Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C41G7 Lonicera japonica HOM05D003992 ORTHO05D004329 4.1e-201 704.5 355 100.0
Dinv36071 Davidia involucrata HOM05D003992 ORTHO05D004329 4.7e-40 169.5 399 35.1
Nitab4.5_0009105g0010 Nicotiana tabacum HOM05D003992 ORTHO05D004329 6.2e-40 169.1 289 43.6
Cfa018143 Carpinus fangiana HOM05D003992 ORTHO05D004329 8.1e-40 168.7 297 41.1
QL02p008027 Quercus lobata HOM05D003992 ORTHO05D004329 8.1e-40 168.7 263 44.5
PGSC0003DMG400005140 Solanum tuberosum HOM05D003992 ORTHO05D004329 1.1e-39 168.3 288 43.1
COL.COLO4_26331 Corchorus olitorius HOM05D003992 ORTHO05D004329 3.1e-39 166.8 296 40.2
Nitab4.5_0000110g0560 Nicotiana tabacum HOM05D003992 ORTHO05D004329 6.8e-39 165.6 289 42.9
Dinv39410 Davidia involucrata HOM05D003992 ORTHO05D004329 8.9e-39 165.2 265 43.4
Prupe.1G380700 Prunus persica HOM05D003992 ORTHO05D004329 1.2e-38 164.9 286 41.6
Haze_17980 Corylus avellana HOM05D003992 ORTHO05D004329 1.5e-38 164.5 297 40.4
MD08G1034300 Malus domestica HOM05D003992 ORTHO05D004329 1.5e-38 164.5 296 41.2
GSVIVG01009695001 Vitis vinifera HOM05D003992 ORTHO05D004329 1.5e-38 164.5 404 35.4
Sopen04g033820 Solanum pennellii HOM05D003992 ORTHO05D004329 2.6e-38 163.7 289 41.9
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 7.6e-38 162.2 294 43.2
Duzib041G0176 Durio zibethinus HOM05D003992 ORTHO05D004329 2.2e-37 160.6 262 42.7
Solyc04g080240.4 Solanum lycopersicum HOM05D003992 ORTHO05D004329 2.2e-37 160.6 289 41.5
CAN.G1126.53 Capsicum annuum HOM05D003992 ORTHO05D004329 3.7e-37 159.8 333 39.3
ECA232G3773 Erigeron canadensis HOM05D003992 ORTHO05D004329 3.7e-37 159.8 263 42.2
RcHm_v2.0_Chr6g0300861 Rosa chinensis HOM05D003992 ORTHO05D004329 3.7e-37 159.8 295 39.3
Actinidia15319 Actinidia chinensis HOM05D003992 ORTHO05D004329 4.9e-37 159.5 343 39.1
TAR376G0310 Trochodendron aralioides HOM05D003992 ORTHO05D004329 4.9e-37 159.5 270 42.2
Manes.15G188300 Manihot esculenta HOM05D003992 ORTHO05D004329 6.4e-37 159.1 262 41.6
CiPaw.15G077300 Carya illinoinensis HOM05D003992 ORTHO05D004329 8.3e-37 158.7 262 42.4
FAN27G1736 Fragaria x ananassa HOM05D003992 ORTHO05D004329 3.2e-36 156.8 294 40.1
MD15G1031200 Malus domestica HOM05D003992 ORTHO05D004329 3.2e-36 156.8 292 40.4
Ciclev10000013m.g Citrus clementina HOM05D003992 ORTHO05D004329 4.1e-36 156.4 296 36.8
FvH4_2g39920 Fragaria vesca HOM05D003992 ORTHO05D004329 4.1e-36 156.4 326 38.0
Duzib116G0511 Durio zibethinus HOM05D003992 ORTHO05D004329 9.2e-36 155.2 269 39.8
CiPaw.16G055800 Carya illinoinensis HOM05D003992 ORTHO05D004329 1.6e-35 154.5 296 37.2
Duzib093G1886 Durio zibethinus HOM05D003992 ORTHO05D004329 3.5e-35 153.3 262 40.1
Nn5g29561 Nelumbo nucifera HOM05D003992 ORTHO05D004329 3.5e-35 153.3 267 41.6
PGR083G2608 Punica granatum HOM05D003992 ORTHO05D004329 3.5e-35 153.3 266 42.1
