Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C664T3 Lonicera japonica HOM05D003949 ORTHO05D004504 1.3e-70 269.6 134 100.0
Lj4A674G53 Lonicera japonica HOM05D003949 ORTHO05D004504 1.8e-64 249.2 122 99.2
CSS0001496 Camellia sinensis var. sinensis HOM05D003949 ORTHO05D004504 2.6e-39 165.6 123 69.1
Dinv27260 Davidia involucrata HOM05D003949 ORTHO05D004504 3.7e-38 161.8 124 66.9
Dinv14706 Davidia involucrata HOM05D003949 ORTHO05D004504 1.4e-37 159.8 124 65.3
Actinidia29493 Actinidia chinensis HOM05D003949 ORTHO05D004504 1.2e-36 156.8 126 63.5
Hma1.2p1_1732F.1_g299770 Hydrangea macrophylla HOM05D003949 ORTHO05D004504 2.5e-34 149.1 128 64.1
Rhsim11G0072500 Rhododendron simsii HOM05D003949 ORTHO05D004504 3.6e-33 145.2 122 67.2
Cfa018416 Carpinus fangiana HOM05D003949 ORTHO05D004504 1.4e-32 143.3 109 67.0
Sopen02g010800 Solanum pennellii HOM05D003949 ORTHO05D004504 1.4e-32 143.3 124 60.5
Actinidia03427 Actinidia chinensis HOM05D003949 ORTHO05D004504 1.8e-32 142.9 124 58.9
Actinidia33635 Actinidia chinensis HOM05D003949 ORTHO05D004504 3.1e-32 142.1 126 57.9
Haze_17645 Corylus avellana HOM05D003949 ORTHO05D004504 1.5e-31 139.8 111 67.6
Duzib093G1312 Durio zibethinus HOM05D003949 ORTHO05D004504 1.5e-31 139.8 105 70.5
Lsat_1_v5_gn_1_7940 Lactuca sativa HOM05D003949 ORTHO05D004504 4.4e-31 138.3 96 68.8
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 4.4e-31 138.3 92 75.0
Gohir.A05G269300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 5.8e-31 137.9 127 61.4
Manes.18G083500 Manihot esculenta HOM05D003949 ORTHO05D004504 5.8e-31 137.9 97 71.1
Duzib041G0733 Durio zibethinus HOM05D003949 ORTHO05D004504 7.5e-31 137.5 110 70.0
Potri.005G183600 Populus trichocarpa HOM05D003949 ORTHO05D004504 9.8e-31 137.1 126 58.7
Sabra05G0139000 Salix brachista HOM05D003949 ORTHO05D004504 2.9e-30 135.6 109 65.1
Ciclev10002113m.g Citrus clementina HOM05D003949 ORTHO05D004504 3.7e-30 135.2 114 67.5
vmacro00872 Vaccinium macrocarpon HOM05D003949 ORTHO05D004504 6.4e-30 134.4 121 64.5
Gohir.D05G271200 Gossypium hirsutum HOM05D003949 ORTHO05D004504 8.3e-30 134.0 127 60.6
Gorai.009G284100 Gossypium raimondii HOM05D003949 ORTHO05D004504 8.3e-30 134.0 127 60.6
CAN.G215.13 Capsicum annuum HOM05D003949 ORTHO05D004504 1.1e-29 133.7 99 69.7
ClCG09G021850 Citrullus lanatus HOM05D003949 ORTHO05D004504 1.1e-29 133.7 103 66.0
Thecc.08G134300 Theobroma cacao HOM05D003949 ORTHO05D004504 1.1e-29 133.7 98 71.4
COL.COLO4_36870 Corchorus olitorius HOM05D003949 ORTHO05D004504 2.4e-29 132.5 97 74.2
MELO3C015709.2 Cucumis melo HOM05D003949 ORTHO05D004504 2.4e-29 132.5 103 66.0
Sed0004108 Sechium edule HOM05D003949 ORTHO05D004504 2.4e-29 132.5 124 59.7
Solyc02g032510.3 Solanum lycopersicum HOM05D003949 ORTHO05D004504 3.2e-29 132.1 96 68.8
