Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 2.0e-90 337.4 366 100.0
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 2.4e-80 303.9 154 98.7
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 3.1e-43 180.6 158 59.5
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 5.2e-43 179.9 155 60.0
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 5.2e-43 179.9 155 60.0
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 5.2e-43 179.9 155 60.0
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 8.9e-43 179.1 148 60.8
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.5e-42 178.3 154 60.4
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 4.4e-42 176.8 155 58.7
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 4.4e-42 176.8 155 59.4
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.7e-41 174.9 154 59.1
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.7e-41 174.9 152 58.6
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 6.4e-41 172.9 148 60.1
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 2.0e-39 167.9 152 57.2
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 2.7e-39 167.5 153 56.9
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 3.5e-39 167.2 151 58.3
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 3.5e-39 167.2 153 54.9
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 7.8e-39 166.0 153 58.2
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 3.0e-38 164.1 152 55.9
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 1.5e-37 161.8 150 55.3
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 3.3e-37 160.6 149 57.7
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 7.3e-37 159.5 149 57.0
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 9.5e-37 159.1 149 57.7
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 1.6e-36 158.3 151 56.3
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 2.1e-36 157.9 149 55.7
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 2.8e-36 157.5 150 55.3
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 4.7e-36 156.8 154 53.2
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.7e-36 156.8 152 54.6
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.7e-36 156.8 152 54.6
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 8.0e-36 156.0 152 55.3
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 1.1e-35 155.6 152 55.3
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 1.4e-35 155.2 153 52.9
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 1.4e-35 155.2 152 54.6
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 3.1e-35 154.1 150 53.3
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 3.1e-35 154.1 126 57.1
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 3.1e-35 154.1 150 51.3
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 5.2e-35 153.3 136 58.1
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 6.8e-35 152.9 148 50.7
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 1.2e-34 152.1 154 51.9
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 2.0e-34 151.4 154 53.9
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 3.4e-34 150.6 153 53.6
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 4.4e-34 150.2 154 50.6
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 4.4e-34 150.2 154 51.9
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.4e-34 150.2 147 55.8
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 5.8e-34 149.8 149 51.0
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 5.8e-34 149.8 149 51.0
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 5.8e-34 149.8 139 56.1
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 2.2e-33 147.9 137 57.7
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 2.2e-33 147.9 139 56.8
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 3.7e-33 147.1 154 51.3
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.9e-33 146.7 156 51.9
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.9e-33 146.7 156 51.9
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 4.9e-33 146.7 153 52.9
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 1.1e-32 145.6 155 50.3
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.1e-32 145.6 133 54.1
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 1.9e-32 144.8 150 52.7
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 2.4e-32 144.4 137 56.9
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 2.4e-32 144.4 149 55.7
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 2.4e-32 144.4 149 52.3
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 3.2e-32 144.1 149 52.3
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 3.2e-32 144.1 149 52.3
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 5.4e-32 143.3 153 51.6