MSTRG.1284 Avicennia marina HOM05D003992 ORTHO05D004329 7.8e-35 152.1 277 40.1
Actinidia22553 Actinidia chinensis HOM05D003992 ORTHO05D004329 1.0e-34 151.8 299 38.8
Lsat_1_v5_gn_4_117960 Lactuca sativa HOM05D003992 ORTHO05D004329 1.7e-34 151.0 281 39.5
Thecc.08G025200 Theobroma cacao HOM05D003992 ORTHO05D004329 6.6e-34 149.1 261 41.4
Gohir.A01G116100 Gossypium hirsutum HOM05D003992 ORTHO05D004329 1.1e-33 148.3 295 39.0
CANSAT25G0428 Cannabis sativa HOM05D003992 ORTHO05D004329 2.5e-33 147.1 305 37.7
Gohir.D01G104400 Gossypium hirsutum HOM05D003992 ORTHO05D004329 2.5e-33 147.1 261 41.4
Rhsim07G0237600 Rhododendron simsii HOM05D003992 ORTHO05D004329 3.3e-33 146.7 288 40.3
TWI36G1026 Tripterygium wilfordii HOM05D003992 ORTHO05D004329 4.3e-33 146.4 268 38.4
FAN20G1022 Fragaria x ananassa HOM05D003992 ORTHO05D004329 1.2e-32 144.8 321 36.1
Gohir.A01G116200 Gossypium hirsutum HOM05D003992 ORTHO05D004329 1.6e-32 144.4 261 40.2
Gorai.002G128500 Gossypium raimondii HOM05D003992 ORTHO05D004329 1.6e-32 144.4 295 38.0
Nn1g05048 Nelumbo nucifera HOM05D003992 ORTHO05D004329 1.6e-32 144.4 266 39.8
Eucgr.F01902 Eucalyptus grandis HOM05D003992 ORTHO05D004329 2.1e-32 144.1 259 39.4
FAN15G3622 Fragaria x ananassa HOM05D003992 ORTHO05D004329 2.1e-32 144.1 278 38.8
DCAR_020969 Daucus carota HOM05D003992 ORTHO05D004329 2.8e-32 143.7 262 39.7
Migut.C00714 Erythranthe guttata HOM05D003992 ORTHO05D004329 3.6e-32 143.3 264 36.7
Glyma.17G249900 Glycine max HOM05D003992 ORTHO05D004329 3.6e-32 143.3 269 39.0
Gorai.002G128600 Gossypium raimondii HOM05D003992 ORTHO05D004329 1.4e-31 141.4 295 36.9
Gohir.D01G104600 Gossypium hirsutum HOM05D003992 ORTHO05D004329 4.0e-31 139.8 295 36.9
SalBow8G0890 Salvia bowleyana HOM05D003992 ORTHO05D004329 6.8e-31 139.0 266 38.3
Cpa.g.sc64.81 Carica papaya HOM05D003992 ORTHO05D004329 2.6e-30 137.1 173 49.7
PSO541G1688 Papaver somniferum HOM05D003992 ORTHO05D004329 2.6e-30 137.1 265 39.6
HanXRQChr16g0498501 Helianthus annuus HOM05D003992 ORTHO05D004329 4.4e-30 136.3 261 40.6
TAR628G0682 Trochodendron aralioides HOM05D003992 ORTHO05D004329 5.8e-30 136.0 265 38.5
CSS0034936 Camellia sinensis var. sinensis HOM05D003992 ORTHO05D004329 7.6e-30 135.6 144 52.1
PSO675G6685 Papaver somniferum HOM05D003992 ORTHO05D004329 9.9e-30 135.2 291 37.1
Phvul.001G015100 Phaseolus vulgaris HOM05D003992 ORTHO05D004329 9.9e-30 135.2 274 37.6
Lalb_Chr22g0355521 Lupinus albus HOM05D003992 ORTHO05D004329 1.7e-29 134.4 197 43.7
Lj1g0007825 Lotus japonicus HOM05D003992 ORTHO05D004329 2.9e-29 133.7 260 37.7
arahy.Tifrunner.gnm1.ann1.L0KAFE Arachis hypogaea HOM05D003992 ORTHO05D004329 6.4e-29 132.5 315 36.5
arahy.Tifrunner.gnm1.ann1.P6P9CF Arachis hypogaea HOM05D003992 ORTHO05D004329 6.4e-29 132.5 315 36.5
DCAR_019527 Daucus carota HOM05D003992 ORTHO05D004329 1.1e-28 131.7 256 36.7
Glyma.04G032700 Glycine max HOM05D003992 ORTHO05D004329 1.4e-28 131.3 261 37.9
