Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C56T22 Lonicera japonica HOM05D000715 ORTHO05D000024 7.5e-45 183.3 84 100.0
Lj4A110T79 Lonicera japonica HOM05D000715 ORTHO05D000024 2.5e-32 141.7 83 80.7
Dinv33771 Davidia involucrata HOM05D000715 ORTHO05D000024 4.0e-22 107.8 83 65.1
CSS0040871 Camellia sinensis var. sinensis HOM05D000715 ORTHO05D000024 4.9e-20 100.9 84 61.9
CSS0048616 Camellia sinensis var. sinensis HOM05D000715 ORTHO05D000024 4.9e-20 100.9 84 61.9
TAR629G3217 Trochodendron aralioides HOM05D000715 ORTHO05D000024 8.3e-20 100.1 83 62.7
Rhsim10G0038600 Rhododendron simsii HOM05D000715 ORTHO05D000024 1.1e-19 99.8 83 57.8
CiPaw.04G016400 Carya illinoinensis HOM05D000715 ORTHO05D000024 6.0e-18 94.0 83 53.0
Dinv11522 Davidia involucrata HOM05D000715 ORTHO05D000024 2.3e-17 92.0 83 56.6
Lju41C11G7 Lonicera japonica HOM05D000715 ORTHO05D000024 8.6e-17 90.1 83 55.4
Potri.017G084600 Populus trichocarpa HOM05D000715 ORTHO05D000024 1.1e-16 89.7 84 51.2
Prupe.3G266200 Prunus persica HOM05D000715 ORTHO05D000024 1.5e-16 89.4 83 50.6
TAR371G0559 Trochodendron aralioides HOM05D000715 ORTHO05D000024 1.5e-16 89.4 83 56.6
Nn4g23198 Nelumbo nucifera HOM05D000715 ORTHO05D000024 3.3e-16 88.2 77 55.8
Ciclev10019949m.g Citrus clementina HOM05D000715 ORTHO05D000024 4.3e-16 87.8 81 48.1
SalBow1G6393 Salvia bowleyana HOM05D000715 ORTHO05D000024 4.3e-16 87.8 75 56.0
Nn3g17266 Nelumbo nucifera HOM05D000715 ORTHO05D000024 5.6e-16 87.4 83 54.2
CiPaw.03G025400 Carya illinoinensis HOM05D000715 ORTHO05D000024 1.2e-15 86.3 83 49.4
QL02p082478 Quercus lobata HOM05D000715 ORTHO05D000024 1.6e-15 85.9 83 50.6
RcHm_v2.0_Chr2g0167771 Rosa chinensis HOM05D000715 ORTHO05D000024 1.6e-15 85.9 83 50.6
Aqoxy3G03423 Aquilegia oxysepala HOM05D000715 ORTHO05D000024 2.8e-15 85.1 83 50.6
CSS0026500 Camellia sinensis var. sinensis HOM05D000715 ORTHO05D000024 2.8e-15 85.1 81 54.3
Duzib264G0349 Durio zibethinus HOM05D000715 ORTHO05D000024 4.7e-15 84.3 83 53.0
Actinidia38770 Actinidia chinensis HOM05D000715 ORTHO05D000024 8.1e-15 83.6 83 53.0
Actinidia38790 Actinidia chinensis HOM05D000715 ORTHO05D000024 8.1e-15 83.6 83 53.0
Thecc.04G083800 Theobroma cacao HOM05D000715 ORTHO05D000024 8.1e-15 83.6 83 54.2
Manes.14G079000 Manihot esculenta HOM05D000715 ORTHO05D000024 1.4e-14 82.8 83 49.4
Duzib147G1585 Durio zibethinus HOM05D000715 ORTHO05D000024 1.8e-14 82.4 79 53.2
Oeu015423.1 Olea europaea HOM05D000715 ORTHO05D000024 2.4e-14 82.0 81 53.1
Cpa.g.sc111.11 Carica papaya HOM05D000715 ORTHO05D000024 4.0e-14 81.3 80 48.8
Cfa007571 Carpinus fangiana HOM05D000715 ORTHO05D000024 4.0e-14 81.3 77 53.2