ECA248G3438 Erigeron canadensis HOM05D003949 ORTHO05D004504 5.4e-29 131.3 97 68.0
BcaC01g04773 Brassica carinata HOM05D003949 ORTHO05D004504 7.0e-29 131.0 115 60.9
C03p33900 Brassica napus HOM05D003949 ORTHO05D004504 7.0e-29 131.0 115 60.9
BolC3t15703H Brassica oleracea HOM05D003949 ORTHO05D004504 7.0e-29 131.0 115 60.9
CsaV3_7G022150 Cucumis sativus L. HOM05D003949 ORTHO05D004504 7.0e-29 131.0 103 66.0
Nitab4.5_0000389g0100 Nicotiana tabacum HOM05D003949 ORTHO05D004504 7.0e-29 131.0 134 56.7
QL09p031595 Quercus lobata HOM05D003949 ORTHO05D004504 7.0e-29 131.0 108 63.0
QL09p032129 Quercus lobata HOM05D003949 ORTHO05D004504 9.2e-29 130.6 108 63.0
BcaB01g02864 Brassica carinata HOM05D003949 ORTHO05D004504 1.2e-28 130.2 125 57.6
THA.LOC104808256 Tarenaya hassleriana HOM05D003949 ORTHO05D004504 1.2e-28 130.2 101 68.3
Potri.002G077000 Populus trichocarpa HOM05D003949 ORTHO05D004504 1.6e-28 129.8 113 61.9
Sp6g09480 Schrenkiella parvula HOM05D003949 ORTHO05D004504 1.6e-28 129.8 93 69.9
Carub.0006s2698 Capsella rubella HOM05D003949 ORTHO05D004504 7.8e-28 127.5 123 56.1
QL09p032138 Quercus lobata HOM05D003949 ORTHO05D004504 7.8e-28 127.5 96 67.7
A03p28040 Brassica napus HOM05D003949 ORTHO05D004504 1.0e-27 127.1 106 64.2
BraA03t12017Z Brassica rapa HOM05D003949 ORTHO05D004504 1.0e-27 127.1 106 64.2
Peaxi162Scf00565g00310 Petunia axillaris HOM05D003949 ORTHO05D004504 1.0e-27 127.1 105 64.8
DCAR_003593 Daucus carota HOM05D003949 ORTHO05D004504 2.3e-27 125.9 97 69.1
Nitab4.5_0000005g0360 Nicotiana tabacum HOM05D003949 ORTHO05D004504 2.3e-27 125.9 105 64.8
AT4G08455 Arabidopsis thaliana HOM05D003949 ORTHO05D004504 3.9e-27 125.2 122 57.4
Sed0003495 Sechium edule HOM05D003949 ORTHO05D004504 3.9e-27 125.2 103 62.1
Atru.chr13.1594 Acer truncatum HOM05D003949 ORTHO05D004504 6.6e-27 124.4 110 60.9
Ah.05g169030 Amaranthus hybridus HOM05D003949 ORTHO05D004504 6.6e-27 124.4 95 68.4
AL6G42240 Arabidopsis lyrata HOM05D003949 ORTHO05D004504 6.6e-27 124.4 122 56.6
Thhalv10028837m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 6.6e-27 124.4 122 56.6
Cpa.g.sc64.155 Carica papaya HOM05D003949 ORTHO05D004504 1.5e-26 123.2 95 65.3
QL09p031603 Quercus lobata HOM05D003949 ORTHO05D004504 1.5e-26 123.2 96 64.6
Nn1g08941 Nelumbo nucifera HOM05D003949 ORTHO05D004504 1.9e-26 122.9 101 65.3
CARHR259500 Cardamine hirsuta HOM05D003949 ORTHO05D004504 2.5e-26 122.5 93 67.7
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 4.3e-26 121.7 102 61.8
GSVIVG01008796001 Vitis vinifera HOM05D003949 ORTHO05D004504 4.3e-26 121.7 93 67.7
PSO170G4419 Papaver somniferum HOM05D003949 ORTHO05D004504 9.5e-26 120.6 107 59.8
PSO528G0283 Papaver somniferum HOM05D003949 ORTHO05D004504 9.5e-26 120.6 107 59.8
EL10Ac1g01369 Beta vulgaris HOM05D003949 ORTHO05D004504 1.2e-25 120.2 106 66.0