Lalb_Chr14g0369191 Lupinus albus HOM05D003992 ORTHO05D004329 1.9e-28 131.0 264 37.5
Oeu016746.1 Olea europaea HOM05D003992 ORTHO05D004329 4.2e-28 129.8 377 30.5
VMungo1309G1132 Vigna mungo HOM05D003992 ORTHO05D004329 4.2e-28 129.8 260 36.9
Potri.002G262300 Populus trichocarpa HOM05D003992 ORTHO05D004329 5.4e-28 129.4 292 36.3
Lj5g0026255 Lotus japonicus HOM05D003992 ORTHO05D004329 1.2e-27 128.3 269 38.7
Glyma.06G032600 Glycine max HOM05D003992 ORTHO05D004329 1.6e-27 127.9 261 37.5
Phvul.009G057400 Phaseolus vulgaris HOM05D003992 ORTHO05D004329 2.7e-27 127.1 260 37.3
AUR62038829 Chenopodium quinoa HOM05D003992 ORTHO05D004329 3.5e-27 126.7 314 35.4
SGA_v2.0_scaffold48G18076 Striga asiatica HOM05D003992 ORTHO05D004329 6.0e-27 125.9 257 37.4
AUR62034944 Chenopodium quinoa HOM05D003992 ORTHO05D004329 7.8e-27 125.6 314 35.0
VMungo0647G1645 Vigna mungo HOM05D003992 ORTHO05D004329 7.8e-27 125.6 260 36.5
Cc10_g03010 Coffea canephora HOM05D003992 ORTHO05D004329 1.3e-26 124.8 260 39.6
EL10Ac1g01750 Beta vulgaris HOM05D003992 ORTHO05D004329 2.3e-26 124.0 282 35.8
Lalb_Chr24g0399001 Lupinus albus HOM05D003992 ORTHO05D004329 2.3e-26 124.0 256 38.7
Aqoxy5G01665 Aquilegia oxysepala HOM05D003992 ORTHO05D004329 3.0e-26 123.6 271 36.5
Psat0s3731g0120 Pisum sativum HOM05D003992 ORTHO05D004329 3.9e-26 123.2 262 36.6
Sc02g0006250 Simmondsia chinensis HOM05D003992 ORTHO05D004329 3.9e-26 123.2 263 36.5
vmacro04519 Vaccinium macrocarpon HOM05D003992 ORTHO05D004329 5.1e-26 122.9 259 37.5
Lalb_Chr11g0062361 Lupinus albus HOM05D003992 ORTHO05D004329 1.1e-25 121.7 262 34.7
Medtr1g022145 Medicago truncatula HOM05D003992 ORTHO05D004329 1.1e-25 121.7 261 37.9
TPR.G12352 Trifolium pratense HOM05D003992 ORTHO05D004329 1.5e-25 121.3 259 35.9
MBI16_g37748_MAGBIO Magnolia biondii HOM05D003992 ORTHO05D004329 7.3e-25 119.0 263 37.3
TPR.G29754 Trifolium pratense HOM05D003992 ORTHO05D004329 1.6e-24 117.9 238 37.0
MELO3C010934.2 Cucumis melo HOM05D003992 ORTHO05D004329 2.1e-24 117.5 262 36.3
CsaV3_2G028620 Cucumis sativus L. HOM05D003992 ORTHO05D004329 2.1e-24 117.5 262 38.2
Sc15g0006910 Simmondsia chinensis HOM05D003992 ORTHO05D004329 4.8e-24 116.3 302 35.8
Hund26579 Selenicereus undatus HOM05D003992 ORTHO05D004329 8.1e-24 115.5 351 31.3
ClCG08G015190 Citrullus lanatus HOM05D003992 ORTHO05D004329 2.4e-23 114.0 283 35.3
Ah.11g043110 Amaranthus hybridus HOM05D003992 ORTHO05D004329 6.9e-23 112.5 268 34.3
Sed0028038 Sechium edule HOM05D003992 ORTHO05D004329 6.9e-23 112.5 281 33.8
Sabra02G0199100 Salix brachista HOM05D003992 ORTHO05D004329 1.2e-22 111.7 179 41.3
Sed0014403 Sechium edule HOM05D003992 ORTHO05D004329 7.6e-22 109.0 255 36.9
ECA247G1453 Erigeron canadensis HOM05D003992 ORTHO05D004329 1.7e-21 107.8 245 33.5
Atru.chr13.498 Acer truncatum HOM05D003992 ORTHO05D004329 2.2e-21 107.5 277 34.7
