Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 2545.8 1330 100.0
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1768.1 1376 70.0
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1697.2 898 97.9
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1650.2 1374 65.5
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1602.8 1331 65.1
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1593.6 1363 64.8
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1589.3 1395 63.3
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1584.3 1358 64.7
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1573.1 1319 65.6
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1572.0 1224 68.7
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1569.7 1362 63.9
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1569.3 1380 63.2
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1567.4 1409 63.0
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1567.0 1366 63.5
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1545.4 1353 62.8
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1537.3 1360 62.5
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1527.3 1370 62.0
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1527.3 1372 61.4
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1523.1 1337 62.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1520.4 1366 62.0
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1515.4 1360 61.2
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1513.4 1378 61.5
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1509.6 1366 60.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1509.6 1360 61.1
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1506.1 1377 60.5
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1505.7 1380 61.2
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1502.6 1357 60.9
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1497.3 1351 60.0
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1495.3 1367 60.6
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1368 60.6
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1484.5 1358 60.4
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1483.0 1375 60.0
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1478.0 1364 60.5
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1477.6 1377 60.3
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1472.6 1375 59.4
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1472.2 1354 61.0
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1470.3 1376 60.4
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1468.8 1352 59.8
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1467.6 1350 61.3
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1467.2 1408 59.7
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1461.8 1380 59.3
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1455.7 1379 59.0
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1455.3 1318 59.5
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1451.8 1369 59.5
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1444.5 1337 60.6
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1438.7 1446 57.2
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1433.3 1242 62.5
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1428.3 1329 60.4
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1423.7 1351 58.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1420.2 1386 57.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1417.1 1370 58.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1384.8 1342 58.4
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1380.9 1369 57.0
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1376.3 1320 58.9
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1374.0 1366 57.5
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1364.7 1275 58.4
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1364.0 1374 56.5
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1361.3 1364 56.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1361.3 1346 58.3
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1360.1 1335 58.9
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1348.6 1366 56.3
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1346.6 1371 57.3
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1344.3 1374 57.2
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1335.9 1340 57.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1328.5 1301 57.7
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1303.5 1305 57.2
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1292.3 1325 55.3
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1291.2 1319 55.6
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1289.6 1314 55.3
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1285.4 1161 61.0
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1278.8 1293 56.2
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1275.8 1293 56.1
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1275.0 1302 55.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1275.0 1374 54.6
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1274.2 1301 55.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1269.6 1322 54.5
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1268.8 1302 55.4
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1268.1 1304 55.3
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1265.4 1326 55.2
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1263.1 1309 55.7
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1255.4 1325 54.1
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1246.5 1175 60.3
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1236.1 1363 53.6
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1233.0 1068 64.1
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1202.2 1171 58.3
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1197.2 1195 56.7
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1171.4 1276 52.4
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1156.0 1330 50.2
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1147.1 1332 49.6
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1129.8 1235 53.4
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1078.2 1022 58.2
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.9e-297 1025.4 988 58.7
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 2.2e-287 993.0 1003 56.7
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 8.2e-287 991.1 1262 47.1
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.7e-263 912.5 1177 47.0
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.5e-240 837.4 942 53.8
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 6.4e-231 805.4 1369 39.7
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.2e-226 788.9 1365 38.2
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.2e-226 788.9 1365 38.2
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 2.4e-222 776.9 983 49.2
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 5.4e-222 775.8 811 53.3
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 2.2e-215 753.8 824 53.9
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.2e-213 748.0 531 71.6
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.1e-203 714.9 1412 35.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.3e-164 584.3 439 67.7
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.7e-162 578.2 349 88.8
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 8.8e-156 555.8 871 42.1
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.0e-136 491.5 1640 29.5
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.8e-132 478.4 592 49.7
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.0e-120 436.8 439 55.6
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 7.3e-110 403.3 551 49.7
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.1e-101 375.2 968 32.3
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 4.2e-97 360.9 478 48.1
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.2e-90 338.6 225 74.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.3e-78 298.1 390 46.4
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 6.4e-74 283.9 278 56.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 6.0e-72 277.3 493 42.0
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.6e-67 261.9 963 27.5
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 3.2e-49 201.8 236 53.4
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.8e-45 188.7 164 61.0
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.8e-37 162.2 215 47.4
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 8.3e-29 134.0 121 60.3
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 5.3e-28 131.3 88 72.7
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 4.2e-25 121.7 99 63.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.0e-23 115.2 85 67.1
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.3e-18 99.4 64 71.9
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 8.6e-18 97.4 68 67.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.9e-17 96.3 100 47.0
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.1e-16 91.3 79 53.2
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 5.6e-09 68.2 54 63.0
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 9.5e-09 67.4 43 74.4
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.3e-07 62.8 71 49.3


User provided reference genes

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