Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 6.1e-224 780.4 367 100.0
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.0e-199 698.4 403 83.6
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.5e-198 696.0 414 82.4
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 4.8e-197 691.0 403 82.6
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.1e-196 689.9 403 83.4
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.8e-196 689.1 401 82.8
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 5.3e-196 687.6 402 81.3
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 1.3e-194 682.9 402 81.3
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.3e-194 682.9 403 81.9
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.3e-194 682.9 408 79.7
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 2.9e-194 681.8 403 81.1
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.9e-193 679.1 405 81.7
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 3.2e-193 678.3 365 88.5
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 4.2e-193 677.9 417 78.7
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.6e-192 676.0 403 80.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 2.1e-192 675.6 403 80.9
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 2.1e-192 675.6 402 80.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 2.7e-192 675.2 404 80.0
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 3.6e-192 674.9 403 81.6
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 8.0e-192 673.7 404 81.9
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.4e-191 672.9 390 82.8
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 2.3e-191 672.2 401 80.3
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 4.0e-191 671.4 404 79.2
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 4.0e-191 671.4 404 79.5
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 5.2e-191 671.0 404 79.5
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.2e-190 669.8 404 79.5
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.2e-190 669.8 390 83.8
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 4.4e-190 667.9 403 81.4
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 5.7e-190 667.5 403 80.4
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 7.5e-190 667.2 403 79.4
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 7.5e-190 667.2 403 78.9
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 9.8e-190 666.8 403 80.1
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 9.8e-190 666.8 403 80.1
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 1.3e-189 666.4 401 81.0
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.3e-189 666.4 404 79.2
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.7e-189 666.0 401 81.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.7e-189 666.0 405 79.3
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.7e-189 666.0 402 79.6
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 2.8e-189 665.2 402 79.1
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 2.8e-189 665.2 404 80.4
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 2.8e-189 665.2 404 80.4
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 6.3e-189 664.1 397 79.8
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 6.3e-189 664.1 403 79.7
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 3.1e-188 661.8 404 78.7
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 3.1e-188 661.8 402 78.6
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 5.4e-188 661.0 392 80.4
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 7.0e-188 660.6 403 80.4
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 2.7e-187 658.7 409 78.2
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 3.5e-187 658.3 404 79.2
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 5.9e-187 657.5 413 78.0
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.0e-186 656.8 401 78.3
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.0e-186 656.8 401 80.0
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 1.7e-186 656.0 402 78.6
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.2e-186 655.6 402 79.1
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 2.2e-186 655.6 403 78.9
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 3.8e-186 654.8 403 78.9
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.5e-185 652.1 409 77.8
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 3.2e-185 651.7 403 78.2
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 4.2e-185 651.4 401 78.1
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 4.2e-185 651.4 396 80.3
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.2e-184 649.8 401 77.3
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.6e-184 649.4 402 79.1
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 2.7e-184 648.7 433 73.7
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 4.7e-184 647.9 389 79.4
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.0e-183 646.7 402 78.6
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.0e-183 644.8 401 78.1
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.2e-182 643.3 403 75.4
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.2e-182 643.3 402 77.4
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 3.4e-182 641.7 403 75.4
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.4e-182 641.3 401 77.6
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 9.8e-182 640.2 404 76.0
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 9.8e-182 640.2 404 75.2
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 9.8e-182 640.2 415 75.2
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 1.7e-181 639.4 399 77.2
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 6.3e-181 637.5 403 74.9
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 2.4e-180 635.6 390 79.5
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 3.5e-179 631.7 390 77.7
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.6e-178 627.5 403 76.4
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.5e-177 625.5 402 77.1
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.3e-177 625.2 432 72.0
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 7.3e-177 624.0 404 78.2
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 1.2e-176 623.2 402 74.9
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.2e-176 623.2 403 74.2
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 2.1e-176 622.5 400 76.0
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 2.8e-176 622.1 399 75.9
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.6e-174 615.5 398 75.6
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 4.4e-174 614.8 405 74.8
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 3.2e-172 608.6 387 74.9
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 3.2e-172 608.6 387 74.9
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 2.7e-171 605.5 403 71.5
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 1.0e-170 603.6 402 72.4
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 3.9e-170 601.7 389 74.6
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 7.3e-169 597.4 388 75.3
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.0e-167 591.7 357 78.2
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.8e-166 587.8 367 77.7
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 7.5e-166 587.4 386 73.8
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 1.7e-165 586.3 410 70.5
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 3.7e-165 585.1 395 74.9
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.4e-165 584.3 381 75.3
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 4.6e-163 578.2 388 71.1
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-162 577.0 388 70.9
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 1.1e-161 573.5 388 70.4
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 2.3e-159 565.8 399 70.4
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 6.8e-159 564.3 376 71.3
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 4.4e-158 561.6 341 77.7
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 4.3e-153 545.0 403 69.2
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 4.4e-150 535.0 357 71.4
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 2.9e-149 532.3 358 73.5
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 2.7e-147 525.8 339 74.3
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 5.2e-143 511.5 304 80.9
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 9.9e-142 507.3 396 62.4
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 3.8e-141 505.4 305 80.0
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 6.4e-141 504.6 400 63.0
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.0e-138 497.3 396 61.9
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.9e-137 493.0 401 61.1
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.1e-135 485.7 305 77.4
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 2.8e-128 462.6 345 66.1
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 6.0e-123 444.9 400 57.5
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.4e-119 433.7 394 56.3
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 4.6e-99 365.5 259 66.4
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 4.8e-96 355.5 333 60.1
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 2.0e-94 350.1 241 70.5
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.0e-90 337.8 218 78.4
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.0e-90 336.3 170 89.4
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.9e-84 317.0 160 91.2
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 2.8e-80 303.1 224 65.2
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.6e-78 297.4 207 71.0
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.6e-75 287.3 146 88.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.0e-66 256.1 438 37.0
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 3.7e-64 249.6 186 66.1
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.7e-46 190.3 190 54.7
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.3e-37 160.6 107 73.8
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.2e-32 144.1 172 47.1
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.9e-32 142.9 72 91.7
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.0e-22 109.4 187 41.7
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 7.1e-15 85.9 282 29.8
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 6.4e-08 62.8 51 60.8


User provided reference genes

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