Sapria himalayana HOM05D003420 ORTHO05D003970 1.2e-69 267.3 375 47.7
Hund17515 Selenicereus undatus HOM05D003420 ORTHO05D003970 6.0e-69 265.0 207 71.5
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 3.9e-68 262.3 249 63.9
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 3.9e-68 262.3 249 63.9
Ca_19960_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 8.6e-60 234.6 146 85.6
SGA_v2.0_scaffold24G10292 Striga asiatica HOM05D003420 ORTHO05D003970 2.1e-50 203.4 165 70.3
GSVIVG01022862001 Vitis vinifera HOM05D003420 ORTHO05D003970 5.4e-46 188.7 116 87.9
Hma1.2p1_1261F.1_g271140 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 1.2e-45 187.6 115 88.7
Zm00001eb254950 Zea mays HOM05D003420 ORTHO05D003970 1.0e-44 184.5 103 91.3
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 2.5e-43 179.9 202 57.9
Actinidia06762 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.6e-34 150.6 97 85.6
ClCG08G008060 Citrullus lanatus HOM05D003420 ORTHO05D003970 4.5e-32 142.5 174 56.9
Psat4g195800 Pisum sativum HOM05D003420 ORTHO05D003970 1.4e-30 137.5 122 64.8
RcHm_v2.0_Chr1g0335061 Rosa chinensis HOM05D003420 ORTHO05D003970 2.7e-29 133.3 103 73.8
CANSAT56G3946 Cannabis sativa HOM05D003420 ORTHO05D003970 4.2e-22 109.4 81 75.3
Cre17.g744847 Chlamydomonas reinhardtii HOM05D003420 ORTHO05D003970 1.6e-21 107.5 224 34.4
SEGI_15136 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 2.7e-21 106.7 85 68.2
Haze_13388 Corylus avellana HOM05D011287 ORTHO05D013061 6.3e-18 95.5 63 82.5
SEGI_12719 Sequoiadendron giganteum HOM05D003420 ORTHO05D003970 6.9e-17 92.0 53 86.8
MCO11G044 Micromonas commoda HOM05D003420 ORTHO05D003970 3.4e-16 89.7 232 30.6
Os02g0749500 Oryza sativa ssp. japonica HOM05D003420 ORTHO05D003970 5.9e-16 89.0 55 85.5
RcHm_v2.0_Chr1g0335071 Rosa chinensis HOM05D003420 ORTHO05D003970 7.7e-16 88.6 58 81.0
Cpa.g.sc66.127 Carica papaya HOM05D003420 ORTHO05D003970 1.1e-11 74.7 52 76.9
CARHR290950 Cardamine hirsuta HOM05D003420 ORTHO05D003970 3.3e-11 73.2 46 84.8
Cfa000383 Carpinus fangiana HOM05D003420 ORTHO05D003970 5.7e-11 72.4 43 86.0
Haze_13390 Corylus avellana HOM05D003420 ORTHO05D003970 4.8e-10 69.3 40 87.5
Glyma.03G026300 Glycine max HOM05D003420 ORTHO05D003970 4.8e-10 69.3 44 81.8
Glyma.03G026400 Glycine max HOM05D003420 ORTHO05D003970 4.8e-10 69.3 44 81.8
Migut.I00210 Erythranthe guttata HOM05D003420 ORTHO05D003970 1.1e-09 68.2 76 52.6
Cfa025323 Carpinus fangiana HOM05D003420 ORTHO05D122787 1.8e-09 67.4 226 25.2
Haze_13391 Corylus avellana HOM05D003420 ORTHO05D003970 2.4e-09 67.0 43 81.4
vmacro03706 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 1.5e-08 64.3 43 79.1
MELO3C030259.2 Cucumis melo HOM05D003420 ORTHO05D003970 1.0e-07 61.6 43 74.4
PSO210G3754 Papaver somniferum HOM05D003420 ORTHO05D003970 2.9e-07 60.1 78 53.8
RcHm_v2.0_Chr2g0113821 Rosa chinensis HOM05D003420 ORTHO05D003970 3.8e-07 59.7 33 87.9
BcaB04g20817 Brassica carinata HOM05D003420 ORTHO05D027085 8.5e-07 58.5 142 36.6
vmacro11081 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 1.1e-06 58.2 37 81.1


User provided reference genes

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