Prupe.1G487700 Prunus persica HOM05D003949 ORTHO05D004504 1.6e-25 119.8 93 66.7
Eucgr.E00983 Eucalyptus grandis HOM05D003949 ORTHO05D004504 6.2e-25 117.9 117 54.7
TWI34G1744 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 6.2e-25 117.9 104 64.4
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 1.1e-24 117.1 109 58.7
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 1.1e-24 117.1 109 58.7
AUR62007697 Chenopodium quinoa HOM05D003949 ORTHO05D004504 6.8e-24 114.4 96 66.7
PGR042G2128 Punica granatum HOM05D003949 ORTHO05D004504 6.8e-24 114.4 96 63.5
Aa31LG9G14160 Aethionema arabicum HOM05D003949 ORTHO05D004504 8.9e-24 114.0 111 55.0
Oeu047168.1 Olea europaea HOM05D003949 ORTHO05D004504 8.9e-24 114.0 98 63.3
MD15G1132500 Malus domestica HOM05D003949 ORTHO05D004504 1.2e-23 113.6 93 67.7
RcHm_v2.0_Chr6g0296891 Rosa chinensis HOM05D003949 ORTHO05D004504 1.2e-23 113.6 93 65.6
Cc10_g13590 Coffea canephora HOM05D003949 ORTHO05D004504 1.5e-23 113.2 94 66.0
MBI06_g32174_MAGBIO Magnolia biondii HOM05D003949 ORTHO05D004504 2.6e-23 112.5 98 59.2
Sabra02G0060500 Salix brachista HOM05D003949 ORTHO05D004504 2.2e-22 109.4 82 64.6
TWI32G1346 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 4.9e-22 108.2 101 62.4
HanXRQChr02g0045541 Helianthus annuus HOM05D003949 ORTHO05D004504 6.4e-22 107.8 93 60.2
Eucgr.E00988 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.1e-21 107.1 99 58.6
Migut.N03257 Erythranthe guttata HOM05D003949 ORTHO05D004504 2.4e-21 105.9 102 58.8
CiPaw.16G022200 Carya illinoinensis HOM05D003949 ORTHO05D004504 3.2e-21 105.5 87 60.9
FvH4_2g28021 Fragaria vesca HOM05D003949 ORTHO05D004504 9.2e-21 104.0 93 61.3
FAN20G1921 Fragaria x ananassa HOM05D003949 ORTHO05D004504 9.2e-21 104.0 93 61.3
FAN24G2840 Fragaria x ananassa HOM05D003949 ORTHO05D004504 9.2e-21 104.0 93 61.3
FAN15G0925 Fragaria x ananassa HOM05D003949 ORTHO05D004504 1.2e-20 103.6 93 60.2
FAN15G2352 Fragaria x ananassa HOM05D003949 ORTHO05D004504 1.2e-20 103.6 93 60.2
CANSAT56G1102 Cannabis sativa HOM05D003949 ORTHO05D004504 2.1e-20 102.8 101 55.4
FAN27G1067 Fragaria x ananassa HOM05D003949 ORTHO05D004504 2.1e-20 102.8 93 60.2
CDE02G1310 Ceratophyllum demersum HOM05D003949 ORTHO05D004504 4.6e-20 101.7 93 53.8
Migut.C01075 Erythranthe guttata HOM05D003949 ORTHO05D004504 6.0e-20 101.3 98 58.2
MSTRG.1405 Avicennia marina HOM05D003949 ORTHO05D004504 2.3e-19 99.4 96 57.3
Sc15g0007490 Simmondsia chinensis HOM05D003949 ORTHO05D004504 1.1e-18 97.1 94 57.4
Lalb_Chr11g0066221 Lupinus albus HOM05D003949 ORTHO05D004504 1.5e-18 96.7 121 48.8
SGA_v2.0_scaffold28G11965 Striga asiatica HOM05D003949 ORTHO05D004504 1.9e-18 96.3 102 56.9
unitig_26.g9909 Utricularia gibba HOM05D003949 ORTHO05D004504 1.9e-18 96.3 96 53.1
