Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.7e-44 182.2 85 100.0
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 6.2e-23 110.5 83 68.7
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 3.1e-22 108.2 94 57.4
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.6e-21 105.1 84 63.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 7.6e-21 103.6 90 62.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.8e-20 101.3 86 61.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.8e-20 101.3 87 59.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-19 99.8 91 59.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-19 99.4 88 59.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.4e-19 99.4 85 60.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.9e-19 99.0 85 60.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.9e-19 99.0 85 60.0
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.5e-19 98.6 90 56.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.2e-19 98.2 85 60.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.2e-19 97.8 84 59.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.5e-19 97.4 85 60.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.6e-18 95.9 88 55.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.7e-18 95.1 86 62.8
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.5e-18 94.7 94 53.2
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.6e-18 94.4 87 58.6
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.6e-18 94.4 78 61.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.8e-17 92.4 84 58.3
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.3e-17 92.0 82 58.5
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.7e-17 90.5 82 58.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 8.7e-17 90.1 83 57.8
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.1e-16 89.7 77 54.5
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.5e-16 89.4 88 53.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.9e-16 89.0 59 67.8
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.5e-16 88.6 70 62.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.5e-16 88.6 62 62.9
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.3e-16 88.2 74 62.2
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 3.3e-16 88.2 85 55.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.7e-16 87.4 92 54.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 9.7e-16 86.7 76 55.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 9.7e-16 86.7 73 58.9
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.2e-15 85.5 84 57.1
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.2e-15 85.5 85 55.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.2e-15 85.5 101 48.5
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.8e-15 85.1 92 55.4
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.7e-15 84.7 90 56.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-15 84.7 74 56.8
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 4.8e-15 84.3 81 55.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.8e-15 84.3 82 57.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 6.3e-15 84.0 80 55.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.3e-15 84.0 81 54.3
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.4e-14 82.8 81 56.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-14 82.0 82 57.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.4e-14 82.0 82 57.3
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.1e-14 81.3 81 55.6
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 4.1e-14 81.3 63 57.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 5.3e-14 80.9 85 51.8
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.3e-14 80.9 96 45.8
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.3e-14 80.9 82 58.5
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 9.0e-14 80.1 90 52.2
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.0e-14 80.1 64 64.1
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 9.0e-14 80.1 64 62.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.6e-13 78.6 82 54.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.4e-13 78.2 68 60.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.4e-13 78.2 68 60.3
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.5e-13 77.8 86 45.3
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.5e-13 77.8 83 55.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-13 77.8 59 61.0
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 7.7e-13 77.0 60 56.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.7e-13 77.0 86 54.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.9e-12 75.1 89 44.9
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.9e-12 75.1 75 56.0
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 3.8e-12 74.7 83 51.8
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.8e-12 74.7 80 50.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 5.0e-12 74.3 81 54.3
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 8.5e-12 73.6 97 45.4
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.5e-12 73.6 86 46.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.5e-12 73.6 82 50.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 8.5e-12 73.6 77 48.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 8.5e-12 73.6 77 48.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.1e-11 73.2 74 52.7
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.2e-11 71.6 80 48.8
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.2e-11 71.2 100 47.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 5.5e-11 70.9 61 55.7
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 7.2e-11 70.5 62 54.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 7.2e-11 70.5 99 47.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 7.2e-11 70.5 74 47.3
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.2e-10 69.7 67 50.7
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.1e-10 68.9 82 47.6
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-10 68.9 72 54.2
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.6e-10 68.2 66 48.5
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.1e-10 67.4 81 48.1
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 6.1e-10 67.4 81 48.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 7.9e-10 67.0 90 44.4
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-09 65.9 77 50.6
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-09 65.9 88 51.1
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.3e-09 65.5 60 56.7
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.0e-09 65.1 72 51.4
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.1e-09 64.3 87 48.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 6.7e-09 63.9 99 43.4
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.1e-08 63.2 102 47.1
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.1e-08 63.2 102 47.1
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.5e-08 62.8 63 57.1
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.5e-08 62.8 87 40.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.5e-08 62.0 63 58.7
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.5e-08 62.0 76 53.9
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.3e-08 61.6 82 47.6
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.3e-08 61.6 82 47.6
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 7.4e-08 60.5 78 50.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.7e-08 60.1 85 47.1
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-07 59.7 79 48.1
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-07 59.7 79 48.1
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.3e-07 59.7 79 48.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.3e-07 59.7 61 54.1
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.3e-07 59.7 73 46.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.3e-07 59.7 71 49.3
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.7e-07 59.3 69 58.0
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-07 59.3 87 43.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.2e-07 58.9 82 46.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-07 58.9 82 45.1
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-07 58.5 82 46.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-07 58.5 82 46.3
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.7e-07 58.2 94 43.6
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.7e-07 58.2 64 54.7
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.7e-07 58.2 79 48.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.7e-07 58.2 79 48.1
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.8e-07 57.8 69 44.9
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 8.2e-07 57.0 82 45.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 8.2e-07 57.0 82 45.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 8.2e-07 57.0 82 45.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.2e-07 57.0 65 44.6
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-06 56.6 66 50.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-06 55.8 83 38.6
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.4e-06 55.5 72 43.1


User provided reference genes

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