Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 4.8e-61 237.7 121 100.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 9.8e-46 186.8 121 76.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.0e-43 179.1 121 75.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-42 176.4 121 73.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-42 176.4 121 72.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.7e-42 176.0 122 72.1
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 5.0e-42 174.5 117 71.8
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 6.5e-42 174.1 117 72.6
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.1e-41 173.3 122 71.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-41 173.3 122 71.3
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-41 173.3 122 71.3
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.9e-41 172.6 118 72.9
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.5e-41 172.2 117 71.8
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.2e-41 171.8 121 70.2
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.2e-41 171.4 122 71.3
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 7.2e-41 170.6 117 72.6
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 9.5e-41 170.2 121 70.2
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.2e-40 169.9 118 71.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 2.8e-40 168.7 117 74.4
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.6e-40 168.3 121 71.9
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 3.6e-40 168.3 122 71.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 8.0e-40 167.2 121 71.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.0e-39 166.8 120 71.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.4e-39 166.4 121 70.2
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.8e-39 166.0 118 66.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 3.0e-39 165.2 121 67.8
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.0e-39 165.2 127 66.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.0e-39 165.2 121 69.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 5.2e-39 164.5 121 66.9
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 5.2e-39 164.5 121 66.9
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 5.2e-39 164.5 121 67.8
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 5.2e-39 164.5 121 67.8
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 6.8e-39 164.1 122 68.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 8.8e-39 163.7 121 66.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 8.8e-39 163.7 120 68.3
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.2e-38 163.3 118 71.2
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.5e-38 162.9 128 65.6
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 2.0e-38 162.5 121 68.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.0e-38 162.5 121 67.8
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.6e-38 162.2 121 66.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 3.4e-38 161.8 121 66.9
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.4e-38 161.4 121 66.9
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 5.7e-38 161.0 121 66.1
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 5.7e-38 161.0 121 67.8
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 9.8e-38 160.2 121 66.1
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.3e-37 159.8 125 66.4
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.7e-37 159.5 127 66.1
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.2e-37 159.1 118 66.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-37 158.7 121 67.8
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-37 158.3 120 65.0
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 6.3e-37 157.5 118 66.1
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 6.3e-37 157.5 118 67.8
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-36 156.4 118 67.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.8e-36 156.0 118 65.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.1e-36 155.2 120 64.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 3.1e-36 155.2 127 64.6
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.1e-36 154.8 122 68.9
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 5.4e-36 154.5 121 63.6
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.4e-36 154.5 118 67.8
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 7.0e-36 154.1 126 62.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 7.0e-36 154.1 121 63.6
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 9.2e-36 153.7 124 64.5
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 9.2e-36 153.7 122 63.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.2e-35 153.3 121 65.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.2e-35 153.3 117 63.2
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.2e-35 153.3 130 60.8
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.6e-35 152.9 121 66.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.6e-35 152.9 121 63.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.7e-35 152.1 121 63.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.5e-35 151.8 123 61.8
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 3.5e-35 151.8 123 64.2
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 5.9e-35 151.0 119 63.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 5.9e-35 151.0 119 63.0
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 7.8e-35 150.6 122 61.5
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 7.8e-35 150.6 119 60.5
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.0e-34 150.2 118 64.4
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.0e-34 150.2 122 65.6
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.7e-34 149.4 121 62.0
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.7e-34 149.4 118 62.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 2.9e-34 148.7 121 62.0
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 2.9e-34 148.7 121 62.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 5.0e-34 147.9 119 62.2
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-33 146.7 122 60.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-33 146.7 122 59.8
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-33 146.7 122 59.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.1e-33 146.7 122 59.8
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.5e-33 146.4 122 60.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.5e-33 146.4 122 60.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.5e-33 145.6 124 58.9
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 2.5e-33 145.6 125 60.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.5e-33 145.6 117 62.4
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 5.6e-33 144.4 122 63.9
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 7.3e-33 144.1 123 58.5
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.2e-32 143.3 124 58.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-32 142.9 123 57.7
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.1e-32 142.5 122 63.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-32 142.1 123 57.7
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-32 142.1 123 57.7
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 8.0e-32 140.6 125 56.8
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.0e-31 140.2 123 56.9
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 4.0e-31 138.3 120 55.8
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.0e-31 138.3 121 56.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.9e-31 137.1 101 69.3
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.0e-30 136.0 118 60.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.0e-30 136.0 121 60.3
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.4e-30 135.2 117 59.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.4e-30 134.8 122 55.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.3e-29 133.3 116 57.8
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.7e-29 132.9 117 56.4
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 3.7e-29 131.7 119 57.1
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.4e-28 129.8 121 54.5
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.4e-28 129.0 116 61.2
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 5.4e-28 127.9 116 55.2
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 5.4e-28 127.9 119 53.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.0e-26 123.6 118 54.2
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.9e-26 121.7 105 63.8
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 5.0e-26 121.3 118 53.4
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 3.3e-25 118.6 120 55.0
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 5.6e-25 117.9 128 53.1
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 5.6e-25 117.9 128 53.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 5.6e-25 117.9 128 53.1
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.3e-23 112.5 123 45.5
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.3e-23 112.5 123 45.5
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.5e-22 107.5 123 47.2
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 9.8e-22 107.1 119 49.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.2e-21 105.9 129 46.5
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 4.9e-21 104.8 117 49.6
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.5e-19 98.6 112 45.5
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 6.0e-19 97.8 214 33.6
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.9e-18 95.1 148 39.9
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-17 93.2 103 47.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-15 85.5 114 47.4
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.1e-12 77.0 91 50.5
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-09 66.6 81 46.9
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 7.3e-09 64.3 81 45.7
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 9.5e-09 63.9 58 60.3
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 2.1e-08 62.8 81 45.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.8e-08 62.4 77 46.8
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-08 62.4 77 46.8
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.6e-08 62.0 145 33.1
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 8.1e-08 60.8 77 46.8
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 8.1e-08 60.8 77 46.8
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 3.1e-07 58.9 40 75.0
Cre17.g717250 Chlamydomonas reinhardtii HOM05D005090 ORTHO05D006142 2.6e-06 55.8 43 55.8


User provided reference genes

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