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 9.2e-32 142.5 149 51.7
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.2e-31 142.1 148 53.4
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 2.7e-31 141.0 152 50.7
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 2.7e-31 141.0 152 50.7
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 2.7e-31 141.0 151 51.7
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 3.5e-31 140.6 148 52.7
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 3.5e-31 140.6 151 51.7
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 4.6e-31 140.2 132 53.0
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 6.0e-31 139.8 139 51.8
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 6.0e-31 139.8 152 51.3
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 1.0e-30 139.0 148 52.0
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.3e-30 138.7 129 53.5
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 1.3e-30 138.7 148 52.0
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 1.7e-30 138.3 149 52.3
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 1.7e-30 138.3 152 48.0
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 3.0e-30 137.5 137 53.3
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 3.9e-30 137.1 159 49.7
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 5.1e-30 136.7 132 56.1
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 5.1e-30 136.7 128 53.1
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 5.1e-30 136.7 147 54.4
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 6.6e-30 136.3 150 46.7
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 8.6e-30 136.0 136 57.4
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 1.5e-29 135.2 155 49.7
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 1.5e-29 135.2 149 49.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.9e-29 134.8 136 56.6
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 3.3e-29 134.0 126 56.3
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.3e-29 133.7 147 51.0
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 7.3e-29 132.9 136 51.5
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 7.3e-29 132.9 152 48.0
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 1.2e-28 132.1 147 49.0
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 1.6e-28 131.7 149 50.3
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 2.8e-28 131.0 153 49.0
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 4.7e-28 130.2 153 47.1
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 1.8e-27 128.3 153 50.3
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 1.8e-27 128.3 151 50.3
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 3.1e-27 127.5 151 49.7
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 5.2e-27 126.7 147 47.6
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 6.8e-27 126.3 133 52.6
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 6.8e-27 126.3 125 53.6
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 8.9e-27 125.9 133 49.6
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 8.9e-27 125.9 126 50.8
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 1.5e-26 125.2 148 47.3
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 2.6e-26 124.4 153 49.0
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 2.6e-26 124.4 145 51.7
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 3.4e-26 124.0 150 46.7
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 3.4e-26 124.0 150 46.7
Oeu030006.1 Olea europaea HOM05D016129 ORTHO05D003798 3.4e-26 124.0 154 44.8
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 4.4e-26 123.6 152 47.4
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 5.8e-26 123.2 140 50.7
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 7.6e-26 122.9 132 49.2
Dinv41693 Davidia involucrata HOM05D000029 ORTHO05D003879 9.9e-26 122.5 125 54.4
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 1.3e-25 122.1 141 48.2
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 1.7e-25 121.7 150 48.0
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 1.7e-25 121.7 154 45.5
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 3.7e-25 120.6 135 51.1
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 4.9e-25 120.2 126 50.0
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 1.9e-24 118.2 128 50.8
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 1.9e-24 118.2 144 47.9
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 1.9e-24 118.2 147 46.9
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 1.9e-24 118.2 140 50.0
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 3.2e-24 117.5 150 47.3
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 3.2e-24 117.5 156 48.1
