Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 4.9e-165 584.3 281 100.0
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.9e-140 502.7 286 83.9
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.4e-140 502.3 288 84.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.3e-137 491.5 288 82.6
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.1e-135 486.9 288 81.6
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 5.3e-135 484.6 289 82.0
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.2e-134 483.4 288 80.9
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.2e-134 483.4 288 80.2
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.3e-133 479.9 288 81.6
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.7e-133 479.6 322 74.5
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 4.2e-132 474.9 288 78.1
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 9.3e-132 473.8 288 79.9
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.2e-131 473.4 288 79.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 6.0e-131 471.1 288 78.8
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 7.9e-131 470.7 288 78.5
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 1.8e-130 469.5 288 78.8
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 3.0e-130 468.8 288 79.9
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 3.0e-130 468.8 286 78.3
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 3.9e-130 468.4 288 78.5
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 3.9e-130 468.4 288 78.8
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 3.9e-130 468.4 286 79.4
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 3.9e-130 468.4 288 78.1
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.5e-129 466.5 285 80.4
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.5e-129 466.5 288 77.1
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.9e-129 466.1 288 78.1
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 2.5e-129 465.7 288 78.8
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.5e-129 465.7 288 78.8
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.3e-129 465.3 288 76.7
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.3e-129 465.3 288 76.7
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 3.3e-129 465.3 288 78.8
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 1.3e-128 463.4 289 78.9
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 2.1e-128 462.6 288 79.2
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.1e-128 462.6 286 76.6
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.8e-128 462.2 289 78.5
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.8e-128 462.2 289 78.5
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.8e-128 462.2 289 78.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.8e-128 461.5 288 78.1
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 4.8e-128 461.5 288 76.7
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 6.2e-128 461.1 288 77.4
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 8.1e-128 460.7 288 77.4
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 1.1e-127 460.3 286 79.0
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.4e-127 459.1 288 76.4
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.9e-127 457.6 288 75.3
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 6.9e-127 457.6 288 77.8
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 9.0e-127 457.2 289 78.2
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 1.5e-126 456.4 289 76.1
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.0e-126 456.1 288 77.1
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 3.4e-126 455.3 286 75.5
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 4.5e-126 454.9 288 77.1
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 5.8e-126 454.5 286 77.3
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 5.8e-126 454.5 288 77.1
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 9.9e-126 453.8 289 77.5
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 9.9e-126 453.8 286 76.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.3e-125 453.4 294 75.5
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.3e-125 453.4 288 76.7
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.7e-125 453.0 289 76.5
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.7e-125 453.0 294 75.5
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.7e-125 453.0 294 75.5
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.7e-125 453.0 288 76.0
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.7e-125 453.0 288 74.3
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.9e-125 452.2 294 75.2
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-125 452.2 289 76.1
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.9e-125 452.2 268 80.2
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 3.8e-125 451.8 312 71.2
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 3.8e-125 451.8 288 76.4
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 4.9e-125 451.4 288 75.3
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 6.4e-125 451.1 288 76.4
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.1e-124 450.3 288 76.4
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 1.4e-124 449.9 289 75.4
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.4e-124 449.9 288 75.7
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 1.9e-124 449.5 289 76.1
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.4e-124 449.1 289 75.8
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.4e-124 449.1 288 76.0
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.2e-123 446.8 289 75.8
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.2e-123 446.8 286 76.9
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.6e-123 446.4 298 73.5
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.6e-123 446.4 287 76.3
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 2.1e-123 446.0 289 75.1
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 2.7e-123 445.7 288 73.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 2.7e-123 445.7 289 75.8
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.5e-123 445.3 289 75.8
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.5e-123 445.3 288 75.7
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 7.9e-123 444.1 286 75.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.3e-122 443.4 289 74.4
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 6.7e-122 441.0 289 74.4
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 6.7e-122 441.0 289 74.4
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 8.7e-122 440.7 289 74.7
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 8.7e-122 440.7 289 74.7
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 8.7e-122 440.7 289 74.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-121 440.3 289 74.4
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-121 440.3 289 74.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.1e-121 440.3 289 74.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.5e-121 439.9 289 74.7
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-121 439.9 289 74.7
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.5e-121 439.9 289 74.4
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.5e-121 439.9 282 74.8
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 2.5e-121 439.1 289 74.0
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.5e-121 439.1 289 74.0
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.3e-121 438.7 270 77.8
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 4.3e-121 438.3 289 74.0
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.6e-121 438.0 289 73.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 5.6e-121 438.0 289 74.0
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 7.4e-121 437.6 288 75.0
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 9.6e-121 437.2 289 74.0
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 1.3e-120 436.8 288 74.7
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 2.1e-120 436.0 270 77.8
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 3.7e-120 435.3 289 74.0
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 3.7e-120 435.3 289 74.0
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.8e-120 434.9 312 70.2
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.8e-120 434.9 312 70.2
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 6.2e-120 434.5 289 73.7
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 8.2e-120 434.1 292 73.3
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 6.9e-119 431.0 289 71.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 7.6e-118 427.6 289 70.9
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.7e-117 426.4 292 74.0
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.2e-117 426.0 286 72.4
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.2e-117 426.0 323 65.9
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-117 425.6 287 72.8
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 7.1e-116 421.0 268 76.1
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 3.5e-115 418.7 287 71.4
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 7.9e-115 417.5 283 71.0
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.3e-114 416.8 287 73.2
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.9e-113 412.9 283 71.7
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.3e-113 411.8 287 72.5
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 2.1e-112 409.5 287 71.8
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.8e-112 409.1 289 70.2
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.5e-110 403.3 271 73.1
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.0e-110 402.9 283 69.3
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 4.5e-110 401.7 265 75.1
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 4.5e-110 401.7 283 69.3
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 9.3e-108 394.0 355 58.9
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 2.7e-107 392.5 319 65.2
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 6.1e-107 391.3 266 73.3
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 6.1e-107 391.3 236 79.7
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.0e-106 389.0 244 77.9
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 8.7e-106 387.5 285 66.7
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.1e-103 380.6 238 76.1
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 2.4e-103 379.4 275 71.6
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 6.9e-103 377.9 288 66.7
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.6e-102 375.9 288 66.3
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 3.2e-100 369.0 240 75.0
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.2e-100 368.6 238 76.1
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.7e-98 361.3 288 63.2
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 8.8e-98 360.9 297 64.0
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.5e-97 360.1 288 62.8
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.5e-97 360.1 244 72.5
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 9.1e-95 350.9 263 67.7
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 3.4e-94 349.0 271 68.3
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.5e-92 342.8 283 63.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 9.1e-87 324.3 197 77.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 7.5e-81 304.7 253 59.7
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 4.1e-79 298.9 242 57.9
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 5.5e-68 261.9 148 84.5
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 8.0e-67 258.1 242 54.1
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.2e-65 254.2 233 53.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.4e-63 247.3 148 79.1
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 3.4e-57 226.1 146 75.3
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.6e-51 206.1 130 75.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.3e-44 181.8 198 51.5
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.9e-37 159.5 135 54.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 5.6e-28 129.0 86 72.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.6e-25 120.2 237 34.2
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.1e-19 100.5 263 29.3
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 3.8e-16 89.7 59 71.2
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.1e-14 84.0 124 37.9
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.4e-09 66.6 69 56.5
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.4e-07 60.5 50 62.0


User provided reference genes

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