Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 2.1e-277 958.4 479 100.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.4e-209 733.0 633 63.5
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.4e-207 726.5 633 63.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 4.4e-206 721.5 649 61.6
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 9.7e-206 720.3 635 61.1
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.1e-204 714.9 622 63.0
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 3.9e-199 698.4 615 61.5
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 2.2e-197 692.6 629 61.2
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.8e-197 692.2 615 61.3
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 6.3e-197 691.0 614 61.6
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.1e-196 690.3 624 60.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.4e-196 689.9 619 59.8
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.4e-196 689.1 630 61.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.3e-196 688.0 619 60.6
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 7.0e-196 687.6 633 60.3
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.5e-195 685.3 627 60.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 4.5e-195 684.9 613 61.5
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.7e-195 684.1 614 61.1
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-194 683.3 606 60.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.3e-194 683.3 612 61.1
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.2e-194 682.6 633 59.2
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.2e-194 682.6 618 60.4
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.8e-194 681.8 611 60.6
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.8e-194 681.8 614 60.9
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 5.0e-194 681.4 610 61.5
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.1e-193 680.2 633 59.9
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.9e-193 679.5 642 58.3
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 3.2e-193 678.7 623 59.6
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 4.2e-193 678.3 605 61.0
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 5.5e-193 677.9 611 61.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 9.4e-193 677.2 617 60.3
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.2e-192 676.8 635 59.1
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.2e-192 676.8 635 59.1
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.2e-192 676.8 613 60.7
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.2e-192 676.8 636 57.5
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-192 676.4 620 60.0
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.1e-192 676.0 625 59.2
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.1e-192 676.0 625 59.4
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.7e-192 675.6 614 60.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 6.1e-192 674.5 633 58.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 6.1e-192 674.5 641 58.3
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 8.0e-192 674.1 616 60.9
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 1.4e-191 673.3 611 60.2
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.3e-191 672.5 611 60.6
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.8e-191 671.0 646 56.7
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.0e-190 669.5 613 60.5
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.4e-190 668.7 613 60.4
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.4e-190 668.7 609 59.8
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 4.4e-190 668.3 611 60.4
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 9.8e-190 667.2 612 59.0
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.3e-189 666.8 641 58.2
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.2e-189 666.0 613 60.5
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 2.8e-189 665.6 522 66.5
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.7e-189 665.2 630 58.1
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.3e-189 664.5 650 57.1
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 6.3e-189 664.5 611 60.2
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.4e-188 663.3 613 60.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.8e-188 662.9 586 61.3
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.8e-188 662.9 614 59.9
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.1e-188 662.1 610 60.3
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.4e-188 661.4 627 58.7
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.2e-187 660.2 648 56.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 1.2e-187 660.2 617 59.0
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 2.0e-187 659.4 624 58.3
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.7e-187 659.1 606 60.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.7e-186 656.4 604 59.3
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 8.5e-186 654.1 618 59.1
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 1.9e-185 652.9 638 57.1
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 1.2e-184 650.2 607 59.3
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.6e-184 649.8 635 56.9
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.7e-184 648.3 636 56.6
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 5.2e-183 644.8 607 59.0
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 6.8e-183 644.4 618 57.9
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.6e-182 642.5 745 50.3
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 1.3e-181 640.2 607 57.8
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 5.4e-180 634.8 508 65.0
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 7.0e-180 634.4 645 55.7
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 5.9e-179 631.3 646 55.6
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.5e-177 626.7 575 60.5
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 9.5e-177 624.0 621 57.2
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.6e-176 622.1 613 57.7
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.7e-176 621.7 613 57.9
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 8.0e-176 620.9 364 84.9
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 8.0e-176 620.9 654 53.8
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.4e-175 620.2 637 56.0
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.4e-175 620.2 618 56.8
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 4.0e-175 618.6 485 66.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 3.4e-174 615.5 364 82.4
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.9e-173 611.7 610 57.0
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.4e-172 609.4 619 56.2
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.2e-172 609.0 552 59.1
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.1e-172 608.6 586 57.2
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.0e-171 606.3 621 53.9
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 1.0e-170 604.0 539 59.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.0e-170 604.0 632 53.6
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.9e-169 599.7 626 55.6
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.5e-169 599.4 608 55.4
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.1e-168 596.3 609 54.2
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 2.1e-168 596.3 608 54.4
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.1e-168 596.3 619 53.5
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.2e-167 591.7 613 56.4
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 8.3e-165 584.3 595 53.9
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.1e-164 583.9 589 54.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.1e-164 583.9 589 54.3
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.1e-164 583.9 595 53.9
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 3.2e-164 582.4 621 53.0
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.2e-163 580.5 583 55.4
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.6e-163 580.1 391 74.2
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.5e-163 578.9 604 53.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 3.5e-163 578.9 621 52.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.3e-162 577.0 364 76.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 9.5e-161 570.9 590 53.4
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.3e-159 566.2 678 49.7
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.3e-153 545.4 593 52.1
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.1e-151 539.3 523 57.4
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.5e-150 537.0 317 82.3
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 9.9e-150 534.3 363 71.6
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 9.9e-150 534.3 370 72.4
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.6e-147 526.9 578 50.7
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.4e-143 513.1 315 79.7
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 6.8e-143 511.5 302 81.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.2e-139 500.7 620 48.9
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 8.7e-138 494.6 365 66.8
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 1.5e-137 493.8 655 44.1
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.0e-134 483.4 552 49.6
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 5.1e-130 468.8 636 43.1
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 2.5e-129 466.5 314 72.9
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.5e-126 457.2 515 48.5
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 6.0e-123 445.3 300 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 9.6e-121 438.0 677 39.6
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.0e-119 432.6 308 75.0
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.5e-107 392.9 559 43.5
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 2.2e-101 373.6 258 69.8
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 2.2e-101 373.6 258 69.8
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.4e-58 231.5 350 37.4
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 6.8e-58 229.2 148 79.7
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.2e-38 165.2 193 51.8
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.2e-33 148.7 87 81.6
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 6.0e-30 136.3 166 52.4
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 8.1e-27 125.9 244 35.7
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.1e-22 111.3 192 39.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.7e-21 108.2 324 30.6
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.3e-21 107.8 158 46.8
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 5.8e-17 93.2 133 45.9
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 5.8e-17 93.2 67 68.7
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.7e-14 84.3 60 70.0
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 6.2e-11 73.2 160 36.2
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 4.9e-08 63.5 148 33.1
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.4e-07 61.2 127 38.6
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 3.5e-06 57.4 48 58.3
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 6.0e-06 56.6 41 61.0


User provided reference genes

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