MBI05_g10777_MAGBIO Magnolia biondii HOM05D000715 ORTHO05D000024 5.2e-14 80.9 83 45.8
TAR622G0103 Trochodendron aralioides HOM05D000715 ORTHO05D000024 5.2e-14 80.9 77 53.2
CAN.G1103.9 Capsicum annuum HOM05D000715 ORTHO05D000024 6.8e-14 80.5 81 53.1
Potri.004G121800 Populus trichocarpa HOM05D000715 ORTHO05D000024 6.8e-14 80.5 81 48.1
Sabra17G0074500 Salix brachista HOM05D000715 ORTHO05D000024 6.8e-14 80.5 83 49.4
Thecc.04G083700 Theobroma cacao HOM05D000715 ORTHO05D000024 6.8e-14 80.5 83 53.0
MD00G1125100 Malus domestica HOM05D000715 ORTHO05D000024 8.9e-14 80.1 81 48.1
Atru.chr8.186 Acer truncatum HOM05D000715 ORTHO05D000024 1.2e-13 79.7 83 45.8
FAN05G1602 Fragaria x ananassa HOM05D000715 ORTHO05D000024 1.5e-13 79.3 83 48.2
FAN05G2059 Fragaria x ananassa HOM05D000715 ORTHO05D000024 1.5e-13 79.3 83 48.2
Oeu019467.1 Olea europaea HOM05D000715 ORTHO05D000024 1.5e-13 79.3 81 53.1
Ciclev10011556m.g Citrus clementina HOM05D000715 ORTHO05D000024 2.0e-13 79.0 83 48.2
FAN02G2712 Fragaria x ananassa HOM05D000715 ORTHO05D000024 2.0e-13 79.0 83 48.2
FAN09G4386 Fragaria x ananassa HOM05D000715 ORTHO05D000024 2.0e-13 79.0 83 48.2
MD13G1070600 Malus domestica HOM05D000715 ORTHO05D000024 2.0e-13 79.0 81 51.9
vmacro18190 Vaccinium macrocarpon HOM05D000715 ORTHO05D000024 2.0e-13 79.0 83 50.6
Rhsim08G0069900 Rhododendron simsii HOM05D000715 ORTHO05D000024 2.6e-13 78.6 83 49.4
Sabra04G0091000 Salix brachista HOM05D000715 ORTHO05D000024 2.6e-13 78.6 75 48.0
PGSC0003DMG400025129 Solanum tuberosum HOM05D000715 ORTHO05D000024 2.6e-13 78.6 82 51.2
Haze_14515 Corylus avellana HOM05D000715 ORTHO05D000024 4.4e-13 77.8 77 49.4
Gohir.A11G070000 Gossypium hirsutum HOM05D000715 ORTHO05D000024 4.4e-13 77.8 83 53.0
Gohir.D11G073900 Gossypium hirsutum HOM05D000715 ORTHO05D000024 4.4e-13 77.8 83 53.0
CSS0034004 Camellia sinensis var. sinensis HOM05D000715 ORTHO05D000024 7.6e-13 77.0 81 54.3
Gorai.007G079300 Gossypium raimondii HOM05D000715 ORTHO05D000024 9.9e-13 76.6 83 51.8
Nitab4.5_0008692g0010 Nicotiana tabacum HOM05D000715 ORTHO05D000024 9.9e-13 76.6 79 54.4
TWI60G1576 Tripterygium wilfordii HOM05D000715 ORTHO05D000024 9.9e-13 76.6 83 49.4
QL10p017159 Quercus lobata HOM05D000715 ORTHO05D000024 1.3e-12 76.3 83 43.4
Prupe.1G276000 Prunus persica HOM05D000715 ORTHO05D000024 1.7e-12 75.9 81 48.1
Nitab4.5_0000274g0250 Nicotiana tabacum HOM05D000715 ORTHO05D000024 2.2e-12 75.5 79 54.4
FvH4_6g48270 Fragaria vesca HOM05D000715 ORTHO05D000024 2.9e-12 75.1 83 47.0
FAN14G0745 Fragaria x ananassa HOM05D000715 ORTHO05D000024 2.9e-12 75.1 83 47.0
