Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 3.1e-290 1001.1 519 100.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.4e-234 815.5 527 81.4
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 3.6e-230 801.6 538 78.8
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 8.0e-230 800.4 501 82.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.8e-229 799.3 537 78.8
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.8e-229 799.3 525 78.5
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 5.2e-229 797.7 501 81.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 8.3e-227 790.4 532 77.4
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 2.4e-226 788.9 499 81.4
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 5.4e-226 787.7 526 78.1
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 7.7e-225 783.9 526 77.6
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.3e-224 783.1 522 79.3
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 3.3e-223 778.5 498 80.3
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 2.1e-222 775.8 495 80.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 2.1e-222 775.8 515 77.1
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-222 775.4 526 77.0
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 3.6e-222 775.0 530 77.0
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 6.1e-222 774.2 532 76.3
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 2.3e-221 772.3 532 75.9
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 6.8e-221 770.8 541 74.9
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 8.9e-221 770.4 551 73.5
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 8.9e-221 770.4 532 75.9
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.5e-220 769.6 471 82.6
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 3.4e-220 768.5 469 81.9
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 7.5e-220 767.3 532 75.6
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 9.8e-220 766.9 532 75.8
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 1.3e-219 766.5 502 78.5
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 1.7e-219 766.1 528 75.0
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.7e-219 766.1 527 75.3
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 3.7e-219 765.0 498 79.3
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 3.7e-219 765.0 502 78.3
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.1e-218 763.5 532 75.8
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.1e-218 763.5 535 73.8
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.4e-218 763.1 531 74.6
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 7.0e-218 760.8 508 76.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 7.0e-218 760.8 533 73.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-217 760.0 533 75.4
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.2e-217 760.0 527 75.5
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 5.9e-217 757.7 500 78.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 7.8e-217 757.3 529 74.7
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 3.9e-216 755.0 528 73.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 5.0e-216 754.6 499 77.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 5.0e-216 754.6 539 74.4
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 8.6e-216 753.8 525 74.9
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.1e-215 753.4 505 77.0
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.9e-215 752.7 508 75.8
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 3.3e-215 751.9 531 72.7
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 4.3e-215 751.5 530 74.2
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.6e-215 751.1 502 76.9
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 5.6e-215 751.1 622 66.9
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 3.6e-214 748.4 511 75.3
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.5e-212 743.0 526 73.4
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.0e-212 742.7 541 72.8
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 2.6e-212 742.3 535 73.5
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 4.4e-212 741.5 520 74.4
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 4.4e-212 741.5 522 74.1
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.8e-212 741.1 527 73.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 6.4e-211 737.6 534 72.3
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 8.3e-211 737.3 487 77.8
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.2e-210 735.3 538 71.2
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 1.6e-209 733.0 537 72.6
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.6e-209 733.0 498 74.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.6e-209 733.0 524 72.1
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 4.6e-209 731.5 505 74.7
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.3e-208 729.9 538 71.0
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 3.0e-208 728.8 524 72.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.5e-207 723.8 516 72.9
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.6e-206 721.8 630 64.0
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 8.1e-206 720.7 540 70.4
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-205 720.3 520 72.1
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.4e-205 719.9 520 71.7
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 8.9e-205 717.2 535 70.1
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.5e-204 716.5 535 70.7
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 3.4e-204 715.3 500 74.0
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 3.7e-203 711.8 498 75.1
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 8.3e-203 710.7 538 69.7
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.1e-202 710.3 532 70.1
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.6e-201 706.4 538 69.7
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.5e-199 699.1 562 67.1
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.6e-198 696.4 537 69.1
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 2.1e-198 696.0 536 69.2
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 6.2e-198 694.5 546 68.1
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 5.2e-197 691.4 503 71.2
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 6.8e-197 691.0 553 67.1
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 3.7e-195 685.3 495 73.1
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 9.6e-191 670.6 607 62.3
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 4.9e-187 658.3 472 73.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.3e-183 645.6 426 79.3
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.4e-181 640.2 440 74.3
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 7.6e-180 634.4 588 59.7
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 5.4e-178 628.2 511 63.6
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 9.0e-173 610.9 525 61.0
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.2e-172 610.5 512 61.7
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 8.1e-166 587.8 531 58.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 8.1e-166 587.8 531 58.9
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 5.3e-165 585.1 461 68.8
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.3e-159 565.8 477 62.1
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 6.7e-152 541.6 363 77.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 4.3e-151 538.9 354 77.7
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 7.4e-151 538.1 479 58.0
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 8.2e-150 534.6 364 75.8
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 5.0e-147 525.4 367 74.9
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 8.5e-147 524.6 516 52.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.8e-136 490.3 358 70.9
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.5e-130 470.7 321 76.6
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 9.4e-122 441.4 398 64.8
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 7.5e-103 378.6 520 42.7
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.0e-99 368.2 249 75.1
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.9e-99 366.3 249 74.7
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.9e-93 347.4 485 42.1
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.1e-84 317.4 240 69.6
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.6e-81 306.6 490 38.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.9e-78 297.0 343 51.9
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 2.6e-63 247.3 146 82.9
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-52 211.5 490 34.5
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.0e-51 208.8 113 93.8
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 3.2e-45 187.2 502 31.7
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.3e-43 181.8 484 33.7
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.4e-40 171.0 505 31.1
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 9.0e-40 169.1 115 74.8
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-36 158.3 285 40.4
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.8e-33 146.7 433 33.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 6.9e-32 142.9 486 31.3
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 9.4e-29 132.5 461 31.7
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.1e-28 131.3 86 72.1
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 3.7e-25 120.6 265 33.6
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-23 115.2 326 33.1
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 2.6e-23 114.4 307 32.6
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 5.9e-23 113.2 211 35.5
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-22 111.3 283 35.0
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.9e-22 110.9 283 34.6
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.5e-21 107.8 59 84.7
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 7.9e-20 102.8 321 30.8
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 7.9e-20 102.8 288 31.6
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.9e-19 100.5 228 37.3
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.1e-18 99.0 74 62.2
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-17 95.1 204 36.3
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 4.5e-15 87.0 140 39.3
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-15 86.7 157 36.9
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 2.9e-14 84.3 200 37.0
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-13 82.4 141 39.7
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 4.2e-13 80.5 392 28.1
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 9.4e-13 79.3 392 27.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.6e-12 78.6 353 29.2
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-10 71.6 119 42.0
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 2.8e-09 67.8 316 27.8
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 4.1e-08 63.9 232 30.2
Pp3c24_2440 Physcomitrium patens HOM05D004787 ORTHO05D313483 3.8e-06 57.4 75 42.7
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 5.0e-06 57.0 45 64.4
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 6.5e-06 56.6 45 64.4


User provided reference genes

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