Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 5.6e-90 335.9 517 100.0
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.8e-40 171.4 131 60.3
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.8e-40 171.4 131 60.3
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 1.7e-38 164.9 129 56.6
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 1.7e-38 164.9 132 56.8
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 3.0e-35 154.1 132 53.8
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 6.7e-35 152.9 127 56.7
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.1e-34 152.1 130 53.1
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 7.4e-34 149.4 132 51.5
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 9.6e-34 149.1 132 52.3
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 2.1e-33 147.9 132 52.3
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 2.8e-33 147.5 133 51.9
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 2.8e-33 147.5 133 51.9
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 6.2e-33 146.4 132 50.8
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 6.2e-33 146.4 132 50.0
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 8.2e-33 146.0 133 51.9
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 1.1e-32 145.6 129 61.2
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 1.4e-32 145.2 132 52.3
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 1.4e-32 145.2 115 60.9
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 2.4e-32 144.4 118 59.3
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 4.0e-32 143.7 132 50.8
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 5.3e-32 143.3 132 50.8
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 5.3e-32 143.3 132 47.7
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 6.9e-32 142.9 84 75.0
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 6.9e-32 142.9 130 46.9
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 6.9e-32 142.9 133 51.1
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 9.0e-32 142.5 130 50.0
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 9.0e-32 142.5 133 51.1
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 9.0e-32 142.5 132 51.5
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.2e-31 142.1 136 51.5
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 1.0e-30 139.0 133 48.9
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 1.3e-30 138.7 132 50.0
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 2.2e-30 137.9 132 48.5
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 2.2e-30 137.9 133 50.4
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 2.2e-30 137.9 88 64.8
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.2e-30 137.9 133 49.6
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 2.9e-30 137.5 88 65.9
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 4.9e-30 136.7 135 49.6
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 8.4e-30 136.0 132 49.2
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 8.4e-30 136.0 132 47.0
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 1.4e-29 135.2 132 50.0
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 1.4e-29 135.2 132 50.0
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 1.4e-29 135.2 136 47.1
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 5.5e-29 133.3 133 49.6
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 7.1e-29 132.9 132 47.0
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 1.2e-28 132.1 115 53.0
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 1.6e-28 131.7 115 54.8
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 3.5e-28 130.6 133 48.1
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.5e-28 130.6 129 48.1
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 3.5e-28 130.6 132 50.0
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 7.9e-28 129.4 134 47.0
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 1.0e-27 129.0 115 53.9
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 1.3e-27 128.6 132 47.0
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.1e-26 125.6 132 47.7
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 1.5e-26 125.2 132 44.7
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 1.5e-26 125.2 131 45.8
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.9e-26 124.8 117 50.4
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 2.5e-26 124.4 130 44.6
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 5.7e-26 123.2 129 46.5
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 7.4e-26 122.9 125 47.2
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 9.7e-26 122.5 83 61.4
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 1.3e-25 122.1 88 58.0
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.3e-25 122.1 135 45.9
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 1.3e-25 122.1 137 44.5
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 2.2e-25 121.3 120 62.5
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 3.7e-25 120.6 136 44.9
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 6.3e-25 119.8 132 47.7
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 6.3e-25 119.8 87 57.5
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 6.3e-25 119.8 87 57.5
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 1.4e-24 118.6 126 44.4
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 2.4e-24 117.9 138 44.2
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 3.1e-24 117.5 105 67.6
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 3.1e-24 117.5 124 49.2
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 6.9e-24 116.3 136 43.4
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 9.0e-24 115.9 128 54.7
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 3.4e-23 114.0 139 44.6
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 5.9e-23 113.2 135 42.2
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 1.0e-22 112.5 128 53.1
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 1.0e-19 102.4 135 40.0
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 2.5e-18 97.8 137 39.4
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 4.3e-18 97.1 136 43.4
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 1.7e-17 95.1 131 38.2
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 2.8e-17 94.4 88 45.5
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 8.2e-17 92.8 118 39.8
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 3.1e-16 90.9 138 34.8
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 3.4e-15 87.4 49 71.4
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 3.2e-13 80.9 86 40.7
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 4.2e-13 80.5 136 39.0
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 3.9e-11 73.9 132 33.3
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.3e-09 68.9 128 27.3
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 2.2e-09 68.2 84 36.9
Nitab4.5_0005124g0010 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.2e-09 68.2 48 58.3
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 8.2e-09 66.2 125 26.4
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 1.8e-08 65.1 81 33.3
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 1.8e-08 65.1 81 32.1
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 5.3e-08 63.5 81 33.3
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 7.0e-08 63.2 78 33.3
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 9.1e-08 62.8 131 26.0
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.2e-07 62.4 78 32.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-07 62.0 84 32.1
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 2.0e-07 61.6 78 32.1
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 2.0e-07 61.6 78 32.1
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 2.0e-07 61.6 78 32.1
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 2.0e-07 61.6 125 24.8
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 2.0e-07 61.6 80 33.8
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 2.0e-07 61.6 80 35.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 2.6e-07 61.2 84 31.0
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 4.5e-07 60.5 83 34.9
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 4.5e-07 60.5 86 33.7
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 5.9e-07 60.1 123 25.2
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 5.9e-07 60.1 84 27.4
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.7e-07 59.7 83 32.5
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 7.7e-07 59.7 81 29.6
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 7.7e-07 59.7 128 27.3
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 7.7e-07 59.7 128 27.3
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 1.0e-06 59.3 128 23.4
Sabra16G0170400 Salix brachista HOM05D007455 ORTHO05D009431 1.0e-06 59.3 84 27.4
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.0e-06 59.3 86 31.4
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.3e-06 58.9 85 28.2
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 1.3e-06 58.9 131 29.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.3e-06 58.9 84 32.1
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.3e-06 58.9 84 32.1
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.3e-06 58.9 84 32.1
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 1.7e-06 58.5 128 22.7
TWI79G0736 Tripterygium wilfordii HOM05D007455 ORTHO05D009431 1.7e-06 58.5 123 25.2
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 2.2e-06 58.2 83 33.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.2e-06 58.2 79 30.4
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 2.2e-06 58.2 88 31.8
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 2.2e-06 58.2 131 29.0
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 2.9e-06 57.8 68 33.8
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 2.9e-06 57.8 83 34.9
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 2.9e-06 57.8 84 26.2
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 2.9e-06 57.8 132 25.0
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 3.8e-06 57.4 124 24.2
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 5.0e-06 57.0 75 32.0
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 5.0e-06 57.0 75 32.0
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.5e-06 56.6 72 30.6
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 6.5e-06 56.6 84 32.1
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 6.5e-06 56.6 80 32.5
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 6.5e-06 56.6 75 29.3
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 6.5e-06 56.6 131 28.2
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 8.5e-06 56.2 80 28.8
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 8.5e-06 56.2 125 20.8
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 8.5e-06 56.2 87 32.2


User provided reference genes

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