Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 1.7e-171 605.9 299 100.0
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.4e-138 496.5 309 78.6
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.0e-137 491.1 306 77.8
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 4.3e-135 485.0 303 76.6
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 4.9e-131 471.5 306 74.8
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.1e-130 470.3 306 74.5
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 7.1e-130 467.6 306 73.2
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 9.2e-130 467.2 306 74.5
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-129 466.5 306 72.5
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.7e-129 465.7 311 72.0
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 3.5e-129 465.3 296 77.0
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.3e-128 463.4 309 74.1
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 3.9e-128 461.8 340 68.5
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 1.9e-127 459.5 307 71.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.3e-127 458.4 306 73.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 7.3e-127 457.6 309 71.2
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.8e-126 455.7 309 70.9
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 2.8e-126 455.7 309 70.9
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 6.2e-126 454.5 335 67.8
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.4e-125 453.4 302 71.2
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 3.1e-125 452.2 309 71.5
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 5.2e-125 451.4 313 71.2
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 2.6e-124 449.1 309 69.9
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.4e-124 448.7 310 70.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 5.8e-124 448.0 323 70.0
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 3.8e-123 445.3 310 69.4
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.4e-122 442.6 306 69.0
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 3.2e-122 442.2 315 67.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.2e-121 440.3 303 68.3
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.1e-121 439.5 307 69.1
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 6.0e-121 438.0 308 68.2
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.3e-120 436.8 309 68.6
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.3e-120 436.0 303 67.3
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 3.9e-120 435.3 309 68.0
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 5.1e-120 434.9 309 68.3
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 8.7e-120 434.1 310 69.0
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 8.7e-120 434.1 309 67.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.5e-119 433.3 306 67.6
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 3.3e-119 432.2 302 69.9
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.3e-118 430.3 303 67.0
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.6e-118 429.9 280 71.4
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 3.6e-118 428.7 307 67.8
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 3.6e-118 428.7 309 66.7
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.4e-117 426.0 306 65.4
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 2.4e-117 426.0 309 67.3
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 3.1e-117 425.6 309 67.0
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 4.0e-117 425.2 309 66.7
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 5.3e-117 424.9 309 66.7
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 5.3e-117 424.9 310 66.5
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 6.9e-117 424.5 302 67.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 9.0e-117 424.1 306 66.0
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.5e-116 423.3 309 65.7
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 3.4e-116 422.2 306 66.0
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 7.6e-116 421.0 304 67.1
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 9.9e-116 420.6 307 65.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.3e-115 420.2 309 66.7
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.7e-115 419.9 305 64.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 3.8e-115 418.7 309 64.1
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 8.4e-115 417.5 306 67.3
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 9.3e-114 414.1 315 64.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.2e-113 413.7 281 70.8
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 2.7e-113 412.5 295 65.4
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 3.5e-113 412.1 308 63.6
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 4.6e-113 411.8 295 64.7
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 4.6e-113 411.8 303 64.4
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 4.6e-113 411.8 306 65.7
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 6.7e-112 407.9 306 63.4
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.1e-111 407.1 369 57.2
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.5e-111 406.8 295 63.7
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 4.3e-111 405.2 305 62.6
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 4.3e-111 405.2 319 61.1
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 4.3e-111 405.2 308 62.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 5.6e-111 404.8 305 63.0
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 7.4e-111 404.4 305 63.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 6.2e-110 401.4 305 62.3
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 8.1e-110 401.0 280 68.6
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.4e-109 400.2 306 63.4
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 2.4e-109 399.4 307 62.5
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 5.3e-109 398.3 295 64.4
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 3.4e-108 395.6 340 57.1
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 4.5e-108 395.2 309 65.4
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 7.6e-108 394.4 305 61.0
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 9.9e-108 394.0 305 61.6
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.1e-106 390.6 283 68.9
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.4e-106 390.2 308 61.4
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 3.5e-105 385.6 305 61.0
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 4.6e-105 385.2 273 66.3
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 4.6e-105 385.2 314 61.8
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.1e-103 380.6 285 67.4
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 9.0e-101 370.9 335 54.6
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 7.1e-98 361.3 306 61.1
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 1.5e-95 353.6 309 58.3
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 7.4e-95 351.3 282 63.5
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.2e-94 347.8 282 62.8
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.0e-92 343.2 303 55.4
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 7.2e-90 334.7 314 52.2
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 9.4e-90 334.3 272 61.4
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 1.6e-89 333.6 289 57.8
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 8.8e-88 327.8 303 55.4
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 3.4e-84 315.8 298 53.4
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.7e-81 305.4 314 53.5
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 6.1e-81 305.1 283 55.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.7e-79 297.7 306 50.0
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 4.5e-76 288.9 224 63.4
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 5.9e-76 288.5 182 74.2
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.0e-75 287.7 224 62.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.6e-73 280.4 188 71.3
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 1.4e-72 277.3 222 61.7
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 5.2e-72 275.4 308 46.4
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.4e-64 250.8 200 63.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.3e-62 244.2 192 65.6
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.2e-62 243.4 166 72.3
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 7.0e-61 238.4 188 58.5
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.9e-58 230.3 217 53.5
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 6.1e-57 225.3 164 67.7
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 6.3e-54 215.3 232 51.3
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.2e-52 211.1 299 41.5
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 8.6e-51 204.9 337 36.2
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.2e-50 202.6 152 60.5
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 8.0e-49 198.4 208 50.5
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.9e-43 179.9 131 67.2
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.6e-39 166.8 126 64.3
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.4e-38 162.2 112 65.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 5.0e-35 152.5 287 33.1
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.3e-34 149.4 262 36.6
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 4.4e-31 139.4 300 33.3
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.3e-27 127.9 83 71.1
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 9.5e-26 121.7 100 54.0
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 5.2e-24 115.9 77 64.9
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 3.6e-17 93.2 82 58.5
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.4e-15 86.7 52 75.0
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 4.2e-13 79.7 63 58.7
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 7.8e-12 75.5 77 51.9
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 3.9e-11 73.2 74 48.6
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.3e-09 68.2 46 60.9
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 3.6e-09 66.6 90 41.1
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 9.9e-07 58.5 36 75.0


User provided reference genes

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