Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 924 100.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1346.3 960 75.3
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1344.7 958 74.7
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1338.9 957 74.6
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1335.5 956 74.3
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1328.2 958 74.1
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1327.0 955 73.7
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1326.6 969 73.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1326.2 959 73.7
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1325.8 955 73.6
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1324.7 960 74.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1323.1 957 73.9
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1320.8 966 73.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1318.9 958 73.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1317.0 966 73.0
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1315.1 966 72.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1314.3 966 72.9
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1312.7 957 72.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1312.7 959 73.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1312.7 966 72.9
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1312.0 956 73.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1312.0 955 72.9
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1311.6 958 73.5
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1305.4 957 72.4
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1305.4 960 72.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1305.4 956 73.0
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1303.9 959 72.8
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1303.5 956 72.8
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1302.3 959 72.6
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1298.9 956 72.8
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1295.0 957 72.3
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1293.5 961 72.2
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1289.6 960 72.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1286.6 972 71.6
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1285.0 981 70.8
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1284.6 957 72.0
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1282.7 955 71.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1282.3 972 71.5
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1282.3 958 71.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1282.3 982 70.5
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1281.2 951 72.9
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1281.2 959 71.4
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1280.8 959 72.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1280.8 954 72.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1280.8 960 70.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1278.1 958 70.6
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1275.0 956 70.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1275.0 958 70.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1274.6 941 71.9
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1274.6 956 70.7
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1274.2 951 72.3
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1274.2 956 70.9
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1272.7 990 71.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1271.1 956 72.4
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1271.1 954 71.6
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1269.6 951 72.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1268.8 983 71.3
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1267.7 953 70.8
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1267.7 954 70.5
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1266.1 968 70.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1265.4 954 71.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1264.2 959 70.9
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1263.4 958 70.3
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1262.7 956 70.4
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1262.7 958 70.9
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1261.1 962 71.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1260.0 951 71.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1258.8 967 70.0
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 958 69.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 951 71.1
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1257.7 931 72.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1256.9 961 71.2
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1250.0 938 72.8
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1248.8 960 70.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1246.9 956 70.0
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1246.5 982 68.7
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1246.1 957 69.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1245.3 956 70.2
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1244.6 960 69.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1243.4 957 69.5
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1243.0 958 69.8
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1242.6 960 69.1
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1241.9 967 69.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1236.9 956 70.6
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1236.5 945 70.9
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1236.1 958 69.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1234.2 939 72.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1232.2 941 71.3
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1231.1 988 67.8
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1230.3 958 68.9
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1226.8 961 69.3
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1226.5 952 69.2
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1225.3 963 69.4
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1221.5 958 68.4
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1220.3 954 67.9
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1218.8 958 68.4
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1214.5 1016 66.2
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1212.2 1012 65.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1211.8 1018 65.8
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1211.1 957 67.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1209.5 957 68.8
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1204.5 958 67.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1203.7 958 67.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1203.3 963 68.2
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1203.3 958 67.8
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1200.7 959 68.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1199.9 960 67.5
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1198.0 954 68.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1194.1 957 67.7
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1193.7 912 69.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1188.7 959 67.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1175.6 958 66.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1174.5 957 66.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1169.1 948 66.2
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1167.9 950 66.4
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1162.1 949 65.5
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1161.0 960 65.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1155.2 859 71.9
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1153.3 965 65.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1150.2 962 64.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1137.5 957 65.6
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1129.0 959 64.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 2.5e-311 1072.0 955 62.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 1.3e-310 1069.7 829 69.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.6e-310 1069.3 842 68.6
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 5.3e-309 1064.3 707 78.9
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.5e-292 1009.6 831 67.1
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 2.2e-283 979.2 708 72.9
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 5.2e-272 941.4 746 69.4
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 5.9e-268 927.9 764 68.2
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 4.2e-266 921.8 746 67.3
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 1.8e-264 916.4 704 70.0
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 6.8e-248 861.3 935 54.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.3e-234 815.8 673 68.2
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.4e-229 798.5 737 61.3
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 4.3e-226 788.9 630 69.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 3.4e-223 779.2 565 73.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 9.6e-218 761.1 920 51.4
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 9.3e-197 691.4 930 45.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 3.7e-193 679.5 979 42.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.5e-150 535.8 299 89.3
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.5e-109 401.7 643 43.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.8e-107 394.8 313 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 9.9e-106 389.0 808 34.0
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 3.8e-89 334.0 1228 28.3
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.1e-88 329.7 189 88.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.2e-82 312.4 480 43.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 9.3e-80 302.8 232 70.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.8e-78 298.5 205 74.1
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.8e-70 271.9 186 72.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 3.3e-69 267.7 249 61.8
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.9e-64 251.9 144 83.3
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.0e-57 229.6 187 65.8
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 6.1e-55 220.3 119 92.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 4.7e-47 194.1 113 87.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 8.0e-47 193.4 118 83.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.0e-46 191.4 120 82.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 4.0e-46 191.0 152 67.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 7.0e-43 180.3 120 75.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.3e-36 159.5 92 88.0
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 2.4e-27 128.6 69 89.9
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.4e-27 128.6 69 89.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 7.7e-26 123.6 91 62.6
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 7.7e-26 123.6 91 62.6
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.0e-25 123.2 86 67.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.1e-23 115.5 64 89.1
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.3e-22 112.1 93 66.7
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.0e-18 99.0 83 62.7
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 8.9e-14 83.6 82 50.0
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.2e-13 83.2 85 56.5


User provided reference genes

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