SGA_v2.0_scaffold149G36603 Striga asiatica HOM05D000029 ORTHO05D003879 4.1e-24 117.1 137 48.2
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 3.5e-23 114.0 126 51.6
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 2.3e-22 111.3 135 48.9
ATR0152G022 Amborella trichopoda HOM05D000029 ORTHO05D003879 8.6e-22 109.4 126 46.0
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 1.9e-21 108.2 152 41.4
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 3.3e-21 107.5 145 44.8
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 4.3e-21 107.1 112 50.9
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 4.3e-21 107.1 151 44.4
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 7.3e-21 106.3 106 51.9
HanXRQChr04g0107431 Helianthus annuus HOM05D000029 ORTHO05D003879 9.6e-21 105.9 157 47.8
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 1.2e-20 105.5 143 46.2
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 2.8e-20 104.4 152 41.4
HanXRQChr04g0107451 Helianthus annuus HOM05D000029 ORTHO05D003879 4.7e-20 103.6 158 46.2
HanXRQChr04g0107461 Helianthus annuus HOM05D000029 ORTHO05D003879 1.1e-19 102.4 151 47.7
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 4.0e-19 100.5 147 43.5
VMungo0464G0087 Vigna mungo HOM05D000029 ORTHO05D003879 6.8e-19 99.8 133 43.6
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 2.0e-18 98.2 145 41.4
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 4.4e-18 97.1 132 46.2
CARHR033850 Cardamine hirsuta HOM05D000029 ORTHO05D003879 6.0e-15 86.7 90 53.3
PSO170G5730 Papaver somniferum HOM05D000029 ORTHO05D003879 3.0e-14 84.3 143 39.9
Zm00001eb408490 Zea mays HOM05D000029 ORTHO05D003879 3.0e-14 84.3 159 35.2
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 1.1e-13 82.4 84 50.0
Nn5g27753 Nelumbo nucifera HOM05D000029 ORTHO05D003879 1.5e-13 82.0 150 37.3
VMungo0464G0008 Vigna mungo HOM05D000029 ORTHO05D003879 2.5e-13 81.3 135 37.8
SEGI_36696 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 3.1e-11 74.3 129 36.4
CiPaw.07G040300 Carya illinoinensis HOM05D000029 ORTHO05D001395 1.5e-10 72.0 131 38.2
EL10As1g23044 Beta vulgaris HOM05D000029 ORTHO05D003879 2.0e-10 71.6 145 35.9
Lj4P498T26 Lonicera japonica HOM05D017543 ORTHO05D234824 4.4e-10 70.5 35 94.3
PSO782G2115 Papaver somniferum HOM05D000029 ORTHO05D003879 5.8e-10 70.1 63 54.0
SEGI_30584 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 4.9e-09 67.0 129 34.9
RcHm_v2.0_Chr1g0316231 Rosa chinensis HOM05D062739 ORTHO05D003879 1.9e-08 65.1 102 36.3
SEGI_14999 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 4.2e-08 63.9 150 32.7
Medtr4g130920 Medicago truncatula HOM05D000094 ORTHO05D004969 5.4e-08 63.5 142 32.4
RcHm_v2.0_Chr1g0316271 Rosa chinensis HOM05D062739 ORTHO05D003879 1.2e-07 62.4 102 35.3
A06p40690 Brassica napus HOM05D001042 ORTHO05D007836 1.6e-07 62.0 114 37.7
BraA06t26990Z Brassica rapa HOM05D001042 ORTHO05D007836 1.6e-07 62.0 114 37.7
Glyma.08G174500 Glycine max HOM05D000029 ORTHO05D002162 2.1e-07 61.6 96 37.5
SEGI_35620 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 2.1e-07 61.6 137 29.9
BcaB05g21903 Brassica carinata HOM05D001042 ORTHO05D002657 2.7e-07 61.2 115 36.5
TPR.G24870 Trifolium pratense HOM05D000094 ORTHO05D004969 2.7e-07 61.2 145 31.7
SEGI_14389 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 3.5e-07 60.8 131 34.4
FvH4_1g01000 Fragaria vesca HOM05D000094 ORTHO05D004969 6.0e-07 60.1 103 38.8
Migut.M00363 Erythranthe guttata HOM05D000029 ORTHO05D001395 7.9e-07 59.7 96 38.5
Mapoly1026s0001 Marchantia polymorpha HOM05D000106 ORTHO05D011578 7.9e-07 59.7 118 34.7
SGA_v2.0_scaffold121G33091 Striga asiatica HOM05D000029 ORTHO05D001395 7.9e-07 59.7 140 35.7
BcaC07g41409 Brassica carinata HOM05D001506 ORTHO05D000455 1.0e-06 59.3 114 36.0
HanXRQChr03g0068811 Helianthus annuus HOM05D000033 ORTHO05D019512 1.0e-06 59.3 141 35.5
Pp3c3_19490 Physcomitrium patens HOM05D000570 ORTHO05D001174 1.3e-06 58.9 131 32.8
Dinv44208 Davidia involucrata HOM05D001042 ORTHO05D007836 1.7e-06 58.5 138 34.8
vmacro05783 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.7e-06 58.5 54 51.9
HPP92_021666 Vanilla planifolia HOM05D000029 ORTHO05D001395 1.7e-06 58.5 117 32.5
AUR62023560 Chenopodium quinoa HOM05D000029 ORTHO05D006810 3.9e-06 57.4 127 33.9
Actinidia36399 Actinidia chinensis HOM05D000029 ORTHO05D001395 5.1e-06 57.0 116 33.6
Thhalv10012579m.g Eutrema salsugineum HOM05D001042 ORTHO05D002657 5.1e-06 57.0 120 34.2
DCAR_021458 Daucus carota HOM05D000029 ORTHO05D001395 6.6e-06 56.6 95 37.9
Sp6g41130 Schrenkiella parvula HOM05D001042 ORTHO05D002657 8.7e-06 56.2 120 33.3
SGA_v2.0_scaffold269G46247 Striga asiatica HOM05D000029 ORTHO05D001395 8.7e-06 56.2 126 35.7


User provided reference genes

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