HanXRQChr16g0507581 Helianthus annuus HOM05D003992 ORTHO05D004329 2.2e-21 107.5 212 35.8
unitig_85.g27238 Utricularia gibba HOM05D003992 ORTHO05D004329 2.2e-21 107.5 246 35.0
Sp2g07700 Schrenkiella parvula HOM05D003992 ORTHO05D004329 1.1e-20 105.1 304 33.6
CARHR181120 Cardamine hirsuta HOM05D003992 ORTHO05D004329 1.4e-20 104.8 196 37.2
AL8G17880 Arabidopsis lyrata HOM05D003992 ORTHO05D004329 7.1e-20 102.4 257 36.2
Carub.0008s0582 Capsella rubella HOM05D003992 ORTHO05D004329 1.6e-19 101.3 257 36.2
Thhalv10003129m.g Eutrema salsugineum HOM05D003992 ORTHO05D004329 1.6e-19 101.3 252 38.5
THA.LOC104814161 Tarenaya hassleriana HOM05D003992 ORTHO05D004329 1.0e-18 98.6 262 35.1
Aa31LG9G13060 Aethionema arabicum HOM05D003992 ORTHO05D004329 1.3e-18 98.2 260 34.6
AT5G42950 Arabidopsis thaliana HOM05D003992 ORTHO05D004329 1.3e-18 98.2 205 38.0
CDE02G3040 Ceratophyllum demersum HOM05D003992 ORTHO05D004329 1.3e-18 98.2 202 37.1
THA.LOC104814159 Tarenaya hassleriana HOM05D003992 ORTHO05D004329 1.7e-18 97.8 262 35.1
ATR0733G229 Amborella trichopoda HOM05D003992 ORTHO05D004329 2.3e-18 97.4 262 32.8
BcaB07g31029 Brassica carinata HOM05D003992 ORTHO05D004329 1.9e-17 94.4 294 34.0
Actinidia29828 Actinidia chinensis HOM05D003992 ORTHO05D004329 9.6e-17 92.0 213 39.0
HPP92_024930 Vanilla planifolia HOM05D003992 ORTHO05D004329 1.6e-16 91.3 314 30.6
A09p20120 Brassica napus HOM05D003992 ORTHO05D004329 6.2e-16 89.4 296 33.1
BraA09t37625Z Brassica rapa HOM05D003992 ORTHO05D004329 6.2e-16 89.4 296 33.1
SGA_v2.0_scaffold24G10232 Striga asiatica HOM05D003992 ORTHO05D004329 6.2e-16 89.4 250 33.6
BcaC04g21954 Brassica carinata HOM05D003992 ORTHO05D004329 1.4e-15 88.2 297 32.7
C09p25510 Brassica napus HOM05D003992 ORTHO05D004329 1.4e-15 88.2 297 32.7
BolC9t55453H Brassica oleracea HOM05D003992 ORTHO05D004329 1.4e-15 88.2 297 32.7
CSS0024556 Camellia sinensis var. sinensis HOM05D003992 ORTHO05D004329 2.4e-15 87.4 195 40.0
CDE01G0175 Ceratophyllum demersum HOM05D003992 ORTHO05D004329 9.0e-15 85.5 133 41.4
HPP92_024939 Vanilla planifolia HOM05D003992 ORTHO05D004329 3.4e-14 83.6 160 38.8
Psat6g006520 Pisum sativum HOM05D003992 ORTHO05D004329 4.2e-12 76.6 191 35.6
Zm00001eb299670 Zea mays HOM05D003992 ORTHO05D004329 7.1e-12 75.9 262 29.0
Aqoxy6G01079 Aquilegia oxysepala HOM05D003992 ORTHO05D004329 1.2e-11 75.1 239 31.4
Lsat_1_v5_gn_3_132401 Lactuca sativa HOM05D003992 ORTHO05D004329 6.0e-11 72.8 96 49.0
HPP92_018700 Vanilla planifolia HOM05D003992 ORTHO05D004329 7.9e-11 72.4 190 31.1
Lj4C785T10 Lonicera japonica HOM05D003992 ORTHO05D004329 1.6e-08 64.7 37 70.3
Ca_06587_v3 Cicer arietinum L. HOM05D003992 ORTHO05D004329 3.7e-08 63.5 99 36.4
TAR628G0639 Trochodendron aralioides HOM05D000542 ORTHO05D000202 2.4e-07 60.8 36 72.2


User provided reference genes

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