Gorai.008G193700 Gossypium raimondii HOM05D000715 ORTHO05D000024 2.9e-12 75.1 83 48.2
CiPaw.11G045500 Carya illinoinensis HOM05D000715 ORTHO05D000024 3.8e-12 74.7 77 49.4
Duzib068G0179 Durio zibethinus HOM05D000715 ORTHO05D000024 6.4e-12 73.9 84 47.6
Gohir.A12G178100 Gossypium hirsutum HOM05D000715 ORTHO05D000024 6.4e-12 73.9 81 48.1
Solyc02g067230.3 Solanum lycopersicum HOM05D000715 ORTHO05D000024 6.4e-12 73.9 82 50.0
Sopen02g016410 Solanum pennellii HOM05D000715 ORTHO05D000024 6.4e-12 73.9 82 50.0
COL.COLO4_08637 Corchorus olitorius HOM05D000715 ORTHO05D000024 8.4e-12 73.6 83 43.4
Haze_11999 Corylus avellana HOM05D000715 ORTHO05D000024 8.4e-12 73.6 77 50.6
MD16G1071400 Malus domestica HOM05D000715 ORTHO05D000024 8.4e-12 73.6 81 49.4
TWI34G0912 Tripterygium wilfordii HOM05D000715 ORTHO05D000024 8.4e-12 73.6 77 50.6
Gohir.D12G180500 Gossypium hirsutum HOM05D000715 ORTHO05D000024 1.1e-11 73.2 83 47.0
Peaxi162Scf00129g10011 Petunia axillaris HOM05D000715 ORTHO05D000024 1.1e-11 73.2 81 48.1
TWI32G0507 Tripterygium wilfordii HOM05D000715 ORTHO05D000024 1.1e-11 73.2 83 47.0
Duzib205G1231 Durio zibethinus HOM05D000715 ORTHO05D000024 1.4e-11 72.8 84 47.6
Manes.01G092100 Manihot esculenta HOM05D000715 ORTHO05D000024 1.4e-11 72.8 83 47.0
Cc07_g03470 Coffea canephora HOM05D000715 ORTHO05D000024 4.1e-11 71.2 77 49.4
Haze_07317 Corylus avellana HOM05D000715 ORTHO05D000024 4.1e-11 71.2 83 44.6
Thecc.03G090100 Theobroma cacao HOM05D000715 ORTHO05D000024 4.1e-11 71.2 82 47.6
Dinv38720 Davidia involucrata HOM05D000715 ORTHO05D000024 7.1e-11 70.5 81 54.3
CiPaw.06G086300 Carya illinoinensis HOM05D000715 ORTHO05D000024 1.2e-10 69.7 81 44.4
Cc04_g16510 Coffea canephora HOM05D000715 ORTHO05D000024 1.2e-10 69.7 79 45.6
RcHm_v2.0_Chr4g0439611 Rosa chinensis HOM05D000715 ORTHO05D000024 1.2e-10 69.7 80 46.2
Cfa018933 Carpinus fangiana HOM05D000715 ORTHO05D000024 2.1e-10 68.9 77 46.8
COL.COLO4_08435 Corchorus olitorius HOM05D000715 ORTHO05D000024 2.1e-10 68.9 84 45.2
CANSAT64G2040 Cannabis sativa HOM05D000715 ORTHO05D000024 2.7e-10 68.6 83 42.2
CANSAT80G2880 Cannabis sativa HOM05D000715 ORTHO05D000024 2.7e-10 68.6 81 45.7
Cfa008968 Carpinus fangiana HOM05D000715 ORTHO05D000024 2.7e-10 68.6 77 46.8
Atru.chr11.1769 Acer truncatum HOM05D000715 ORTHO05D000024 3.5e-10 68.2 80 46.2
Oeu002092.1 Olea europaea HOM05D000715 ORTHO05D000024 3.5e-10 68.2 79 45.6
FAN07G0856 Fragaria x ananassa HOM05D000715 ORTHO05D000024 4.6e-10 67.8 80 46.2
MBI02_g42048_MAGBIO Magnolia biondii HOM05D000715 ORTHO05D000024 4.6e-10 67.8 83 47.0
FvH4_4g31210 Fragaria vesca HOM05D000715 ORTHO05D000024 6.0e-10 67.4 80 45.0
