Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C542G2 Lonicera japonica HOM05D000161 ORTHO05D000111 3.7e-73 278.5 182 100.0
Lj4C606G11 Lonicera japonica HOM05D000161 ORTHO05D000111 2.9e-17 92.8 96 88.5
Lj4C606T11 Lonicera japonica HOM05D000161 ORTHO05D000111 2.9e-17 92.8 96 88.5
Lj4C606T13 Lonicera japonica HOM05D000161 ORTHO05D000111 1.7e-09 67.0 43 69.8
Actinidia00677 Actinidia chinensis HOM05D000161 ORTHO05D000111 4.9e-09 65.5 45 60.0
Lj4P606T26 Lonicera japonica HOM05D000161 ORTHO05D000111 4.9e-09 65.5 77 48.1
CSS0012986 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D000111 6.4e-09 65.1 98 40.8
CSS0041782 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D000111 6.4e-09 65.1 45 66.7
Lj4C605T2 Lonicera japonica HOM05D000161 ORTHO05D000111 6.4e-09 65.1 77 48.1
Prupe.1G005900 Prunus persica HOM05D000161 ORTHO05D000111 6.4e-09 65.1 69 52.2
CSS0022729 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D000111 8.4e-09 64.7 98 40.8
Prupe.1G006000 Prunus persica HOM05D000161 ORTHO05D000111 8.4e-09 64.7 45 66.7
MD07G1046200 Malus domestica HOM05D000161 ORTHO05D000111 1.1e-08 64.3 69 52.2
CiPaw.07G103100 Carya illinoinensis HOM05D000161 ORTHO05D000111 2.4e-08 63.2 96 67.7
Haze_04839 Corylus avellana HOM05D000161 ORTHO05D000111 2.4e-08 63.2 45 62.2
CSS0031700 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D000111 3.2e-08 62.8 97 42.3
MD02G1279600 Malus domestica HOM05D000161 ORTHO05D000111 3.2e-08 62.8 43 65.1
Prupe.1G005300 Prunus persica HOM05D000161 ORTHO05D000111 4.2e-08 62.4 45 68.9
Haze_04838 Corylus avellana HOM05D000161 ORTHO05D000111 5.5e-08 62.0 45 60.0
QL12p024502 Quercus lobata HOM05D000161 ORTHO05D000111 5.5e-08 62.0 43 62.8
TWI09G0628 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 5.5e-08 62.0 45 64.4
PSO384G4000 Papaver somniferum HOM05D000161 ORTHO05D000111 7.1e-08 61.6 94 36.2
Prupe.2G041000 Prunus persica HOM05D000161 ORTHO05D000111 7.1e-08 61.6 69 49.3
Actinidia09169 Actinidia chinensis HOM05D000161 ORTHO05D000111 9.3e-08 61.2 95 35.8
Haze_04837 Corylus avellana HOM05D000161 ORTHO05D000111 1.2e-07 60.8 45 57.8
PSO339G5800 Papaver somniferum HOM05D000161 ORTHO05D000111 1.2e-07 60.8 96 34.4
Oeu037636.1 Olea europaea HOM05D000161 ORTHO05D000111 1.6e-07 60.5 43 62.8
Prupe.1G005800 Prunus persica HOM05D000161 ORTHO05D000111 1.6e-07 60.5 45 66.7
RcHm_v2.0_Chr4g0385991 Rosa chinensis HOM05D000161 ORTHO05D000111 1.6e-07 60.5 43 65.1
CiPaw.07G102800 Carya illinoinensis HOM05D000161 ORTHO05D000111 2.1e-07 60.1 96 65.6
Dinv33016 Davidia involucrata HOM05D000161 ORTHO05D000111 2.1e-07 60.1 45 57.8
Dinv33018 Davidia involucrata HOM05D000161 ORTHO05D000111 2.1e-07 60.1 45 57.8
Lj4C605T7 Lonicera japonica HOM05D000161 ORTHO05D000111 2.1e-07 60.1 77 46.8
QL09p041050 Quercus lobata HOM05D000161 ORTHO05D000111 2.1e-07 60.1 97 66.0
QL09p041072 Quercus lobata HOM05D000161 ORTHO05D000111 2.1e-07 60.1 97 66.0
Potri.014G133200 Populus trichocarpa HOM05D000161 ORTHO05D000111 2.7e-07 59.7 45 62.2
Actinidia00680 Actinidia chinensis HOM05D000161 ORTHO05D000111 3.5e-07 59.3 43 58.1
Actinidia00681 Actinidia chinensis HOM05D000161 ORTHO05D000111 3.5e-07 59.3 45 57.8
CiPaw.07G103000 Carya illinoinensis HOM05D000161 ORTHO05D000111 3.5e-07 59.3 96 64.6
MD07G1032900 Malus domestica HOM05D000161 ORTHO05D000111 3.5e-07 59.3 45 62.2