unitig_749.g13929 Utricularia gibba HOM05D003949 ORTHO05D004504 2.5e-18 95.9 96 52.1
HPP92_003126 Vanilla planifolia HOM05D003949 ORTHO05D004504 3.3e-18 95.5 91 58.2
CiPaw.15G030200 Carya illinoinensis HOM05D003949 ORTHO05D004504 5.6e-18 94.7 101 53.5
Lj1g0017464 Lotus japonicus HOM05D003949 ORTHO05D004504 5.6e-18 94.7 93 57.0
Psat5g084280 Pisum sativum HOM05D003949 ORTHO05D004504 7.3e-18 94.4 106 53.8
Actinidia28678 Actinidia chinensis HOM05D003949 ORTHO05D004504 1.6e-17 93.2 76 59.2
Glyma.06G118200 Glycine max HOM05D003949 ORTHO05D004504 1.6e-17 93.2 105 48.6
Ca_16616_v3 Cicer arietinum L. HOM05D003949 ORTHO05D004504 4.7e-17 91.7 91 56.0
VMungo1309G1661 Vigna mungo HOM05D003949 ORTHO05D004504 1.4e-16 90.1 93 51.6
Glyma.04G244900 Glycine max HOM05D003949 ORTHO05D004504 3.1e-16 89.0 105 48.6
ATR1001G004 Amborella trichopoda HOM05D003949 ORTHO05D004504 4.0e-16 88.6 93 54.8
Os07g0258700 Oryza sativa ssp. japonica HOM05D003949 ORTHO05D004504 4.0e-16 88.6 95 54.7
Eucgr.E00992 Eucalyptus grandis HOM05D003949 ORTHO05D004504 4.4e-15 85.1 94 52.1
Sp6g09470 Schrenkiella parvula HOM05D003949 ORTHO05D004504 4.4e-15 85.1 107 45.8
Medtr3g088660 Medicago truncatula HOM05D003949 ORTHO05D004504 7.6e-15 84.3 122 42.6
Gohir.A02G070300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 1.3e-14 83.6 89 51.7
Phvul.009G130700 Phaseolus vulgaris HOM05D003949 ORTHO05D004504 1.3e-14 83.6 101 45.5
SEGI_15749 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 8.4e-14 80.9 93 44.1
Zm00001eb304620 Zea mays HOM05D003949 ORTHO05D004504 1.4e-13 80.1 98 49.0
Eucgr.E00993 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.9e-13 79.7 94 51.1
PGR042G1779 Punica granatum HOM05D003949 ORTHO05D004504 1.9e-13 79.7 96 50.0
Actinidia33356 Actinidia chinensis HOM05D003949 ORTHO05D004504 2.7e-12 75.9 126 38.1
Eucgr.L00420 Eucalyptus grandis HOM05D003949 ORTHO05D004504 6.6e-11 71.2 95 46.3
Thhalv10024159m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 3.3e-10 68.9 93 43.0
Thhalv10023183m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 3.6e-09 65.5 93 45.2
Thhalv10016014m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 2.4e-08 62.8 84 44.0
Thhalv10029206m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 5.2e-08 61.6 95 42.1
Eucgr.E00994 Eucalyptus grandis HOM05D003949 ORTHO05D004504 2.6e-07 59.3 98 39.8
Prupe.1G488200 Prunus persica HOM05D003949 ORTHO05D004504 4.4e-07 58.5 93 40.9
Prupe.1G488400 Prunus persica HOM05D003949 ORTHO05D004504 5.8e-07 58.2 93 43.0
Duzib116G0071 Durio zibethinus HOM05D003949 ORTHO05D004504 2.9e-06 55.8 97 42.3
TPR.G6334 Trifolium pratense HOM05D003949 ORTHO05D004504 2.9e-06 55.8 96 42.7


User provided reference genes

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