PSO478G3373 Papaver somniferum HOM05D000715 ORTHO05D000024 6.0e-10 67.4 77 49.4
FAN12G2237 Fragaria x ananassa HOM05D000715 ORTHO05D000024 7.8e-10 67.0 80 45.0
PSO017G6310 Papaver somniferum HOM05D000715 ORTHO05D000024 7.8e-10 67.0 77 48.1
FAN22G0153 Fragaria x ananassa HOM05D000715 ORTHO05D000024 1.7e-09 65.9 80 46.2
Nitab4.5_0000568g0020 Nicotiana tabacum HOM05D000715 ORTHO05D000024 1.7e-09 65.9 81 48.1
CiPaw.05G133500 Carya illinoinensis HOM05D000715 ORTHO05D000024 2.3e-09 65.5 59 54.2
Hma1.2p1_1936F.1_g308240 Hydrangea macrophylla HOM05D000715 ORTHO05D000024 3.0e-09 65.1 58 51.7
Glyma.17G101000 Glycine max HOM05D000715 ORTHO05D000024 5.1e-09 64.3 81 42.0
Prupe.5G194600 Prunus persica HOM05D000715 ORTHO05D000024 5.1e-09 64.3 83 42.2
QL03p068694 Quercus lobata HOM05D000715 ORTHO05D000024 5.1e-09 64.3 59 49.2
ClCG10G015210 Citrullus lanatus HOM05D000715 ORTHO05D000024 6.6e-09 63.9 79 41.8
FAN17G2154 Fragaria x ananassa HOM05D000715 ORTHO05D000024 6.6e-09 63.9 80 45.0
Rhsim08G0154300 Rhododendron simsii HOM05D000715 ORTHO05D000024 6.6e-09 63.9 55 60.0
COL.COLO4_37774 Corchorus olitorius HOM05D000715 ORTHO05D000024 8.7e-09 63.5 84 45.2
Nitab4.5_0002980g0040 Nicotiana tabacum HOM05D000715 ORTHO05D000024 8.7e-09 63.5 81 46.9
Eucgr.I01947 Eucalyptus grandis HOM05D000715 ORTHO05D000024 1.1e-08 63.2 83 44.6
Actinidia37623 Actinidia chinensis HOM05D000715 ORTHO05D000024 1.5e-08 62.8 77 46.8
Eucgr.K02480 Eucalyptus grandis HOM05D000715 ORTHO05D000024 1.5e-08 62.8 81 43.2
Hma1.2p1_2779F.1_g328330 Hydrangea macrophylla HOM05D000715 ORTHO05D000024 1.5e-08 62.8 58 50.0
GSVIVG01007992001 Vitis vinifera HOM05D000715 ORTHO05D000024 1.5e-08 62.8 60 45.0
vmacro17536 Vaccinium macrocarpon HOM05D000715 ORTHO05D000024 1.9e-08 62.4 60 55.0
MD14G1201600 Malus domestica HOM05D000715 ORTHO05D000024 2.5e-08 62.0 81 43.2
Actinidia04884 Actinidia chinensis HOM05D000715 ORTHO05D000024 3.3e-08 61.6 81 48.1
Sed0023411 Sechium edule HOM05D000715 ORTHO05D000024 3.3e-08 61.6 83 42.2
VMungo1383G0234 Vigna mungo HOM05D000715 ORTHO05D000024 4.3e-08 61.2 80 45.0
CDE08G0718 Ceratophyllum demersum HOM05D000715 ORTHO05D000024 7.3e-08 60.5 80 41.2
ClCG06G016160 Citrullus lanatus HOM05D000715 ORTHO05D000024 7.3e-08 60.5 84 40.5
Dinv16658 Davidia involucrata HOM05D000715 ORTHO05D000024 9.6e-08 60.1 77 41.6
Manes.06G091600 Manihot esculenta HOM05D000715 ORTHO05D000024 1.2e-07 59.7 70 44.3
VMungo1215G0120 Vigna mungo HOM05D000715 ORTHO05D000024 1.2e-07 59.7 81 44.4
arahy.Tifrunner.gnm1.ann1.B68HGA Arachis hypogaea HOM05D000715 ORTHO05D000024 2.1e-07 58.9 84 36.9
