Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 4.5e-45 184.1 86 100.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 8.2e-31 136.7 73 86.3
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.2e-29 132.9 73 82.2
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.5e-29 131.0 70 87.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.7e-29 130.2 73 82.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 7.7e-29 130.2 73 80.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 2.2e-28 128.6 73 82.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.9e-28 128.3 77 77.9
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 6.5e-28 127.1 73 79.5
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 6.5e-28 127.1 72 81.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 8.5e-28 126.7 73 80.8
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.9e-27 125.6 73 76.7
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.5e-27 125.2 77 77.9
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.2e-27 124.8 72 79.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.2e-27 124.8 73 76.7
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 3.2e-27 124.8 73 80.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.2e-27 124.8 73 78.1
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 7.2e-27 123.6 73 80.8
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.2e-27 123.6 72 80.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.2e-27 123.6 69 79.7
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 9.4e-27 123.2 73 76.7
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 9.4e-27 123.2 73 76.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-26 122.9 73 78.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.2e-26 122.9 79 75.9
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.6e-26 122.5 73 75.3
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.6e-26 122.5 73 75.3
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.6e-26 122.5 69 79.7
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.1e-26 122.1 73 75.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.7e-26 121.7 72 79.2
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.6e-26 121.3 73 75.3
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.6e-26 121.3 73 75.3
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.7e-26 120.9 76 69.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 4.7e-26 120.9 73 76.7
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 4.7e-26 120.9 71 76.1
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 8.0e-26 120.2 73 78.1
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.4e-25 119.4 72 77.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.0e-25 117.9 73 74.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.2e-25 117.5 73 71.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 6.7e-25 117.1 77 66.2
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.5e-24 115.9 70 72.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 2.0e-24 115.5 71 69.0
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.4e-24 114.4 70 74.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 4.4e-24 114.4 72 70.8
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.3e-23 112.8 71 73.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.2e-23 112.1 71 71.8
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-23 111.7 66 78.8
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.7e-23 111.3 70 72.9
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.8e-23 110.9 69 73.9
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 6.3e-23 110.5 72 66.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-22 109.8 73 74.0
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.4e-22 109.4 72 66.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.4e-22 108.6 73 71.2
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.4e-22 108.6 68 75.0
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.1e-22 107.8 65 73.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 5.3e-22 107.5 70 67.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 3.5e-21 104.8 73 63.0
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 5.9e-21 104.0 69 71.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 7.7e-21 103.6 70 65.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.2e-20 102.1 73 67.1
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.2e-20 102.1 71 64.8
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.9e-20 101.7 73 67.1
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.9e-20 101.7 72 68.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.8e-20 101.3 73 67.1
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.0e-20 100.9 72 65.3
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-19 99.8 72 63.9
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.9e-19 99.0 73 64.4
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-19 99.0 72 66.7
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-19 99.0 55 81.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.9e-19 99.0 73 63.0
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.2e-19 98.2 73 64.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.2e-19 97.8 72 62.5
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 4.2e-19 97.8 72 63.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.2e-19 97.8 72 65.3
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-19 97.8 77 61.0
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 7.2e-19 97.1 70 62.9
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 7.2e-19 97.1 73 58.9
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 7.2e-19 97.1 73 58.9
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.2e-19 97.1 73 58.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 7.2e-19 97.1 73 63.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.4e-19 96.7 72 63.9
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 9.4e-19 96.7 72 65.3
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 9.4e-19 96.7 73 63.0
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-18 96.3 72 63.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.2e-18 96.3 72 61.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.2e-18 96.3 72 61.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.6e-18 95.9 72 63.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.1e-18 95.5 72 63.9
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.1e-18 95.5 67 62.7
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.1e-18 95.5 72 61.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.1e-18 95.5 72 62.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.7e-18 95.1 72 61.1
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.7e-18 95.1 72 59.7
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.6e-18 94.7 72 63.9
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.6e-18 94.7 73 57.5
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.6e-18 94.7 73 57.5
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.6e-18 94.7 72 61.1
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 3.6e-18 94.7 67 64.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.6e-18 94.7 72 62.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.7e-18 94.4 72 59.7
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.7e-18 94.4 59 76.3
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.1e-18 94.0 68 63.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 8.0e-18 93.6 72 59.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.0e-18 93.6 72 62.5
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 8.0e-18 93.6 72 59.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 8.0e-18 93.6 72 58.3
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-17 93.2 72 62.5
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.4e-17 92.8 70 60.0
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.4e-17 92.8 72 58.3
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.4e-17 92.8 72 61.1
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.8e-17 92.4 72 56.9
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.8e-17 92.4 72 58.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.3e-17 92.0 72 55.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.0e-17 91.7 72 56.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 3.0e-17 91.7 73 57.5
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.0e-17 91.3 70 61.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 4.0e-17 91.3 73 58.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.2e-17 90.9 72 61.1
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.2e-17 90.9 71 63.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.2e-17 90.9 66 62.1
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 8.8e-17 90.1 73 58.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 8.8e-17 90.1 68 61.8
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.8e-17 90.1 72 59.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.8e-17 90.1 72 59.7
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-16 89.7 72 61.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.5e-16 89.4 72 56.9
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.5e-16 89.4 72 56.9
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.5e-16 89.4 72 56.9
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.5e-16 89.4 72 56.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-16 89.4 72 56.9
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.5e-16 89.4 67 64.2
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.0e-16 89.0 68 60.3
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.6e-16 88.6 72 58.3
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.4e-16 88.2 72 59.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 4.4e-16 87.8 73 56.2
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.3e-15 86.3 64 57.8
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.7e-15 85.9 72 55.6
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.7e-15 84.7 56 69.6
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.4e-14 82.8 72 52.8
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.8e-14 82.4 67 59.7
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.8e-14 82.4 46 80.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.0e-13 79.0 72 50.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.5e-13 78.2 72 51.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 5.5e-11 70.9 44 68.2
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.1e-10 68.9 72 52.8
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.0e-09 65.1 55 47.3


User provided reference genes

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