Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 0.0e+00 4400.5 2313 100.0
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 3.9e-34 152.5 348 36.5
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 2.2e-29 136.7 376 35.4
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 4.2e-28 132.5 374 34.0
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 1.2e-27 131.0 640 27.7
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 6.0e-27 128.6 469 31.8
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 7.9e-27 128.3 468 31.4
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.3e-26 127.5 369 35.5
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 5.1e-26 125.6 469 31.6
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 3.3e-25 122.9 683 24.9
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 5.6e-25 122.1 382 32.7
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 7.4e-25 121.7 273 34.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.1e-24 120.2 544 27.9
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 2.8e-24 119.8 225 41.3
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 4.8e-24 119.0 195 44.1
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.8e-23 117.1 429 28.4
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 6.9e-23 115.2 487 28.1
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 7.6e-22 111.7 452 30.3
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 7.6e-22 111.7 436 30.7
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.9e-21 109.8 98 57.1
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 4.9e-21 109.0 537 28.7
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.9e-21 109.0 265 33.2
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 1.1e-20 107.8 548 27.6
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 1.1e-20 107.8 722 26.2
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 4.2e-20 105.9 366 33.1
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 7.1e-20 105.1 122 49.2
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 1.2e-19 104.4 161 40.4
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 2.1e-19 103.6 829 23.2
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 7.9e-19 101.7 509 25.9
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 1.3e-18 100.9 154 44.2
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.8e-18 100.5 173 41.0
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 3.0e-18 99.8 725 26.5
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 5.1e-18 99.0 278 34.2
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 8.7e-18 98.2 668 27.7
Lj8C220T13 Lonicera japonica HOM05D047794 ORTHO05D010674 8.7e-18 98.2 82 65.9
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 1.1e-17 97.8 441 29.7
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 1.5e-17 97.4 516 26.6
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.9e-17 97.1 192 37.0
Lj8C220T16 Lonicera japonica HOM05D047794 ORTHO05D010674 2.1e-16 93.6 82 63.4
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 6.3e-16 92.0 174 37.9
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 4.1e-15 89.4 364 31.3
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 6.9e-15 88.6 367 29.7
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.2e-14 87.8 422 27.3
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 4.5e-14 85.9 835 24.0
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 7.6e-14 85.1 129 43.4
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.3e-13 84.3 535 26.5
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 1.3e-13 84.3 162 38.9
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 3.8e-13 82.8 266 35.0
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.8e-13 82.8 499 26.5
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 5.0e-13 82.4 101 46.5
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.0e-13 82.4 379 29.8
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 7.2e-12 78.6 313 29.7
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 9.3e-12 78.2 96 45.8
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 2.1e-11 77.0 136 39.7
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 3.6e-11 76.3 103 45.6
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 3.6e-11 76.3 101 46.5
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 3.6e-11 76.3 107 43.0
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 7.9e-11 75.1 146 37.0
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.8e-10 73.9 334 30.5
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 2.3e-10 73.6 380 26.8
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.0e-10 73.2 389 29.8
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 5.1e-10 72.4 162 33.3
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 2.5e-09 70.1 701 23.7
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.3e-09 69.7 395 28.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.6e-08 67.4 43 72.1
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 1.6e-08 67.4 43 72.1
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 3.7e-08 66.2 91 41.8
Aqoxy6G00395 Aquilegia oxysepala HOM05D011323 ORTHO05D010674 4.8e-08 65.9 366 27.0
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 6.3e-08 65.5 43 67.4
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 6.3e-08 65.5 95 44.2
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 6.3e-08 65.5 95 44.2
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 1.1e-07 64.7 42 66.7
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 1.1e-07 64.7 39 79.5
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 1.1e-07 64.7 41 73.2
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.4e-07 64.3 70 50.0
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 1.4e-07 64.3 41 73.2
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.4e-07 64.3 101 41.6
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 2.4e-07 63.5 41 68.3
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 4.1e-07 62.8 38 71.1
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 4.1e-07 62.8 173 31.8
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 6.9e-07 62.0 41 68.3
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.9e-07 62.0 140 34.3
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 6.9e-07 62.0 77 48.1
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 1.2e-06 61.2 173 30.6
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.5e-06 60.8 77 45.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.0e-06 60.5 98 43.9
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.6e-06 60.1 238 26.1
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.6e-06 60.1 98 42.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.6e-06 60.1 98 42.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.4e-06 59.7 81 44.4
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 3.4e-06 59.7 78 41.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.5e-06 59.3 81 43.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.5e-06 59.3 139 31.7
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 5.9e-06 58.9 62 46.8
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 5.9e-06 58.9 64 48.4
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 5.9e-06 58.9 44 61.4
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 7.7e-06 58.5 77 41.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 7.7e-06 58.5 77 41.6
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.7e-06 58.5 124 35.5


User provided reference genes

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