CsaV3_1G002390 Cucumis sativus L. HOM05D000715 ORTHO05D000024 4.7e-07 57.8 83 39.8
Oeu047006.1 Olea europaea HOM05D000715 ORTHO05D000024 4.7e-07 57.8 80 41.2
Sabra10G0127400 Salix brachista HOM05D000715 ORTHO05D000024 4.7e-07 57.8 62 50.0
MSTRG.4433 Avicennia marina HOM05D000715 ORTHO05D000024 6.2e-07 57.4 60 48.3
Glyma.05G025900 Glycine max HOM05D000715 ORTHO05D000024 6.2e-07 57.4 82 37.8
Oeu047289.1 Olea europaea HOM05D000715 ORTHO05D000024 6.2e-07 57.4 80 40.0
TWI15G1180 Tripterygium wilfordii HOM05D000715 ORTHO05D000024 6.2e-07 57.4 83 42.2
Manes.05G103100 Manihot esculenta HOM05D000715 ORTHO05D000024 8.1e-07 57.0 79 40.5
arahy.Tifrunner.gnm1.ann1.02S8F1 Arachis hypogaea HOM05D000715 ORTHO05D000024 1.1e-06 56.6 84 35.7
Hund02642 Selenicereus undatus HOM05D000715 ORTHO05D000024 1.1e-06 56.6 84 42.9
Sc04g0002690 Simmondsia chinensis HOM05D000715 ORTHO05D000024 1.1e-06 56.6 86 41.9
BcaB01g00915 Brassica carinata HOM05D000715 ORTHO05D000024 1.4e-06 56.2 81 40.7
Glyma.13G062500 Glycine max HOM05D000715 ORTHO05D000024 1.4e-06 56.2 81 39.5
Peaxi162Scf00013g00429 Petunia axillaris HOM05D000715 ORTHO05D000024 1.4e-06 56.2 75 41.3
RcHm_v2.0_Chr7g0181561 Rosa chinensis HOM05D000715 ORTHO05D000024 1.4e-06 56.2 77 42.9
Solyc02g088070.3 Solanum lycopersicum HOM05D000715 ORTHO05D000024 1.4e-06 56.2 81 44.4
Sopen02g032780 Solanum pennellii HOM05D000715 ORTHO05D000024 1.4e-06 56.2 81 44.4
Carub.0005s1359 Capsella rubella HOM05D000715 ORTHO05D000024 1.8e-06 55.8 87 43.7
Ca_27942_v3 Cicer arietinum L. HOM05D000715 ORTHO05D000024 1.8e-06 55.8 73 42.5
Hma1.2p1_0795F.1_g218950 Hydrangea macrophylla HOM05D000715 ORTHO05D000024 1.8e-06 55.8 61 42.6
Sed0011956 Sechium edule HOM05D000715 ORTHO05D000024 1.8e-06 55.8 75 38.7
arahy.Tifrunner.gnm1.ann1.Q28BRX Arachis hypogaea HOM05D000715 ORTHO05D000024 3.1e-06 55.1 77 40.3
Phvul.003G189300 Phaseolus vulgaris HOM05D000715 ORTHO05D000024 4.0e-06 54.7 81 42.0
AL5G26730 Arabidopsis lyrata HOM05D000715 ORTHO05D000024 5.2e-06 54.3 88 46.6
arahy.Tifrunner.gnm1.ann1.52XQ2N Arachis hypogaea HOM05D000715 ORTHO05D000024 5.2e-06 54.3 82 39.0
Lalb_Chr10g0098311 Lupinus albus HOM05D000715 ORTHO05D000024 5.2e-06 54.3 61 45.9
MELO3C017178.2 Cucumis melo HOM05D000715 ORTHO05D000024 6.9e-06 53.9 83 37.3
PGR004G1734 Punica granatum HOM05D000715 ORTHO05D000024 6.9e-06 53.9 75 41.3
PGSC0003DMG400001330 Solanum tuberosum HOM05D000715 ORTHO05D000024 6.9e-06 53.9 82 45.1
Glyma.19G023200 Glycine max HOM05D000715 ORTHO05D000024 9.0e-06 53.5 81 37.0


User provided reference genes

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