Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 7.2e-201 703.7 367 100.0
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 3.8e-101 372.5 340 60.6
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 3.8e-101 372.5 336 60.4
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 4.6e-99 365.5 327 59.9
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 1.5e-97 360.5 333 59.5
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 1.5e-97 360.5 300 65.3
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 1.5e-97 360.5 331 59.8
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.7e-93 347.1 323 57.9
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 1.9e-92 343.6 324 58.0
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 2.5e-92 343.2 324 58.6
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 6.7e-90 335.1 321 56.4
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 4.4e-89 332.4 321 56.1
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.4e-89 332.4 298 61.1
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 7.4e-89 331.6 369 52.0
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 1.7e-88 330.5 320 56.2
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 3.7e-88 329.3 320 55.3
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.4e-87 327.4 346 55.2
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 1.8e-87 327.0 291 61.9
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 7.0e-87 325.1 320 54.7
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 1.2e-86 324.3 304 58.6
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 7.7e-86 321.6 315 58.1
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 1.0e-85 321.2 325 52.6
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 3.2e-84 316.2 324 56.8
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 1.6e-83 313.9 292 58.2
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 3.6e-83 312.8 280 62.5
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 1.8e-82 310.5 327 51.7
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 6.7e-82 308.5 292 61.3
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 1.2e-81 307.8 376 50.3
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 2.6e-81 306.6 302 55.6
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.4e-81 305.8 346 51.4
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.7e-81 305.4 331 54.1
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.3e-80 304.3 287 57.1
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.2e-80 303.5 299 56.5
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 8.2e-80 301.6 302 54.3
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 8.2e-80 301.6 336 50.9
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.4e-79 300.8 330 55.8
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 1.8e-79 300.4 297 54.9
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 9.1e-79 298.1 329 51.1
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 1.2e-78 297.7 283 56.5
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 1.6e-78 297.4 281 58.7
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 5.0e-77 292.4 281 58.0
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 5.0e-77 292.4 278 56.1
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.6e-75 287.3 303 57.1
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 3.6e-75 286.2 302 54.0
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.0e-74 284.6 320 49.1
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 4.0e-74 282.7 292 56.5
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 8.8e-74 281.6 287 54.4
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 1.2e-73 281.2 286 53.8
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 7.0e-71 271.9 289 56.1
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 3.5e-70 269.6 275 54.2
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 4.5e-70 269.2 216 66.7
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 5.0e-69 265.8 259 54.8
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 8.6e-69 265.0 297 51.5
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 1.1e-68 264.6 259 54.8
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 1.5e-68 264.2 289 51.6
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 1.9e-68 263.8 280 52.1
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 7.2e-68 261.9 297 51.2
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 3.6e-67 259.6 297 50.8
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 3.6e-67 259.6 281 51.6
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 6.1e-67 258.8 284 51.4
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 6.8e-66 255.4 270 53.7
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 8.9e-66 255.0 298 50.7
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 1.2e-65 254.6 286 52.1
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 1.2e-65 254.6 285 52.3
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 4.4e-65 252.7 285 53.3
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 5.7e-65 252.3 285 51.9
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 8.3e-64 248.4 317 47.9
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 2.4e-63 246.9 261 54.4
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 7.0e-63 245.4 185 67.6
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 1.6e-62 244.2 322 47.2
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 2.3e-58 230.3 241 56.0
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 4.0e-58 229.6 199 61.8
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 6.4e-56 222.2 269 49.1
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.1e-55 221.5 239 54.8
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 2.0e-54 217.2 230 56.1
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 3.9e-53 213.0 329 41.0
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 8.9e-50 201.8 319 42.0
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 4.4e-49 199.5 133 73.7
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 7.5e-49 198.7 132 76.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 6.4e-48 195.7 160 61.2
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 1.7e-37 161.0 138 60.9
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 3.3e-36 156.8 177 50.8
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 3.1e-34 150.2 209 42.6
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 4.4e-25 119.8 190 40.5
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 4.9e-24 116.3 177 43.5
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 9.3e-23 112.1 270 33.0
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 6.6e-21 105.9 290 30.3
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 2.8e-19 100.5 134 46.3
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 3.6e-19 100.1 176 39.8
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 4.5e-17 93.2 64 68.8
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 1.7e-16 91.3 63 68.3
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 6.4e-16 89.4 68 63.2
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 1.1e-15 88.6 140 45.0
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 3.2e-15 87.0 100 50.0
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 5.4e-15 86.3 238 31.5
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 4.6e-14 83.2 50 82.0
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 6.7e-13 79.3 217 32.3
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 8.7e-13 79.0 73 54.8
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 1.1e-12 78.6 169 36.7
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 1.6e-11 74.7 96 42.7
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.5e-09 68.2 48 66.7
CSS0023659 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 2.9e-08 63.9 42 73.8
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.9e-08 63.9 217 28.1
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 5.5e-07 59.7 81 43.2
Nitab4.5_0004239g0020 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.6e-06 58.2 62 48.4
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 1.6e-06 58.2 78 46.2
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-06 56.6 61 39.3


User provided reference genes

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