Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.0e-249 864.8 451 100.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 6.0e-157 558.1 487 63.7
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.0e-148 529.3 436 63.1
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 7.4e-147 524.6 431 62.4
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.1e-145 519.2 426 63.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.5e-144 515.4 439 64.2
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.6e-144 514.6 475 62.3
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.9e-144 514.2 475 61.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.2e-143 513.1 484 57.6
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 8.4e-143 511.1 433 62.8
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.9e-142 510.0 435 62.3
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.4e-142 509.6 434 61.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.6e-141 506.9 479 58.5
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.6e-141 506.9 434 62.2
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.7e-141 506.1 484 62.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 6.0e-141 505.0 477 58.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-140 503.8 436 61.7
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.3e-140 503.8 480 57.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.8e-140 503.4 437 62.2
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.8e-140 503.4 441 59.6
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 5.6e-139 498.4 442 60.2
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.6e-139 498.4 434 61.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 5.6e-139 498.4 434 60.8
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.6e-138 496.9 434 61.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.8e-138 496.1 426 60.1
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 8.2e-138 494.6 433 60.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-137 494.2 478 56.9
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-136 490.3 455 58.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.0e-136 490.0 489 56.9
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 5.8e-136 488.4 437 61.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.2e-134 482.3 479 56.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.7e-133 479.6 407 62.4
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 3.9e-132 475.7 437 58.1
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.2e-130 469.9 437 58.8
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.8e-130 469.5 413 62.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.8e-130 468.8 410 61.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.4e-129 467.2 408 60.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.1e-129 465.7 410 60.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 3.4e-128 462.6 471 55.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.4e-128 462.6 435 56.1
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.0e-127 461.1 430 57.7
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.9e-127 459.5 451 57.6
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 3.8e-127 459.1 432 57.6
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.1e-126 457.6 437 59.0
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.9e-126 456.8 436 56.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 5.5e-126 455.3 468 54.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 1.2e-125 454.1 430 56.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 5.1e-124 448.7 408 57.4
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-123 447.2 433 56.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.7e-123 444.5 440 58.2
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.2e-122 443.4 439 57.6
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.1e-121 439.5 432 58.1
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 3.1e-121 439.5 454 57.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.3e-121 438.7 440 58.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.5e-120 435.6 440 58.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.5e-120 435.6 427 55.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.9e-120 435.3 446 56.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.0e-119 434.5 435 55.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 5.0e-119 432.2 449 52.3
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.4e-118 430.6 429 55.2
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.5e-118 428.7 423 56.0
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 5.5e-118 428.7 446 54.0
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.2e-117 427.6 436 55.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-117 427.2 379 61.2
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.6e-117 427.2 511 49.3
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.6e-117 427.2 463 54.0
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-117 426.8 479 51.6
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.9e-116 422.5 447 54.4
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 5.1e-116 422.2 448 53.1
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.3e-115 419.5 402 56.7
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.3e-115 419.5 437 54.9
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.7e-114 417.2 478 50.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 3.7e-114 416.0 442 53.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.8e-114 415.6 413 56.4
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 5.9e-112 408.7 445 53.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.7e-111 407.1 410 55.6
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 5.0e-111 405.6 412 54.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.1e-110 404.4 440 49.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.9e-110 403.7 409 55.5
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 5.5e-110 402.1 409 55.0
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.7e-109 399.1 408 54.7
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 4.4e-107 392.5 436 51.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.7e-107 392.1 445 51.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 9.7e-107 391.3 435 52.0
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.3e-106 391.0 422 53.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.1e-105 387.9 388 56.4
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.1e-105 386.0 342 60.2
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.5e-104 382.9 358 57.5
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.2e-103 380.2 444 50.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 5.0e-103 379.0 329 60.8
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.0e-100 371.3 443 48.1
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.4e-100 370.9 395 51.1
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.0e-99 367.1 394 54.3
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.3e-98 364.4 483 46.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 4.8e-98 362.5 444 48.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.4e-97 360.9 455 47.7
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.1e-97 359.8 426 48.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 7.0e-97 358.6 503 43.5
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.9e-95 353.2 425 47.5
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 2.5e-94 350.1 420 49.8
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 2.5e-94 350.1 402 49.8
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 9.4e-94 348.2 435 47.1
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 3.7e-90 336.3 401 49.9
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.4e-89 334.3 397 48.4
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 3.8e-87 326.2 362 50.3
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.9e-86 323.9 433 46.4
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 7.2e-86 322.0 357 49.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.2e-85 321.2 436 44.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.1e-85 320.5 487 39.4
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.3e-84 317.0 354 49.4
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 5.2e-84 315.8 375 52.0
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.5e-83 314.3 435 45.1
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.6e-83 313.5 280 60.7
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.8e-81 307.4 434 44.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 3.9e-79 299.7 202 72.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 5.6e-78 295.8 442 41.4
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.3e-78 295.4 376 47.1
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-77 294.7 376 46.8
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.1e-77 293.9 399 43.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.6e-77 293.1 431 42.5
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.0e-77 292.0 431 42.2
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.4e-76 291.2 206 70.9
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.4e-73 280.4 424 42.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.1e-73 279.6 202 67.8
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.6e-72 276.2 230 58.7
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.4e-66 255.8 386 41.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.4e-65 254.6 400 42.2
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.4e-65 254.6 397 37.5
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 8.6e-63 245.4 434 35.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.4e-57 227.3 442 35.1
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.4e-57 226.1 415 37.6
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.0e-55 220.3 439 36.4
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.5e-54 218.0 414 35.3
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.1e-53 214.2 384 37.5
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-52 211.5 160 63.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.8e-52 211.1 427 34.9
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-51 208.4 405 36.5
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.2e-49 200.3 405 35.1
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 3.9e-47 193.4 148 64.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 3.9e-47 193.4 148 64.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.5e-43 181.4 437 32.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.5e-40 170.2 165 51.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.7e-39 167.9 171 49.1
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.9e-39 166.8 168 48.8
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.3e-38 163.7 360 32.8
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.8e-36 157.9 269 41.3
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.4e-36 157.5 280 40.0
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.4e-36 157.5 280 40.0
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.5e-35 154.8 108 65.7
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.8e-35 152.9 148 52.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 4.9e-34 149.8 160 45.6
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.4e-33 147.5 263 41.8
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 9.0e-20 102.4 246 32.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.4e-17 95.1 101 53.5
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 5.9e-11 73.2 148 34.5
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.4e-09 65.9 127 30.7


User provided reference genes

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