Actinidia00682 Actinidia chinensis HOM05D000161 ORTHO05D000111 4.6e-07 58.9 45 57.8
FAN12G4315 Fragaria x ananassa HOM05D000161 ORTHO05D000111 4.6e-07 58.9 45 60.0
MD02G1285700 Malus domestica HOM05D000161 ORTHO05D000111 4.6e-07 58.9 69 50.7
QL12p024410 Quercus lobata HOM05D000161 ORTHO05D000111 4.6e-07 58.9 94 70.2
QL12p030678 Quercus lobata HOM05D000161 ORTHO05D000111 4.6e-07 58.9 45 51.1
QL12p030860 Quercus lobata HOM05D000161 ORTHO05D000111 4.6e-07 58.9 45 51.1
TWI59G0596 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 4.6e-07 58.9 95 36.8
TWI59G1111 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 4.6e-07 58.9 96 34.4
Gohir.A08G117200 Gossypium hirsutum HOM05D000161 ORTHO05D000111 6.0e-07 58.5 45 55.6
PSO339G3280 Papaver somniferum HOM05D000161 ORTHO05D000111 6.0e-07 58.5 96 33.3
Prupe.2G037000 Prunus persica HOM05D000161 ORTHO05D000111 6.0e-07 58.5 45 57.8
Sabra14G0099500 Salix brachista HOM05D000161 ORTHO05D000111 6.0e-07 58.5 45 60.0
TPR.G25266 Trifolium pratense HOM05D000161 ORTHO05D000111 6.0e-07 58.5 43 62.8
TWI36G1253 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 6.0e-07 58.5 43 60.5
Atru.chr5.1238 Acer truncatum HOM05D000161 ORTHO05D000111 7.9e-07 58.2 45 53.3
Atru.chr5.1242 Acer truncatum HOM05D000161 ORTHO05D000111 7.9e-07 58.2 45 55.6
Duzib212G1034 Durio zibethinus HOM05D000161 ORTHO05D000111 7.9e-07 58.2 43 58.1
MD07G1033000 Malus domestica HOM05D000161 ORTHO05D000111 7.9e-07 58.2 69 49.3
MD07G1048000 Malus domestica HOM05D000161 ORTHO05D000111 7.9e-07 58.2 69 46.4
GSVIVG01028382001 Vitis vinifera HOM05D000161 ORTHO05D000111 7.9e-07 58.2 110 31.8
Haze_01240 Corylus avellana HOM05D000161 ORTHO05D000111 1.0e-06 57.8 43 60.5
Gohir.D08G138000 Gossypium hirsutum HOM05D000161 ORTHO05D000111 1.0e-06 57.8 45 55.6
MD04G1005600 Malus domestica HOM05D000161 ORTHO05D000111 1.0e-06 57.8 43 60.5
Atru.chr3.2693 Acer truncatum HOM05D008053 ORTHO05D009808 1.3e-06 57.4 45 57.8
Gorai.004G141300 Gossypium raimondii HOM05D000161 ORTHO05D000111 1.3e-06 57.4 45 55.6
MD07G1047400 Malus domestica HOM05D000161 ORTHO05D000111 1.3e-06 57.4 69 46.4
PGR044G0321 Punica granatum HOM05D000161 ORTHO05D000111 1.3e-06 57.4 45 57.8
Thecc.04G281100 Theobroma cacao HOM05D000161 ORTHO05D000111 1.3e-06 57.4 45 55.6
CiPaw.08G099300 Carya illinoinensis HOM05D000161 ORTHO05D000111 1.8e-06 57.0 45 51.1
Thecc.04G281400 Theobroma cacao HOM05D000161 ORTHO05D000111 1.8e-06 57.0 45 57.8
TWI14G0052 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 1.8e-06 57.0 95 34.7
Actinidia00679 Actinidia chinensis HOM05D000161 ORTHO05D000111 2.3e-06 56.6 45 55.6
Manes.09G028700 Manihot esculenta HOM05D000161 ORTHO05D000111 2.3e-06 56.6 40 60.0
Prupe.2G041100 Prunus persica HOM05D000161 ORTHO05D000111 2.3e-06 56.6 69 49.3
QL06p008168 Quercus lobata HOM05D000161 ORTHO05D000111 2.3e-06 56.6 43 55.8
Thecc.04G281200 Theobroma cacao HOM05D000161 ORTHO05D000111 2.3e-06 56.6 93 60.2
TWI53G1079 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 2.3e-06 56.6 45 62.2
TWI73G0034 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 2.3e-06 56.6 42 64.3
Cpa.g.sc16.125 Carica papaya HOM05D000161 ORTHO05D000111 3.0e-06 56.2 45 60.0
CiPaw.08G098500 Carya illinoinensis HOM05D000161 ORTHO05D000111 3.0e-06 56.2 45 51.1
Duzib212G0349 Durio zibethinus HOM05D000161 ORTHO05D000111 3.0e-06 56.2 42 57.1
