Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1419.4 697 100.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1255.7 694 86.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1248.4 694 86.5
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1242.3 694 86.5
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1240.7 694 85.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 694 86.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1237.6 694 85.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1235.3 694 86.3
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1234.9 695 85.3
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1233.4 694 85.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1231.1 696 85.2
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1226.1 694 84.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1222.6 691 84.9
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1219.5 694 84.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 698 84.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 694 82.9
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1212.6 696 83.9
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1212.6 695 83.3
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1208.7 698 82.8
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 696 83.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 694 83.7
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 694 82.1
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 719 80.8
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1204.5 694 82.7
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 694 83.6
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1202.2 698 82.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 693 83.0
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 693 83.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 694 83.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1195.6 694 83.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1195.3 699 82.7
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1195.3 696 83.0
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 694 83.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 696 82.9
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 699 82.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 693 83.1
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 696 82.8
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 694 83.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 696 82.2
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 694 82.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 699 81.7
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 673 84.5
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 696 82.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 694 81.8
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 694 82.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 695 82.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 692 81.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 696 81.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 692 81.8
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 694 81.7
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 695 82.3
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 698 81.8
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 695 81.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 696 81.8
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 694 82.1
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 694 81.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 695 81.3
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 698 80.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 693 81.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1172.9 694 81.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1169.5 695 81.2
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 695 81.0
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1163.3 695 81.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 695 79.7
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 695 80.6
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 646 84.8
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 694 80.5
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 694 80.8
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 694 79.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1156.0 694 80.8
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 694 79.0
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 694 79.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 695 78.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 694 79.0
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 693 79.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 747 76.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 694 77.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 78.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 694 80.5
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 696 78.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 693 79.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 696 78.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 693 80.5
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 719 77.3
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 723 76.8
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 687 77.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1127.1 611 87.9
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 740 75.1
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1122.5 694 78.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 697 79.8
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 694 77.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1109.4 713 74.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1103.6 681 79.1
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 681 78.7
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 694 76.4
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1088.6 695 77.4
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 675 75.9
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.4e-311 1071.6 694 76.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 5.0e-304 1047.3 700 72.9
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.2e-298 1026.5 581 84.0
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 7.8e-297 1023.5 701 70.3
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.6e-294 1014.6 689 71.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 7.6e-284 980.3 638 75.7
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-269 932.9 707 68.2
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.5e-265 918.3 539 82.9
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.8e-262 907.9 581 74.9
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.2e-250 868.2 699 60.8
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-245 853.6 539 78.3
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.3e-230 801.2 703 57.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.3e-230 801.2 703 57.2
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.4e-229 799.3 470 81.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.5e-228 795.4 704 57.4
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.9e-227 792.3 701 55.9
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.8e-222 775.8 702 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 7.2e-218 761.1 711 55.4
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.6e-193 680.2 386 83.7
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.7e-158 563.9 722 43.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.4e-151 539.7 377 71.4
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 8.4e-142 508.4 506 54.7
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 4.2e-109 399.8 762 34.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 9.4e-109 398.7 248 80.2
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.4e-104 384.0 822 33.2
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.1e-104 383.3 323 62.5
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.5e-101 372.9 269 66.9
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.6e-79 301.6 183 77.0
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.9e-78 297.0 251 61.8
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.5e-77 295.0 247 61.9
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 8.0e-76 289.3 194 72.2
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 3.2e-72 277.3 188 70.7
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.9e-64 251.5 235 55.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.3e-62 245.4 629 31.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.1e-52 209.5 125 76.0
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 4.6e-47 193.7 138 73.9
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-42 178.3 145 66.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 7.4e-37 159.8 95 78.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.6e-34 151.4 232 40.5
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.4e-32 145.6 76 88.2
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 3.5e-31 141.0 75 88.0
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.5e-26 124.0 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.0e-22 112.8 86 60.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.0e-14 86.3 86 53.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 6.7e-14 83.6 51 76.5
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 5.7e-13 80.5 51 70.6
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 2.3e-06 58.5 33 78.8


User provided reference genes

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