FAN17G0590 Fragaria x ananassa HOM05D000161 ORTHO05D000111 3.0e-06 56.2 43 60.5
FAN22G1043 Fragaria x ananassa HOM05D000161 ORTHO05D000111 3.0e-06 56.2 43 60.5
Manes.04G038700 Manihot esculenta HOM05D000161 ORTHO05D000111 3.0e-06 56.2 95 34.7
Prupe.2G037400 Prunus persica HOM05D000161 ORTHO05D000111 3.0e-06 56.2 45 55.6
Prupe.2G040200 Prunus persica HOM05D000161 ORTHO05D000111 3.0e-06 56.2 69 47.8
Prupe.2G040400 Prunus persica HOM05D000161 ORTHO05D000111 3.0e-06 56.2 69 43.5
QL03p013951 Quercus lobata HOM05D000161 ORTHO05D000111 3.0e-06 56.2 45 55.6
QL12p024541 Quercus lobata HOM05D000161 ORTHO05D000111 3.0e-06 56.2 43 60.5
TWI36G0367 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 3.0e-06 56.2 43 58.1
TWI53G1551 Tripterygium wilfordii HOM05D000161 ORTHO05D000111 3.0e-06 56.2 45 62.2
Atru.chr5.902 Acer truncatum HOM05D000161 ORTHO05D000111 3.9e-06 55.8 45 55.6
COL.COLO4_13900 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.9e-06 55.8 45 60.0
COL.COLO4_34699 Corchorus olitorius HOM05D002249 ORTHO05D002443 3.9e-06 55.8 45 60.0
FvH4_7g03270 Fragaria vesca HOM05D000161 ORTHO05D000111 3.9e-06 55.8 67 46.3
FAN06G5042 Fragaria x ananassa HOM05D000161 ORTHO05D000111 3.9e-06 55.8 67 46.3
Manes.05G066200 Manihot esculenta HOM05D000161 ORTHO05D000111 3.9e-06 55.8 45 57.8
Manes.11G124300 Manihot esculenta HOM05D000161 ORTHO05D000111 3.9e-06 55.8 42 59.5
Haze_02760 Corylus avellana HOM05D000161 ORTHO05D000111 5.1e-06 55.5 45 53.3
Gohir.A02G048100 Gossypium hirsutum HOM05D000161 ORTHO05D000111 5.1e-06 55.5 45 55.6
Manes.11G124200 Manihot esculenta HOM05D000161 ORTHO05D000111 5.1e-06 55.5 42 59.5
Manes.11G124400 Manihot esculenta HOM05D000161 ORTHO05D000111 5.1e-06 55.5 42 57.1
PSO339G5750 Papaver somniferum HOM05D000161 ORTHO05D000111 5.1e-06 55.5 96 33.3
TAR362G0342 Trochodendron aralioides HOM05D000161 ORTHO05D000111 5.1e-06 55.5 45 55.6
Actinidia00043 Actinidia chinensis HOM05D000161 ORTHO05D000111 6.7e-06 55.1 44 52.3
FvH4_4g00540 Fragaria vesca HOM05D000161 ORTHO05D000111 6.7e-06 55.1 43 58.1
Glyma.08G305200 Glycine max HOM05D000161 ORTHO05D000111 6.7e-06 55.1 43 60.5
QL06p006532 Quercus lobata HOM05D000161 ORTHO05D000111 6.7e-06 55.1 45 53.3
QL06p021264 Quercus lobata HOM05D000161 ORTHO05D000111 6.7e-06 55.1 43 55.8
Thecc.07G104400 Theobroma cacao HOM05D000161 ORTHO05D000111 6.7e-06 55.1 68 42.6
Haze_02759 Corylus avellana HOM05D000161 ORTHO05D000111 8.7e-06 54.7 45 53.3
Gorai.005G059000 Gossypium raimondii HOM05D000161 ORTHO05D000111 8.7e-06 54.7 45 53.3
Hma1.2p1_0399F.1_g143990 Hydrangea macrophylla HOM05D000161 ORTHO05D000111 8.7e-06 54.7 43 60.5
Manes.04G038800 Manihot esculenta HOM05D000161 ORTHO05D000111 8.7e-06 54.7 95 58.9
Manes.11G123800 Manihot esculenta HOM05D000161 ORTHO05D000111 8.7e-06 54.7 45 53.3
PSO339G0371 Papaver somniferum HOM05D000161 ORTHO05D000111 8.7e-06 54.7 94 66.0
Phvul.006G025200 Phaseolus vulgaris HOM05D000161 ORTHO05D000111 8.7e-06 54.7 43 60.5
Prupe.8G255200 Prunus persica HOM05D000161 ORTHO05D000111 8.7e-06 54.7 50 56.0
QL12p024418 Quercus lobata HOM05D000161 ORTHO05D000111 8.7e-06 54.7 96 32.3
TAR629G1183 Trochodendron aralioides HOM05D000161 ORTHO05D000111 8.7e-06 54.7 45 53.3


User provided reference genes

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